RNA–Protein interactions for RNA: ENST00000557275.5

SYNE3-205, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SYNE3, Length 13,488 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-205ENST00000557275 PELP1Q8IZL8 1130 aaKnown RBP14.92□□□□□ -0.02
SYNE3-205ENST00000557275 MYT1Q01538 1121 aa14.35□□□□□ -0.11
SYNE3-205ENST00000557275 CCER1Q8TC90 406 aaPredicted RBP14.15□□□□□ -0.14
SYNE3-205ENST00000557275 ERICH6Q7L0X2 663 aa13.94□□□□□ -0.18
SYNE3-205ENST00000557275 DCAF8L2P0C7V8 631 aa13.91□□□□□ -0.18
SYNE3-205ENST00000557275 YTHDC1Q96MU7 727 aaKnown RBP13.85□□□□□ -0.19
SYNE3-205ENST00000557275 CENPBP07199 599 aaPredicted RBP13.69□□□□□ -0.22
SYNE3-205ENST00000557275 FAM9AQ8IZU1 332 aaPredicted RBP13.6□□□□□ -0.23
SYNE3-205ENST00000557275 APLP2Q06481 763 aa13.57□□□□□ -0.24
SYNE3-205ENST00000557275 TTBK1Q5TCY1 1321 aaPredicted RBP13.46□□□□□ -0.26
SYNE3-205ENST00000557275 NEFLP07196 543 aa13.44□□□□□ -0.26
SYNE3-205ENST00000557275 ZEB1P37275 1124 aaPredicted RBP13.43□□□□□ -0.26
SYNE3-205ENST00000557275 DAXXQ9UER7 740 aaPredicted RBP13.33□□□□□ -0.28
SYNE3-205ENST00000557275 SUPT5HO00267 1087 aaKnown RBP13.18□□□□□ -0.3
SYNE3-205ENST00000557275 RTL5Q5HYW3 569 aaPredicted RBP13□□□□□ -0.33
SYNE3-205ENST00000557275 ZNF316A6NFI3 1004 aaPredicted RBP12.9□□□□□ -0.34
SYNE3-205ENST00000557275 PCGF6Q9BYE7 350 aa12.85□□□□□ -0.35
SYNE3-205ENST00000557275 NISCHQ9Y2I1 1504 aa12.8□□□□□ -0.36
SYNE3-205ENST00000557275 GLIPR1L2Q4G1C9 344 aa12.78□□□□□ -0.36
SYNE3-205ENST00000557275 CLSPNQ9HAW4 1339 aa12.73□□□□□ -0.37
SYNE3-205ENST00000557275 EHMT2Q96KQ7 1210 aa12.68□□□□□ -0.38
SYNE3-205ENST00000557275 SHROOM4Q9ULL8 1493 aa12.58□□□□□ -0.4
SYNE3-205ENST00000557275 MYT1LQ9UL68 1186 aa12.56□□□□□ -0.4
SYNE3-205ENST00000557275 ANP32BQ92688 251 aaKnown RBP12.55□□□□□ -0.4
SYNE3-205ENST00000557275 ZBTB47Q9UFB7 747 aaPredicted RBP12.51□□□□□ -0.41
SYNE3-205ENST00000557275 ATP1B4Q9UN42 357 aaPredicted RBP12.46□□□□□ -0.41
SYNE3-205ENST00000557275 TRIM41Q8WV44 630 aa12.44□□□□□ -0.42
SYNE3-205ENST00000557275 UBTFP17480 764 aaKnown RBP12.43□□□□□ -0.42
SYNE3-205ENST00000557275 NEFMP07197 916 aa12.42□□□□□ -0.42
SYNE3-205ENST00000557275 TRIM26Q12899 539 aaPredicted RBP12.4□□□□□ -0.42
SYNE3-205ENST00000557275 CDK11AQ9UQ88 783 aaPredicted RBP12.36□□□□□ -0.43
SYNE3-205ENST00000557275 ANP32AP39687 249 aaKnown RBP12.33□□□□□ -0.44
SYNE3-205ENST00000557275 HRCP23327 699 aa12.29□□□□□ -0.44
SYNE3-205ENST00000557275 TNNT2P45379 298 aaPredicted RBP12.25□□□□□ -0.45
SYNE3-205ENST00000557275 POLR3GLQ9BT43 218 aa12.23□□□□□ -0.45
SYNE3-205ENST00000557275 EIF5BO60841 1220 aaKnown RBP12.23□□□□□ -0.45
SYNE3-205ENST00000557275 RANGAP1P46060 587 aaPredicted RBP12.23□□□□□ -0.45
SYNE3-205ENST00000557275 UPF2Q9HAU5 1272 aaKnown RBP12.2□□□□□ -0.46
SYNE3-205ENST00000557275 CDK11BP21127 795 aaKnown RBP12.17□□□□□ -0.46
SYNE3-205ENST00000557275 SLC4A1APQ9BWU0 796 aaKnown RBP12.17□□□□□ -0.46
SYNE3-205ENST00000557275 HSP90AA1P07900 732 aaKnown RBP12.16□□□□□ -0.46
SYNE3-205ENST00000557275 DIEXFQ68CQ4 756 aaKnown RBP12.16□□□□□ -0.46
SYNE3-205ENST00000557275 CANXP27824 592 aaKnown RBP12.14□□□□□ -0.47
SYNE3-205ENST00000557275 ANP32EQ9BTT0 268 aa12.12□□□□□ -0.47
SYNE3-205ENST00000557275 TRIM44Q96DX7 344 aaPredicted RBP12.11□□□□□ -0.47
SYNE3-205ENST00000557275 ANP32CO43423 234 aa12.09□□□□□ -0.47
SYNE3-205ENST00000557275 NCLP19338 710 aaKnown RBP12.02□□□□□ -0.49
SYNE3-205ENST00000557275 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.01□□□□□ -0.49
SYNE3-205ENST00000557275 HNRNPUL2Q1KMD3 747 aaKnown RBP12.01□□□□□ -0.49
SYNE3-205ENST00000557275 ITGAEP38570 1179 aa11.92□□□□□ -0.5
SYNE3-205ENST00000557275 GTF3C3Q9Y5Q9 886 aa11.92□□□□□ -0.5
SYNE3-205ENST00000557275 GOLGA6L22H0YM25 854 aa11.88□□□□□ -0.51
SYNE3-205ENST00000557275 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.88□□□□□ -0.51
SYNE3-205ENST00000557275 ERICH6BQ5W0A0 696 aa11.85□□□□□ -0.51
SYNE3-205ENST00000557275 CNGB1Q14028 1251 aaPredicted RBP11.84□□□□□ -0.51
SYNE3-205ENST00000557275 SLC24A1O60721 1099 aa11.84□□□□□ -0.51
SYNE3-205ENST00000557275 BECN1Q14457 450 aa11.84□□□□□ -0.51
SYNE3-205ENST00000557275 ZRSR1Q15695 479 aaKnown RBP11.83□□□□□ -0.52
SYNE3-205ENST00000557275 GOLGA6L6A8MZA4 724 aa11.82□□□□□ -0.52
SYNE3-205ENST00000557275 NRDCO43847 1150 aa11.82□□□□□ -0.52
SYNE3-205ENST00000557275 DDRGK1Q96HY6 314 aa11.81□□□□□ -0.52
SYNE3-205ENST00000557275 L1TD1Q5T7N2 865 aaKnown RBP11.8□□□□□ -0.52
SYNE3-205ENST00000557275 BCANQ96GW7 911 aa11.79□□□□□ -0.52
SYNE3-205ENST00000557275 CHIC1Q5VXU3 224 aa11.79□□□□□ -0.52
SYNE3-205ENST00000557275 MYH16Q9H6N6 1097 aa11.78□□□□□ -0.52
SYNE3-205ENST00000557275 NPM2Q86SE8 214 aaKnown RBP11.76□□□□□ -0.53
SYNE3-205ENST00000557275 TRIM52Q96A61 297 aa11.75□□□□□ -0.53
SYNE3-205ENST00000557275 CHAF1AQ13111 956 aaPredicted RBP11.75□□□□□ -0.53
SYNE3-205ENST00000557275 ACIN1Q9UKV3 1341 aaKnown RBP11.73□□□□□ -0.53
SYNE3-205ENST00000557275 FAM50AQ14320 339 aaKnown RBP11.72□□□□□ -0.53
SYNE3-205ENST00000557275 DNTTIP2Q5QJE6 756 aaKnown RBP11.7□□□□□ -0.54
SYNE3-205ENST00000557275 PPARGC1BQ86YN6 1023 aaKnown RBP11.7□□□□□ -0.54
SYNE3-205ENST00000557275 USP35Q9P2H5 1018 aa11.7□□□□□ -0.54
SYNE3-205ENST00000557275 PTMAP06454 111 aaKnown RBP11.69□□□□□ -0.54
SYNE3-205ENST00000557275 CASC1Q6TDU7 716 aa11.67□□□□□ -0.54
SYNE3-205ENST00000557275 CCDC136Q96JN2 1154 aa11.66□□□□□ -0.54
SYNE3-205ENST00000557275 BCL11AQ9H165 835 aa11.65□□□□□ -0.54
SYNE3-205ENST00000557275 NBR1Q14596 966 aa11.62□□□□□ -0.55
SYNE3-205ENST00000557275 ZNF326Q5BKZ1 582 aaKnown RBP11.62□□□□□ -0.55
SYNE3-205ENST00000557275 NEUROD1Q13562 356 aa11.61□□□□□ -0.55
SYNE3-205ENST00000557275 PPM1GO15355 546 aaPredicted RBP11.61□□□□□ -0.55
SYNE3-205ENST00000557275 ARID4BQ4LE39 1312 aaPredicted RBP11.58□□□□□ -0.56
SYNE3-205ENST00000557275 NAP1L5Q96NT1 182 aaPredicted RBP11.56□□□□□ -0.56
SYNE3-205ENST00000557275 CHMP4BQ9H444 224 aaKnown RBP11.56□□□□□ -0.56
SYNE3-205ENST00000557275 FKBP8Q14318 412 aa11.56□□□□□ -0.56
SYNE3-205ENST00000557275 CALRP27797 417 aaKnown RBP11.55□□□□□ -0.56
SYNE3-205ENST00000557275 TONSLQ96HA7 1378 aa11.54□□□□□ -0.56
SYNE3-205ENST00000557275 PTMSP20962 102 aa11.54□□□□□ -0.56
SYNE3-205ENST00000557275 CFAP44Q96MT7 982 aa11.54□□□□□ -0.56
SYNE3-205ENST00000557275 ESF1Q9H501 851 aaKnown RBP11.53□□□□□ -0.56
SYNE3-205ENST00000557275 MSNP26038 577 aaKnown RBP11.52□□□□□ -0.56
SYNE3-205ENST00000557275 ARXQ96QS3 562 aa11.52□□□□□ -0.56
SYNE3-205ENST00000557275 TNNT3P45378 269 aaPredicted RBP11.52□□□□□ -0.57
SYNE3-205ENST00000557275 KIAA2012Q0VF49 1180 aa11.52□□□□□ -0.57
SYNE3-205ENST00000557275 WDR43Q15061 677 aaKnown RBP eCLIP11.51□□□□□ -0.57
SYNE3-205ENST00000557275 HNRNPUQ00839 825 aaKnown RBP eCLIP11.51□□□□□ -0.57
SYNE3-205ENST00000557275 TMC1Q8TDI8 760 aa11.49□□□□□ -0.57
SYNE3-205ENST00000557275 SETQ01105 290 aaPredicted RBP11.48□□□□□ -0.57
SYNE3-205ENST00000557275 GOLGA6L1Q8N7Z2 621 aa11.47□□□□□ -0.57
SYNE3-205ENST00000557275 NOC3LQ8WTT2 800 aaKnown RBP11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 108.7 ms