RNA–Protein interactions for RNA: YNL138W-A

YSF3, Transcript of Component of the SF3b subcomplex of the U2 snRNP, yeastyeast

Gene YSF3, Length 258 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
YSF3YNL138W-A MTC1P47018 478 aaKnown RBP12.31□□□□□ -0.44
YSF3YNL138W-A DRS1P32892 752 aaKnown RBP12.24□□□□□ -0.45
YSF3YNL138W-A FAP1P53971 965 aa10.55□□□□□ -0.72
YSF3YNL138W-A BFR2Q06631 534 aaKnown RBP10.51□□□□□ -0.73
YSF3YNL138W-A DIP2Q12220 943 aaPredicted RBP10.47□□□□□ -0.73
YSF3YNL138W-A AVT3P36062 692 aa10.28□□□□□ -0.76
YSF3YNL138W-A PRI1P10363 409 aa10.03□□□□□ -0.8
YSF3YNL138W-A ISW2Q08773 1120 aa10.03□□□□□ -0.8
YSF3YNL138W-A RPG1P38249 964 aaKnown RBP9.94□□□□□ -0.82
YSF3YNL138W-A AAD16Q02895 342 aa9.94□□□□□ -0.82
YSF3YNL138W-A RSE1Q04693 1361 aaKnown RBP9.9□□□□□ -0.82
YSF3YNL138W-A PRY3P47033 881 aa9.88□□□□□ -0.83
YSF3YNL138W-A TFA1P36100 482 aa9.76□□□□□ -0.85
YSF3YNL138W-A RPL17AP05740 184 aaKnown RBP9.57□□□□□ -0.88
YSF3YNL138W-A RPL17BP46990 184 aaKnown RBP9.57□□□□□ -0.88
YSF3YNL138W-A TSR3Q12094 313 aaKnown RBP9.52□□□□□ -0.89
YSF3YNL138W-A REB1P21538 810 aa9.45□□□□□ -0.9
YSF3YNL138W-A HAA1Q12753 694 aaKnown RBP9.31□□□□□ -0.92
YSF3YNL138W-A YCK3P39962 524 aa9.3□□□□□ -0.92
YSF3YNL138W-A SPT21P35209 758 aa9.19□□□□□ -0.94
YSF3YNL138W-A MRPL32P25348 183 aa9.15□□□□□ -0.94
YSF3YNL138W-A RIM101P33400 625 aa9.03□□□□□ -0.96
YSF3YNL138W-A YKR023WP36119 530 aaKnown RBP8.94□□□□□ -0.98
YSF3YNL138W-A CDC27P38042 758 aa8.8□□□□□ -1
YSF3YNL138W-A HOP09932 586 aa8.78□□□□□ -1
YSF3YNL138W-A OXP1P28273 1286 aa8.77□□□□□ -1.01
YSF3YNL138W-A TFC8Q12308 588 aa8.75□□□□□ -1.01
YSF3YNL138W-A DCD1P06773 312 aa8.73□□□□□ -1.01
YSF3YNL138W-A YGL015CP33199 130 aa8.69□□□□□ -1.02
YSF3YNL138W-A PTP3P40048 928 aa8.66□□□□□ -1.02
YSF3YNL138W-A YAH1Q12184 172 aaKnown RBP8.64□□□□□ -1.03
YSF3YNL138W-A YIL055CP40523 627 aaKnown RBP8.62□□□□□ -1.03
YSF3YNL138W-A SSP1P38871 571 aa8.55□□□□□ -1.04
YSF3YNL138W-A BCH2P36122 765 aa8.5□□□□□ -1.05
YSF3YNL138W-A YLR271WQ06152 274 aa8.5□□□□□ -1.05
YSF3YNL138W-A RSM7P47150 247 aa8.49□□□□□ -1.05
YSF3YNL138W-A UBP10P53874 792 aaPredicted RBP8.45□□□□□ -1.06
YSF3YNL138W-A MAP2P38174 421 aaKnown RBP8.44□□□□□ -1.06
YSF3YNL138W-A ARP8Q12386 881 aaKnown RBP RIP-Chip data8.41□□□□□ -1.06not detected
YSF3YNL138W-A SCY1P53009 804 aa8.4□□□□□ -1.06
YSF3YNL138W-A AI2P03876 854 aa8.36□□□□□ -1.07
YSF3YNL138W-A EPS1P40557 701 aa8.34□□□□□ -1.07
YSF3YNL138W-A BBC1P47068 1157 aa8.29□□□□□ -1.08
YSF3YNL138W-A BDF1P35817 686 aa8.28□□□□□ -1.08
YSF3YNL138W-A PSD2P53037 1138 aaKnown RBP8.27□□□□□ -1.09
YSF3YNL138W-A MGA2P40578 1113 aa8.26□□□□□ -1.09
YSF3YNL138W-A CST9Q06032 482 aa8.24□□□□□ -1.09
YSF3YNL138W-A SLX5P32828 619 aaKnown RBP8.22□□□□□ -1.09
YSF3YNL138W-A TIF4632P39936 914 aaKnown RBP8.13□□□□□ -1.11
YSF3YNL138W-A MRM1P25270 412 aa8.11□□□□□ -1.11
YSF3YNL138W-A TGL3P40308 642 aa8.07□□□□□ -1.12
YSF3YNL138W-A MON2P48563 1636 aaPredicted RBP8.03□□□□□ -1.12
YSF3YNL138W-A RQC2Q12532 1038 aaKnown RBP8.03□□□□□ -1.12
YSF3YNL138W-A DMA1P38823 416 aa8.02□□□□□ -1.13
YSF3YNL138W-A RCR1P38212 213 aa7.98□□□□□ -1.13
YSF3YNL138W-A INO80P53115 1489 aa7.95□□□□□ -1.14
YSF3YNL138W-A RTG3P38165 486 aa7.95□□□□□ -1.14
YSF3YNL138W-A RAM2P29703 316 aa7.91□□□□□ -1.14
YSF3YNL138W-A VPS29P38759 282 aa7.91□□□□□ -1.14
YSF3YNL138W-A NSR1P27476 414 aaKnown RBP RIP-Chip data7.83□□□□□ -1.16not detected
YSF3YNL138W-A YAP5P40574 245 aa7.82□□□□□ -1.16
YSF3YNL138W-A YMR1P47147 688 aaKnown RBP RIP-Chip data7.82□□□□□ -1.16not detected
YSF3YNL138W-A YFR006WP43590 535 aa7.81□□□□□ -1.16
YSF3YNL138W-A PIB1Q06651 286 aa7.81□□□□□ -1.16
YSF3YNL138W-A YOR238WQ08634 303 aa7.81□□□□□ -1.16
YSF3YNL138W-A DBP1P24784 617 aaKnown RBP7.8□□□□□ -1.16
YSF3YNL138W-A STS1P38637 319 aa7.8□□□□□ -1.16
YSF3YNL138W-A BUD31P25337 157 aaPredicted RBP7.78□□□□□ -1.16
YSF3YNL138W-A MST1P07236 462 aa7.76□□□□□ -1.17
YSF3YNL138W-A MAK11P20484 414 aaKnown RBP7.76□□□□□ -1.17
YSF3YNL138W-A UBP9P39967 754 aa7.74□□□□□ -1.17
YSF3YNL138W-A SET1P38827 1080 aaKnown RBP7.69□□□□□ -1.18
YSF3YNL138W-A COQ8P27697 501 aa7.68□□□□□ -1.18
YSF3YNL138W-A MIF2P35201 549 aa7.68□□□□□ -1.18
YSF3YNL138W-A VMA1P17255 1071 aaKnown RBP7.65□□□□□ -1.18
YSF3YNL138W-A EDS1P38073 919 aa7.65□□□□□ -1.18
YSF3YNL138W-A GTT3P39996 337 aa7.64□□□□□ -1.19
YSF3YNL138W-A DNA2P38859 1522 aa7.62□□□□□ -1.19
YSF3YNL138W-A SAS10Q12136 610 aaPredicted RBP7.58□□□□□ -1.2
YSF3YNL138W-A WSC3Q12215 556 aa7.58□□□□□ -1.2
YSF3YNL138W-A YBL029C-AQ3E756 94 aa7.58□□□□□ -1.2
YSF3YNL138W-A PTC3P34221 468 aaKnown RBP7.57□□□□□ -1.2
YSF3YNL138W-A SAM3Q08986 587 aa7.55□□□□□ -1.2
YSF3YNL138W-A VNX1P42839 908 aa7.53□□□□□ -1.2
YSF3YNL138W-A NOP53Q12080 455 aaKnown RBP7.53□□□□□ -1.2
YSF3YNL138W-A SET4P42948 560 aa7.52□□□□□ -1.21
YSF3YNL138W-A VPS70P47161 811 aa7.52□□□□□ -1.21
YSF3YNL138W-A YPR148CQ06523 435 aa7.52□□□□□ -1.21
YSF3YNL138W-A YOL036WQ08206 761 aa7.52□□□□□ -1.21
YSF3YNL138W-A GRE2Q12068 342 aaKnown RBP7.5□□□□□ -1.21
YSF3YNL138W-A GYP5Q12344 894 aa7.5□□□□□ -1.21
YSF3YNL138W-A IFH1P39520 1085 aa7.49□□□□□ -1.21
YSF3YNL138W-A ATH1P48016 1211 aa7.48□□□□□ -1.21
YSF3YNL138W-A SPP1Q03012 353 aa7.47□□□□□ -1.21
YSF3YNL138W-A SIS1P25294 352 aaKnown RBP7.46□□□□□ -1.22
YSF3YNL138W-A DCW1P36091 449 aa7.46□□□□□ -1.22
YSF3YNL138W-A GUT1P32190 709 aa7.45□□□□□ -1.22
YSF3YNL138W-A MSB4Q12317 492 aa7.45□□□□□ -1.22
YSF3YNL138W-A TIF11P38912 153 aaKnown RBP7.43□□□□□ -1.22
YSF3YNL138W-A SWR1Q05471 1514 aa7.42□□□□□ -1.22
Retrieved 100 of 5,963 RNA–protein pairs in 71 ms