RNA–Protein interactions for RNA: ENST00000537824.2

CSMD1-215, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 13,512 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-215ENST00000537824 Q6ZSA8 131 aa3.35□□□□□ -1.87
CSMD1-215ENST00000537824 BOD1L1Q8NFC6 3051 aa3.35□□□□□ -1.87
CSMD1-215ENST00000537824 A8MUU9 505 aa3.34□□□□□ -1.87
CSMD1-215ENST00000537824 A0A087X002 238 aa3.33□□□□□ -1.88
CSMD1-215ENST00000537824 NOTCH2NLQ7Z3S9 236 aa3.33□□□□□ -1.88
CSMD1-215ENST00000537824 KRTAP4-16G5E9R7 235 aaPredicted RBP3.31□□□□□ -1.88
CSMD1-215ENST00000537824 C20orf166-AS1Q96NR2 134 aa3.3□□□□□ -1.88
CSMD1-215ENST00000537824 KRTAP11-1Q8IUC1 163 aa3.3□□□□□ -1.88
CSMD1-215ENST00000537824 WWC2-AS2Q96NR7 200 aa3.3□□□□□ -1.88
CSMD1-215ENST00000537824 PLAC8Q9NZF1 115 aa3.3□□□□□ -1.88
CSMD1-215ENST00000537824 FBN3Q75N90 2809 aa3.29□□□□□ -1.88
CSMD1-215ENST00000537824 RANBP2P49792 3224 aaKnown RBP3.28□□□□□ -1.88
CSMD1-215ENST00000537824 UTRNP46939 3433 aa3.28□□□□□ -1.88
CSMD1-215ENST00000537824 OTOGQ6ZRI0 2925 aa3.27□□□□□ -1.89
CSMD1-215ENST00000537824 C10orf95Q9H7T3 257 aa3.27□□□□□ -1.89
CSMD1-215ENST00000537824 XIRP2A4UGR9 3374 aa3.27□□□□□ -1.89
CSMD1-215ENST00000537824 MEGF8Q7Z7M0 2845 aa3.27□□□□□ -1.89
CSMD1-215ENST00000537824 M0R2T5 61 aa3.26□□□□□ -1.89
CSMD1-215ENST00000537824 KRTAP1-5Q9BYS1 174 aa3.26□□□□□ -1.89
CSMD1-215ENST00000537824 REV3LO60673 3130 aa3.25□□□□□ -1.89
CSMD1-215ENST00000537824 KRTAP1-3Q8IUG1 177 aa3.24□□□□□ -1.89
CSMD1-215ENST00000537824 KRTAP1-1Q07627 177 aa3.22□□□□□ -1.89
CSMD1-215ENST00000537824 MKI67P46013 3256 aaKnown RBP3.22□□□□□ -1.89
CSMD1-215ENST00000537824 ZFHX3Q15911 3703 aa3.2□□□□□ -1.9
CSMD1-215ENST00000537824 P0C880 135 aa3.19□□□□□ -1.9
CSMD1-215ENST00000537824 KRTAP10-1P60331 282 aa3.18□□□□□ -1.9
CSMD1-215ENST00000537824 H0YAA0 97 aa3.18□□□□□ -1.9
CSMD1-215ENST00000537824 COL6A3P12111 3177 aa3.18□□□□□ -1.9
CSMD1-215ENST00000537824 SPTBN5Q9NRC6 3674 aaKnown RBP3.15□□□□□ -1.91
CSMD1-215ENST00000537824 KRTAP7-1Q8IUC3 87 aa3.13□□□□□ -1.91
CSMD1-215ENST00000537824 KRTAP10-2P60368 255 aa3.13□□□□□ -1.91
CSMD1-215ENST00000537824 CFAP47Q6ZTR5 3102 aa3.11□□□□□ -1.91
CSMD1-215ENST00000537824 PP632Q6XCG6 107 aa3.11□□□□□ -1.91
CSMD1-215ENST00000537824 FBN1P35555 2871 aaKnown RBP3.11□□□□□ -1.91
CSMD1-215ENST00000537824 KRTAP13-2Q52LG2 175 aa3.1□□□□□ -1.91
CSMD1-215ENST00000537824 TNP1P09430 55 aa3.09□□□□□ -1.91
CSMD1-215ENST00000537824 LAMA3Q16787 3333 aa3.09□□□□□ -1.91
CSMD1-215ENST00000537824 KRTAP10-8P60410 259 aa3.08□□□□□ -1.92
CSMD1-215ENST00000537824 KRTAP13-1Q8IUC0 172 aa3.08□□□□□ -1.92
CSMD1-215ENST00000537824 CELSR3Q9NYQ7 3312 aa3.07□□□□□ -1.92
CSMD1-215ENST00000537824 NBPF19A0A087WUL8 3843 aa3.07□□□□□ -1.92
CSMD1-215ENST00000537824 Q5VSD8 79 aa3.06□□□□□ -1.92
CSMD1-215ENST00000537824 BRCA2P51587 3418 aa3.05□□□□□ -1.92
CSMD1-215ENST00000537824 DNAH14Q0VDD8 3507 aa3.04□□□□□ -1.92
CSMD1-215ENST00000537824 UNC80Q8N2C7 3258 aa3.04□□□□□ -1.92
CSMD1-215ENST00000537824 RPS29P62273 56 aaKnown RBP3.02□□□□□ -1.93
CSMD1-215ENST00000537824 Q6ZRN7 208 aaPredicted RBP3.01□□□□□ -1.93
CSMD1-215ENST00000537824 USP34Q70CQ2 3546 aa3.01□□□□□ -1.93
CSMD1-215ENST00000537824 VCANP13611 3396 aa3□□□□□ -1.93
CSMD1-215ENST00000537824 SPEGQ15772 3267 aa3□□□□□ -1.93
CSMD1-215ENST00000537824 MYO15AQ9UKN7 3530 aa2.99□□□□□ -1.93
CSMD1-215ENST00000537824 TPRXLQ17RH7 258 aa2.98□□□□□ -1.93
CSMD1-215ENST00000537824 EYSQ5T1H1 3165 aa2.96□□□□□ -1.94
CSMD1-215ENST00000537824 ZFHX4Q86UP3 3567 aa2.93□□□□□ -1.94
CSMD1-215ENST00000537824 SMG1Q96Q15 3661 aaKnown RBP2.92□□□□□ -1.94
CSMD1-215ENST00000537824 KRTAP12-2P59991 146 aa2.92□□□□□ -1.94
CSMD1-215ENST00000537824 LOC400499M0QZD8 3231 aa2.91□□□□□ -1.94
CSMD1-215ENST00000537824 DMDP11532 3685 aa2.91□□□□□ -1.94
CSMD1-215ENST00000537824 KRTAP13-3Q3SY46 172 aa2.9□□□□□ -1.95
CSMD1-215ENST00000537824 WDFY3Q8IZQ1 3526 aa2.89□□□□□ -1.95
CSMD1-215ENST00000537824 CDH23Q9H251 3354 aa2.86□□□□□ -1.95
CSMD1-215ENST00000537824 A0A1B0GVY2 172 aa2.86□□□□□ -1.95
CSMD1-215ENST00000537824 XP32Q5T750 250 aa2.85□□□□□ -1.95
CSMD1-215ENST00000537824 SPENQ96T58 3664 aaKnown RBP2.85□□□□□ -1.95
CSMD1-215ENST00000537824 SZT2Q5T011 3432 aa2.85□□□□□ -1.95
CSMD1-215ENST00000537824 KRTAP15-1Q3LI76 137 aa2.85□□□□□ -1.95
CSMD1-215ENST00000537824 KRTAP13-4Q3LI77 160 aa2.84□□□□□ -1.95
CSMD1-215ENST00000537824 KRTAP12-1P59990 96 aa2.84□□□□□ -1.95
CSMD1-215ENST00000537824 LAMA5O15230 3695 aa2.83□□□□□ -1.96
CSMD1-215ENST00000537824 ALMS1Q8TCU4 4167 aa2.83□□□□□ -1.96
CSMD1-215ENST00000537824 KRTAP1-4P0C5Y4 121 aa2.83□□□□□ -1.96
CSMD1-215ENST00000537824 KRTAP21-3Q3LHN1 58 aa2.83□□□□□ -1.96
CSMD1-215ENST00000537824 AKAP9Q99996 3911 aa2.81□□□□□ -1.96
CSMD1-215ENST00000537824 VPS13CQ709C8 3753 aa2.8□□□□□ -1.96
CSMD1-215ENST00000537824 INE1O15225 51 aa2.79□□□□□ -1.96
CSMD1-215ENST00000537824 MUC3AQ02505 3323 aa2.79□□□□□ -1.96
CSMD1-215ENST00000537824 KRTAP10-10P60014 251 aa2.76□□□□□ -1.97
CSMD1-215ENST00000537824 TRRAPQ9Y4A5 3859 aa2.76□□□□□ -1.97
CSMD1-215ENST00000537824 PRO2289Q9P1D8 64 aa2.75□□□□□ -1.97
CSMD1-215ENST00000537824 ASPMQ8IZT6 3477 aa2.72□□□□□ -1.97
CSMD1-215ENST00000537824 KRTAP3-1Q9BYR8 98 aa2.72□□□□□ -1.97
CSMD1-215ENST00000537824 RELNP78509 3460 aa2.71□□□□□ -1.98
CSMD1-215ENST00000537824 KRTAP10-6P60371 365 aaPredicted RBP2.71□□□□□ -1.98
CSMD1-215ENST00000537824 BSNQ9UPA5 3926 aa2.7□□□□□ -1.98
CSMD1-215ENST00000537824 DCHS1Q96JQ0 3298 aa2.69□□□□□ -1.98
CSMD1-215ENST00000537824 LYSTQ99698 3801 aa2.65□□□□□ -1.98
CSMD1-215ENST00000537824 CSMD1Q96PZ7 3565 aa2.65□□□□□ -1.99
CSMD1-215ENST00000537824 DNAH3Q8TD57 4116 aa2.63□□□□□ -1.99
CSMD1-215ENST00000537824 ZNF469Q96JG9 3925 aaPredicted RBP2.62□□□□□ -1.99
CSMD1-215ENST00000537824 KRTAP3-2Q9BYR7 98 aa2.62□□□□□ -1.99
CSMD1-215ENST00000537824 CSMD3Q7Z407 3707 aa2.62□□□□□ -1.99
CSMD1-215ENST00000537824 HECTD4Q9Y4D8 3996 aa2.57□□□□□ -2
CSMD1-215ENST00000537824 KRTAP3-3Q9BYR6 98 aa2.55□□□□□ -2
CSMD1-215ENST00000537824 CMYA5Q8N3K9 4069 aa2.54□□□□□ -2
CSMD1-215ENST00000537824 DNAH7Q8WXX0 4024 aa2.51□□□□□ -2.01
CSMD1-215ENST00000537824 KRTAP10-12P60413 245 aa2.5□□□□□ -2.01
CSMD1-215ENST00000537824 CUBNO60494 3623 aa2.49□□□□□ -2.01
CSMD1-215ENST00000537824 KRTAP12-3P60328 96 aa2.48□□□□□ -2.01
CSMD1-215ENST00000537824 CRCT1Q9UGL9 99 aa2.47□□□□□ -2.01
CSMD1-215ENST00000537824 KRTAP23-1A1A580 65 aa2.46□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms