RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 VWFP04275 2813 aa4.09□□□□□ -1.76
VPS53-204ENST00000437048 PKD1L1Q8TDX9 2849 aa4.08□□□□□ -1.76
VPS53-204ENST00000437048 LAMA1P25391 3075 aa4.08□□□□□ -1.76
VPS53-204ENST00000437048 SRRM2Q9UQ35 2752 aaKnown RBP4.08□□□□□ -1.76
VPS53-204ENST00000437048 SZT2Q5T011 3432 aa4.07□□□□□ -1.76
VPS53-204ENST00000437048 Q6ZRN7 208 aaPredicted RBP4.06□□□□□ -1.76
VPS53-204ENST00000437048 XIRP2A4UGR9 3374 aa4.06□□□□□ -1.76
VPS53-204ENST00000437048 P0C880 135 aa4.05□□□□□ -1.76
VPS53-204ENST00000437048 WDFY4Q6ZS81 3184 aa4.05□□□□□ -1.76
VPS53-204ENST00000437048 ZANQ9Y493 2812 aa4.04□□□□□ -1.76
VPS53-204ENST00000437048 LAMA3Q16787 3333 aa4.04□□□□□ -1.76
VPS53-204ENST00000437048 UNC80Q8N2C7 3258 aa4.03□□□□□ -1.76
VPS53-204ENST00000437048 HTTP42858 3142 aa4.03□□□□□ -1.76
VPS53-204ENST00000437048 REV3LO60673 3130 aa4.03□□□□□ -1.76
VPS53-204ENST00000437048 TGP01266 2768 aa4.02□□□□□ -1.77
VPS53-204ENST00000437048 TENM4Q6N022 2769 aa4.02□□□□□ -1.77
VPS53-204ENST00000437048 DNAH14Q0VDD8 3507 aa4□□□□□ -1.77
VPS53-204ENST00000437048 MKI67P46013 3256 aaKnown RBP4□□□□□ -1.77
VPS53-204ENST00000437048 KRTAP1-5Q9BYS1 174 aa4□□□□□ -1.77
VPS53-204ENST00000437048 ATMQ13315 3056 aa3.98□□□□□ -1.77
VPS53-204ENST00000437048 CDH23Q9H251 3354 aa3.98□□□□□ -1.77
VPS53-204ENST00000437048 CELSR1Q9NYQ6 3014 aa3.98□□□□□ -1.77
VPS53-204ENST00000437048 CELSR3Q9NYQ7 3312 aa3.97□□□□□ -1.77
VPS53-204ENST00000437048 FBN2P35556 2912 aa3.97□□□□□ -1.77
VPS53-204ENST00000437048 ADGRG4Q8IZF6 3080 aa3.97□□□□□ -1.77
VPS53-204ENST00000437048 DMXL1Q9Y485 3027 aa3.96□□□□□ -1.78
VPS53-204ENST00000437048 Q5VSD8 79 aa3.95□□□□□ -1.78
VPS53-204ENST00000437048 BOD1L1Q8NFC6 3051 aa3.95□□□□□ -1.78
VPS53-204ENST00000437048 C10orf95Q9H7T3 257 aa3.91□□□□□ -1.78
VPS53-204ENST00000437048 KRTAP10-1P60331 282 aa3.91□□□□□ -1.78
VPS53-204ENST00000437048 PRO2289Q9P1D8 64 aa3.91□□□□□ -1.78
VPS53-204ENST00000437048 MXRA5Q9NR99 2828 aa3.9□□□□□ -1.78
VPS53-204ENST00000437048 H0YAA0 97 aa3.9□□□□□ -1.79
VPS53-204ENST00000437048 COL7A1Q02388 2944 aa3.89□□□□□ -1.79
VPS53-204ENST00000437048 SPEGQ15772 3267 aa3.89□□□□□ -1.79
VPS53-204ENST00000437048 RANBP2P49792 3224 aaKnown RBP3.89□□□□□ -1.79
VPS53-204ENST00000437048 INE1O15225 51 aa3.88□□□□□ -1.79
VPS53-204ENST00000437048 KRTAP13-2Q52LG2 175 aa3.88□□□□□ -1.79
VPS53-204ENST00000437048 TENM2Q9NT68 2774 aa3.87□□□□□ -1.79
VPS53-204ENST00000437048 VCANP13611 3396 aa3.87□□□□□ -1.79
VPS53-204ENST00000437048 KRTAP7-1Q8IUC3 87 aa3.84□□□□□ -1.8
VPS53-204ENST00000437048 KRTAP21-3Q3LHN1 58 aa3.83□□□□□ -1.8
VPS53-204ENST00000437048 COL6A3P12111 3177 aa3.83□□□□□ -1.8
VPS53-204ENST00000437048 TPRXLQ17RH7 258 aa3.83□□□□□ -1.8
VPS53-204ENST00000437048 KRTAP10-2P60368 255 aa3.82□□□□□ -1.8
VPS53-204ENST00000437048 USP34Q70CQ2 3546 aa3.81□□□□□ -1.8
VPS53-204ENST00000437048 KRTAP13-3Q3SY46 172 aa3.78□□□□□ -1.8
VPS53-204ENST00000437048 MYO15AQ9UKN7 3530 aa3.77□□□□□ -1.81
VPS53-204ENST00000437048 KRTAP13-4Q3LI77 160 aa3.76□□□□□ -1.81
VPS53-204ENST00000437048 CFAP47Q6ZTR5 3102 aa3.76□□□□□ -1.81
VPS53-204ENST00000437048 MEGF8Q7Z7M0 2845 aa3.73□□□□□ -1.81
VPS53-204ENST00000437048 XP32Q5T750 250 aa3.72□□□□□ -1.81
VPS53-204ENST00000437048 KRTAP23-1A1A580 65 aa3.71□□□□□ -1.81
VPS53-204ENST00000437048 KRTAP1-4P0C5Y4 121 aa3.7□□□□□ -1.82
VPS53-204ENST00000437048 HRNRQ86YZ3 2850 aaPredicted RBP3.7□□□□□ -1.82
VPS53-204ENST00000437048 ZFHX3Q15911 3703 aa3.68□□□□□ -1.82
VPS53-204ENST00000437048 FBN1P35555 2871 aaKnown RBP3.67□□□□□ -1.82
VPS53-204ENST00000437048 A0A1B0GVY2 172 aa3.67□□□□□ -1.82
VPS53-204ENST00000437048 WDFY3Q8IZQ1 3526 aa3.67□□□□□ -1.82
VPS53-204ENST00000437048 KRTAP10-8P60410 259 aa3.65□□□□□ -1.82
VPS53-204ENST00000437048 EYSQ5T1H1 3165 aa3.6□□□□□ -1.83
VPS53-204ENST00000437048 ALMS1Q8TCU4 4167 aa3.6□□□□□ -1.83
VPS53-204ENST00000437048 SPTBN5Q9NRC6 3674 aaKnown RBP3.58□□□□□ -1.84
VPS53-204ENST00000437048 OTOGQ6ZRI0 2925 aa3.56□□□□□ -1.84
VPS53-204ENST00000437048 ZFHX4Q86UP3 3567 aa3.56□□□□□ -1.84
VPS53-204ENST00000437048 KRTAP12-1P59990 96 aa3.56□□□□□ -1.84
VPS53-204ENST00000437048 FBN3Q75N90 2809 aa3.56□□□□□ -1.84
VPS53-204ENST00000437048 CSMD1Q96PZ7 3565 aa3.54□□□□□ -1.84
VPS53-204ENST00000437048 KRTAP15-1Q3LI76 137 aa3.53□□□□□ -1.84
VPS53-204ENST00000437048 ASPMQ8IZT6 3477 aa3.53□□□□□ -1.84
VPS53-204ENST00000437048 KRTAP12-2P59991 146 aa3.51□□□□□ -1.85
VPS53-204ENST00000437048 DCHS1Q96JQ0 3298 aa3.49□□□□□ -1.85
VPS53-204ENST00000437048 KRTAP10-10P60014 251 aa3.45□□□□□ -1.86
VPS53-204ENST00000437048 NBPF19A0A087WUL8 3843 aa3.44□□□□□ -1.86
VPS53-204ENST00000437048 AKAP9Q99996 3911 aa3.43□□□□□ -1.86
VPS53-204ENST00000437048 KRTAP19-4Q3LI73 84 aa3.43□□□□□ -1.86
VPS53-204ENST00000437048 RELNP78509 3460 aa3.43□□□□□ -1.86
VPS53-204ENST00000437048 LOC400499M0QZD8 3231 aa3.42□□□□□ -1.86
VPS53-204ENST00000437048 KRTAP10-6P60371 365 aaPredicted RBP3.41□□□□□ -1.86
VPS53-204ENST00000437048 SVEP1Q4LDE5 3571 aa3.36□□□□□ -1.87
VPS53-204ENST00000437048 CUBNO60494 3623 aa3.36□□□□□ -1.87
VPS53-204ENST00000437048 KRTAP3-1Q9BYR8 98 aa3.34□□□□□ -1.87
VPS53-204ENST00000437048 DMDP11532 3685 aa3.33□□□□□ -1.88
VPS53-204ENST00000437048 SMG1Q96Q15 3661 aaKnown RBP3.32□□□□□ -1.88
VPS53-204ENST00000437048 LAMA5O15230 3695 aa3.3□□□□□ -1.88
VPS53-204ENST00000437048 CMYA5Q8N3K9 4069 aa3.29□□□□□ -1.88
VPS53-204ENST00000437048 TRRAPQ9Y4A5 3859 aa3.27□□□□□ -1.89
VPS53-204ENST00000437048 KRTAP10-12P60413 245 aa3.24□□□□□ -1.89
VPS53-204ENST00000437048 KRTAP3-2Q9BYR7 98 aa3.24□□□□□ -1.89
VPS53-204ENST00000437048 DNAH3Q8TD57 4116 aa3.24□□□□□ -1.89
VPS53-204ENST00000437048 SPENQ96T58 3664 aaKnown RBP3.23□□□□□ -1.89
VPS53-204ENST00000437048 VPS13CQ709C8 3753 aa3.22□□□□□ -1.89
VPS53-204ENST00000437048 CSMD2Q7Z408 3487 aa3.21□□□□□ -1.9
VPS53-204ENST00000437048 KRTAP12-3P60328 96 aa3.19□□□□□ -1.9
VPS53-204ENST00000437048 CRCT1Q9UGL9 99 aa3.19□□□□□ -1.9
VPS53-204ENST00000437048 KRTAP3-3Q9BYR6 98 aa3.17□□□□□ -1.9
VPS53-204ENST00000437048 ANK2Q01484 3957 aa3.16□□□□□ -1.9
VPS53-204ENST00000437048 LYSTQ99698 3801 aa3.12□□□□□ -1.91
VPS53-204ENST00000437048 BSNQ9UPA5 3926 aa3.09□□□□□ -1.91
VPS53-204ENST00000437048 HECTD4Q9Y4D8 3996 aa3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms