RNA–Protein interactions for RNA: YNL138W-A

YSF3, Transcript of Component of the SF3b subcomplex of the U2 snRNP, yeastyeast

Gene YSF3, Length 258 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
YSF3YNL138W-A KOG1P38873 1557 aa7.42□□□□□ -1.22
YSF3YNL138W-A HTA1P04911 132 aaKnown RBP7.39□□□□□ -1.23
YSF3YNL138W-A HTA2P04912 132 aa7.39□□□□□ -1.23
YSF3YNL138W-A SOL3P38858 249 aa7.39□□□□□ -1.23
YSF3YNL138W-A ULI1P43604 169 aa7.39□□□□□ -1.23
YSF3YNL138W-A CKB1P43639 278 aa7.39□□□□□ -1.23
YSF3YNL138W-A TRP5P00931 707 aaKnown RBP7.38□□□□□ -1.23
YSF3YNL138W-A ABP1P15891 592 aaKnown RBP7.38□□□□□ -1.23
YSF3YNL138W-A EAP1P36041 632 aaKnown RBP7.37□□□□□ -1.23
YSF3YNL138W-A YGR273CP53329 174 aa7.36□□□□□ -1.23
YSF3YNL138W-A REF2P42073 533 aaPredicted RBP7.35□□□□□ -1.23
YSF3YNL138W-A SPB4P25808 606 aaPredicted RBP7.34□□□□□ -1.23
YSF3YNL138W-A VHR2P40041 505 aa7.34□□□□□ -1.23
YSF3YNL138W-A NST1P53935 1240 aa7.34□□□□□ -1.23
YSF3YNL138W-A IOC2Q12072 812 aa7.34□□□□□ -1.23
YSF3YNL138W-A PBS2P08018 668 aa7.32□□□□□ -1.24
YSF3YNL138W-A UBP14P38237 781 aaKnown RBP7.32□□□□□ -1.24
YSF3YNL138W-A YEL023CP39992 682 aa7.32□□□□□ -1.24
YSF3YNL138W-A LDB19Q12502 818 aa7.31□□□□□ -1.24
YSF3YNL138W-A YLR326WQ06170 240 aaKnown RBP7.3□□□□□ -1.24
YSF3YNL138W-A KEX1P09620 729 aa7.28□□□□□ -1.24
YSF3YNL138W-A ILV3P39522 585 aaKnown RBP7.28□□□□□ -1.24
YSF3YNL138W-A MPH3P0CE00 602 aa7.27□□□□□ -1.25
YSF3YNL138W-A PTC4P38089 393 aa7.27□□□□□ -1.25
YSF3YNL138W-A YDR090CQ03193 310 aa7.27□□□□□ -1.25
YSF3YNL138W-A RTG1P32607 177 aa7.26□□□□□ -1.25
YSF3YNL138W-A DSF2P38213 736 aa7.26□□□□□ -1.25
YSF3YNL138W-A JIP4Q03361 876 aa7.26□□□□□ -1.25
YSF3YNL138W-A AI4P03878 556 aa7.25□□□□□ -1.25
YSF3YNL138W-A YNL035CP53962 389 aaKnown RBP7.25□□□□□ -1.25
YSF3YNL138W-A LEU3P08638 886 aa7.24□□□□□ -1.25
YSF3YNL138W-A DAN4P47179 1161 aa7.24□□□□□ -1.25
YSF3YNL138W-A COX6P00427 148 aa7.23□□□□□ -1.25
YSF3YNL138W-A PCS60P38137 543 aaKnown RBP RIP-Chip data7.23□□□□□ -1.25not detected
YSF3YNL138W-A FKH1P40466 484 aa7.23□□□□□ -1.25
YSF3YNL138W-A RAD54P32863 898 aa7.22□□□□□ -1.25
YSF3YNL138W-A MAK21Q12176 1025 aaKnown RBP7.22□□□□□ -1.25
YSF3YNL138W-A AIR2Q12476 344 aaKnown RBP7.22□□□□□ -1.25
YSF3YNL138W-A MAM3Q12296 706 aa7.21□□□□□ -1.26
YSF3YNL138W-A SEC61P32915 480 aa7.19□□□□□ -1.26
YSF3YNL138W-A KIC1P38692 1080 aa7.19□□□□□ -1.26
YSF3YNL138W-A IES2P40154 320 aa7.19□□□□□ -1.26
YSF3YNL138W-A NCR1Q12200 1170 aa7.19□□□□□ -1.26
YSF3YNL138W-A SLI15P38283 698 aa7.18□□□□□ -1.26
YSF3YNL138W-A YJL171CP46992 396 aa7.18□□□□□ -1.26
YSF3YNL138W-A PML39Q03760 334 aa7.17□□□□□ -1.26
YSF3YNL138W-A SPA2P23201 1466 aaKnown RBP7.17□□□□□ -1.26
YSF3YNL138W-A TY1B-DR4Q07793 1604 aa7.16□□□□□ -1.26
YSF3YNL138W-A MID1P41821 548 aa7.16□□□□□ -1.26
YSF3YNL138W-A TFG1P41895 735 aaPredicted RBP7.15□□□□□ -1.26
YSF3YNL138W-A NUP42P49686 430 aaKnown RBP7.15□□□□□ -1.26
YSF3YNL138W-A DIT2P21595 489 aa7.14□□□□□ -1.27
YSF3YNL138W-A BMT6Q12291 365 aa7.11□□□□□ -1.27
YSF3YNL138W-A CDC73Q06697 393 aa7.1□□□□□ -1.27
YSF3YNL138W-A YDL129WQ07555 291 aa7.1□□□□□ -1.27
YSF3YNL138W-A ORC6P38826 435 aa7.09□□□□□ -1.27
YSF3YNL138W-A SAP30P38429 201 aa7.08□□□□□ -1.28
YSF3YNL138W-A LEO1P38439 464 aa7.08□□□□□ -1.28
YSF3YNL138W-A RPN1P38764 993 aaKnown RBP7.08□□□□□ -1.28
YSF3YNL138W-A YNR021WP53723 404 aaKnown RBP7.08□□□□□ -1.28
YSF3YNL138W-A GLC3P32775 704 aa7.07□□□□□ -1.28
YSF3YNL138W-A MPC54Q08550 464 aa7.07□□□□□ -1.28
YSF3YNL138W-A PEX29Q03370 554 aa7.06□□□□□ -1.28
YSF3YNL138W-A DPL1Q05567 589 aa7.05□□□□□ -1.28
YSF3YNL138W-A YDR344CQ05510 147 aa7.04□□□□□ -1.28
YSF3YNL138W-A TCB3Q03640 1545 aaKnown RBP7.03□□□□□ -1.28
YSF3YNL138W-A PSE1P32337 1089 aaKnown RBP7.03□□□□□ -1.28
YSF3YNL138W-A RPP1BP10622 106 aaKnown RBP7.02□□□□□ -1.29
YSF3YNL138W-A GAP1P19145 602 aaPredicted RBP7.02□□□□□ -1.29
YSF3YNL138W-A RGR1P19263 1082 aa7.02□□□□□ -1.29
YSF3YNL138W-A MVP1P40959 511 aaKnown RBP7.01□□□□□ -1.29
YSF3YNL138W-A NMA111P53920 997 aa7.01□□□□□ -1.29
YSF3YNL138W-A CSC1Q06538 782 aa7□□□□□ -1.29
YSF3YNL138W-A ATF2P53296 535 aa6.99□□□□□ -1.29
YSF3YNL138W-A ISU2Q12056 156 aa6.98□□□□□ -1.29
YSF3YNL138W-A KIN1P13185 1064 aa6.97□□□□□ -1.29
YSF3YNL138W-A PEX21P50091 288 aa6.97□□□□□ -1.29
YSF3YNL138W-A YPR109WQ06104 294 aa6.97□□□□□ -1.29
YSF3YNL138W-A TFB4Q12004 338 aa6.97□□□□□ -1.29
YSF3YNL138W-A AIM7Q12156 149 aa6.97□□□□□ -1.29
YSF3YNL138W-A ARH1P48360 493 aa6.96□□□□□ -1.3
YSF3YNL138W-A ELP4Q02884 456 aaKnown RBP6.96□□□□□ -1.3
YSF3YNL138W-A TUM1Q08686 304 aaKnown RBP6.96□□□□□ -1.3
YSF3YNL138W-A HAP5Q02516 242 aa6.95□□□□□ -1.3
YSF3YNL138W-A YRR1Q12172 810 aa6.95□□□□□ -1.3
YSF3YNL138W-A TEA1P47988 759 aa6.93□□□□□ -1.3
YSF3YNL138W-A PDR1P12383 1068 aa6.92□□□□□ -1.3
YSF3YNL138W-A CHL1P22516 861 aaPredicted RBP6.91□□□□□ -1.3
YSF3YNL138W-A PRE3P38624 215 aa6.91□□□□□ -1.3
YSF3YNL138W-A CLB5P30283 435 aa6.89□□□□□ -1.31
YSF3YNL138W-A SPT23P35210 1082 aa6.88□□□□□ -1.31
YSF3YNL138W-A BNI4P53858 892 aa6.88□□□□□ -1.31
YSF3YNL138W-A NIS1P53939 407 aa6.87□□□□□ -1.31
YSF3YNL138W-A NUD1P32336 851 aa6.85□□□□□ -1.31
YSF3YNL138W-A RAM1P22007 431 aa6.84□□□□□ -1.31
YSF3YNL138W-A GUA1P38625 525 aaKnown RBP6.84□□□□□ -1.31
YSF3YNL138W-A PTC2P39966 464 aaKnown RBP6.84□□□□□ -1.31
YSF3YNL138W-A FPK1P53739 893 aa6.83□□□□□ -1.32
YSF3YNL138W-A YPR015CQ12531 247 aa6.83□□□□□ -1.32
YSF3YNL138W-A STR2P47164 639 aa6.82□□□□□ -1.32
Retrieved 100 of 5,963 RNA–protein pairs in 33.4 ms