RNA–Protein interactions for RNA: ENST00000557275.5

SYNE3-205, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SYNE3, Length 13,488 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-205ENST00000557275 KRTAP26-1Q6PEX3 210 aa5.26□□□□□ -1.57
SYNE3-205ENST00000557275 TNP1P09430 55 aa5.25□□□□□ -1.57
SYNE3-205ENST00000557275 CDH23Q9H251 3354 aa5.25□□□□□ -1.57
SYNE3-205ENST00000557275 SPEGQ15772 3267 aa5.24□□□□□ -1.57
SYNE3-205ENST00000557275 TENM4Q6N022 2769 aa5.23□□□□□ -1.57
SYNE3-205ENST00000557275 ADGRG4Q8IZF6 3080 aa5.23□□□□□ -1.57
SYNE3-205ENST00000557275 Q5VSD8 79 aa5.22□□□□□ -1.57
SYNE3-205ENST00000557275 TACC2O95359 2948 aa5.21□□□□□ -1.57
SYNE3-205ENST00000557275 CFAP47Q6ZTR5 3102 aa5.21□□□□□ -1.58
SYNE3-205ENST00000557275 A8MUU9 505 aa5.2□□□□□ -1.58
SYNE3-205ENST00000557275 KRTAP29-1A8MX34 341 aaPredicted RBP5.2□□□□□ -1.58
SYNE3-205ENST00000557275 DCHS2Q6V1P9 2916 aa5.17□□□□□ -1.58
SYNE3-205ENST00000557275 ATMQ13315 3056 aa5.17□□□□□ -1.58
SYNE3-205ENST00000557275 EYSQ5T1H1 3165 aa5.16□□□□□ -1.58
SYNE3-205ENST00000557275 PKD1L1Q8TDX9 2849 aa5.16□□□□□ -1.58
SYNE3-205ENST00000557275 LCE6AA0A183 80 aa5.16□□□□□ -1.58
SYNE3-205ENST00000557275 KRTAP10-3P60369 221 aa5.15□□□□□ -1.58
SYNE3-205ENST00000557275 C10orf95Q9H7T3 257 aa5.15□□□□□ -1.59
SYNE3-205ENST00000557275 TGP01266 2768 aa5.14□□□□□ -1.59
SYNE3-205ENST00000557275 DMXL1Q9Y485 3027 aa5.14□□□□□ -1.59
SYNE3-205ENST00000557275 NOTCH2NLQ7Z3S9 236 aa5.11□□□□□ -1.59
SYNE3-205ENST00000557275 KRTAP4-16G5E9R7 235 aaPredicted RBP5.1□□□□□ -1.59
SYNE3-205ENST00000557275 KRTAP11-1Q8IUC1 163 aa5.1□□□□□ -1.59
SYNE3-205ENST00000557275 VWFP04275 2813 aa5.1□□□□□ -1.59
SYNE3-205ENST00000557275 SRRM2Q9UQ35 2752 aaKnown RBP5.09□□□□□ -1.6
SYNE3-205ENST00000557275 KRTAP1-3Q8IUG1 177 aa5.08□□□□□ -1.6
SYNE3-205ENST00000557275 CELSR1Q9NYQ6 3014 aa5.06□□□□□ -1.6
SYNE3-205ENST00000557275 SZT2Q5T011 3432 aa5.05□□□□□ -1.6
SYNE3-205ENST00000557275 KRTAP1-1Q07627 177 aa5.04□□□□□ -1.6
SYNE3-205ENST00000557275 ZANQ9Y493 2812 aa5.01□□□□□ -1.61
SYNE3-205ENST00000557275 P0C880 135 aa4.99□□□□□ -1.61
SYNE3-205ENST00000557275 A8MU10 97 aa4.99□□□□□ -1.61
SYNE3-205ENST00000557275 PRO2289Q9P1D8 64 aa4.98□□□□□ -1.61
SYNE3-205ENST00000557275 KRTAP21-3Q3LHN1 58 aa4.98□□□□□ -1.61
SYNE3-205ENST00000557275 TENM2Q9NT68 2774 aa4.97□□□□□ -1.61
SYNE3-205ENST00000557275 MXRA5Q9NR99 2828 aa4.96□□□□□ -1.62
SYNE3-205ENST00000557275 Q6ZRN7 208 aaPredicted RBP4.95□□□□□ -1.62
SYNE3-205ENST00000557275 COL7A1Q02388 2944 aa4.93□□□□□ -1.62
SYNE3-205ENST00000557275 KRTAP10-1P60331 282 aa4.93□□□□□ -1.62
SYNE3-205ENST00000557275 KRTAP1-5Q9BYS1 174 aa4.93□□□□□ -1.62
SYNE3-205ENST00000557275 MYO15AQ9UKN7 3530 aa4.92□□□□□ -1.62
SYNE3-205ENST00000557275 SPTBN5Q9NRC6 3674 aaKnown RBP4.91□□□□□ -1.62
SYNE3-205ENST00000557275 NBPF19A0A087WUL8 3843 aa4.91□□□□□ -1.62
SYNE3-205ENST00000557275 LOC400499M0QZD8 3231 aa4.88□□□□□ -1.63
SYNE3-205ENST00000557275 FBN2P35556 2912 aa4.88□□□□□ -1.63
SYNE3-205ENST00000557275 KRTAP10-2P60368 255 aa4.87□□□□□ -1.63
SYNE3-205ENST00000557275 WDFY3Q8IZQ1 3526 aa4.86□□□□□ -1.63
SYNE3-205ENST00000557275 ZFHX3Q15911 3703 aa4.85□□□□□ -1.63
SYNE3-205ENST00000557275 KRTAP10-8P60410 259 aa4.83□□□□□ -1.64
SYNE3-205ENST00000557275 ASPMQ8IZT6 3477 aa4.83□□□□□ -1.64
SYNE3-205ENST00000557275 HRNRQ86YZ3 2850 aaPredicted RBP4.82□□□□□ -1.64
SYNE3-205ENST00000557275 KRTAP13-1Q8IUC0 172 aa4.8□□□□□ -1.64
SYNE3-205ENST00000557275 ZFHX4Q86UP3 3567 aa4.77□□□□□ -1.65
SYNE3-205ENST00000557275 H0YAA0 97 aa4.77□□□□□ -1.65
SYNE3-205ENST00000557275 LAMA5O15230 3695 aa4.77□□□□□ -1.65
SYNE3-205ENST00000557275 KRTAP13-2Q52LG2 175 aa4.73□□□□□ -1.65
SYNE3-205ENST00000557275 TPRXLQ17RH7 258 aa4.72□□□□□ -1.65
SYNE3-205ENST00000557275 DCHS1Q96JQ0 3298 aa4.7□□□□□ -1.66
SYNE3-205ENST00000557275 INE1O15225 51 aa4.67□□□□□ -1.66
SYNE3-205ENST00000557275 MEGF8Q7Z7M0 2845 aa4.66□□□□□ -1.66
SYNE3-205ENST00000557275 RELNP78509 3460 aa4.64□□□□□ -1.67
SYNE3-205ENST00000557275 FBN1P35555 2871 aaKnown RBP4.63□□□□□ -1.67
SYNE3-205ENST00000557275 XP32Q5T750 250 aa4.62□□□□□ -1.67
SYNE3-205ENST00000557275 FBN3Q75N90 2809 aa4.59□□□□□ -1.67
SYNE3-205ENST00000557275 KRTAP13-4Q3LI77 160 aa4.59□□□□□ -1.67
SYNE3-205ENST00000557275 KRTAP10-10P60014 251 aa4.56□□□□□ -1.68
SYNE3-205ENST00000557275 KRTAP7-1Q8IUC3 87 aa4.55□□□□□ -1.68
SYNE3-205ENST00000557275 SPENQ96T58 3664 aaKnown RBP4.51□□□□□ -1.69
SYNE3-205ENST00000557275 KRTAP12-2P59991 146 aa4.49□□□□□ -1.69
SYNE3-205ENST00000557275 CUBNO60494 3623 aa4.48□□□□□ -1.69
SYNE3-205ENST00000557275 SMG1Q96Q15 3661 aaKnown RBP4.46□□□□□ -1.7
SYNE3-205ENST00000557275 KRTAP1-4P0C5Y4 121 aa4.45□□□□□ -1.7
SYNE3-205ENST00000557275 DMDP11532 3685 aa4.44□□□□□ -1.7
SYNE3-205ENST00000557275 OTOGQ6ZRI0 2925 aa4.43□□□□□ -1.7
SYNE3-205ENST00000557275 KRTAP13-3Q3SY46 172 aa4.42□□□□□ -1.7
SYNE3-205ENST00000557275 CSMD1Q96PZ7 3565 aa4.41□□□□□ -1.7
SYNE3-205ENST00000557275 KRTAP15-1Q3LI76 137 aa4.37□□□□□ -1.71
SYNE3-205ENST00000557275 A0A1B0GVY2 172 aa4.37□□□□□ -1.71
SYNE3-205ENST00000557275 MUC3AQ02505 3323 aa4.35□□□□□ -1.71
SYNE3-205ENST00000557275 KRTAP12-1P59990 96 aa4.34□□□□□ -1.71
SYNE3-205ENST00000557275 TRRAPQ9Y4A5 3859 aa4.33□□□□□ -1.72
SYNE3-205ENST00000557275 SVEP1Q4LDE5 3571 aa4.27□□□□□ -1.73
SYNE3-205ENST00000557275 KRTAP23-1A1A580 65 aa4.24□□□□□ -1.73
SYNE3-205ENST00000557275 VPS13CQ709C8 3753 aa4.23□□□□□ -1.73
SYNE3-205ENST00000557275 AKAP9Q99996 3911 aa4.21□□□□□ -1.74
SYNE3-205ENST00000557275 CSMD2Q7Z408 3487 aa4.18□□□□□ -1.74
SYNE3-205ENST00000557275 DNAH1Q9P2D7 4330 aa4.13□□□□□ -1.75
SYNE3-205ENST00000557275 KRTAP10-12P60413 245 aa4.12□□□□□ -1.75
SYNE3-205ENST00000557275 CSMD3Q7Z407 3707 aa4.11□□□□□ -1.75
SYNE3-205ENST00000557275 BSNQ9UPA5 3926 aa4.11□□□□□ -1.75
SYNE3-205ENST00000557275 ALMS1Q8TCU4 4167 aa4.03□□□□□ -1.76
SYNE3-205ENST00000557275 KRTAP10-6P60371 365 aaPredicted RBP4.02□□□□□ -1.77
SYNE3-205ENST00000557275 KRTAP12-3P60328 96 aa3.98□□□□□ -1.77
SYNE3-205ENST00000557275 DNAH2Q9P225 4427 aa3.96□□□□□ -1.78
SYNE3-205ENST00000557275 KRTAP3-1Q9BYR8 98 aa3.95□□□□□ -1.78
SYNE3-205ENST00000557275 CMYA5Q8N3K9 4069 aa3.95□□□□□ -1.78
SYNE3-205ENST00000557275 ANK3Q12955 4377 aaKnown RBP3.93□□□□□ -1.78
SYNE3-205ENST00000557275 ZNF469Q96JG9 3925 aaPredicted RBP3.93□□□□□ -1.78
SYNE3-205ENST00000557275 HUWE1Q7Z6Z7 4374 aaKnown RBP3.86□□□□□ -1.79
SYNE3-205ENST00000557275 CRCT1Q9UGL9 99 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 130 ms