RNA–Protein interactions for RNA: YNL016W

PUB1, Transcript of Poly (A)+ RNA-binding protein, yeastyeast

Gene PUB1, Length 1,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PUB1YNL016W MRM1P25270 412 aa7□□□□□ -1.29
PUB1YNL016W DBP1P24784 617 aaKnown RBP6.98□□□□□ -1.29
PUB1YNL016W YFR006WP43590 535 aa6.96□□□□□ -1.29
PUB1YNL016W YMR1P47147 688 aaKnown RBP RIP-Chip data6.95□□□□□ -1.3not detected
PUB1YNL016W ELP4Q02884 456 aaKnown RBP6.94□□□□□ -1.3
PUB1YNL016W PTC4P38089 393 aa6.92□□□□□ -1.3
PUB1YNL016W PSD2P53037 1138 aaKnown RBP6.92□□□□□ -1.3
PUB1YNL016W ABP1P15891 592 aaKnown RBP6.9□□□□□ -1.31
PUB1YNL016W YEL023CP39992 682 aa6.9□□□□□ -1.31
PUB1YNL016W HTA1P04911 132 aaKnown RBP6.89□□□□□ -1.31
PUB1YNL016W HTA2P04912 132 aa6.89□□□□□ -1.31
PUB1YNL016W STS1P38637 319 aa6.87□□□□□ -1.31
PUB1YNL016W VPS29P38759 282 aa6.86□□□□□ -1.31
PUB1YNL016W GYP5Q12344 894 aa6.86□□□□□ -1.31
PUB1YNL016W DCW1P36091 449 aa6.85□□□□□ -1.31
PUB1YNL016W SGS1P35187 1447 aa6.84□□□□□ -1.31
PUB1YNL016W HSL1P34244 1518 aa6.84□□□□□ -1.31
PUB1YNL016W SPT6P23615 1451 aaKnown RBP6.83□□□□□ -1.32
PUB1YNL016W YLR271WQ06152 274 aa6.82□□□□□ -1.32
PUB1YNL016W SPA2P23201 1466 aaKnown RBP6.81□□□□□ -1.32
PUB1YNL016W PML39Q03760 334 aa6.81□□□□□ -1.32
PUB1YNL016W ARH1P48360 493 aa6.76□□□□□ -1.33
PUB1YNL016W ECM5Q03214 1411 aa6.75□□□□□ -1.33
PUB1YNL016W DMA1P38823 416 aa6.71□□□□□ -1.33
PUB1YNL016W RTG3P38165 486 aa6.7□□□□□ -1.34
PUB1YNL016W YPL062WQ02781 134 aa6.7□□□□□ -1.34
PUB1YNL016W BUD4P47136 1447 aa6.69□□□□□ -1.34
PUB1YNL016W SPT23P35210 1082 aa6.69□□□□□ -1.34
PUB1YNL016W THO2P53552 1597 aaKnown RBP6.68□□□□□ -1.34
PUB1YNL016W HIR3P47171 1648 aa6.67□□□□□ -1.34
PUB1YNL016W RAS1P01119 309 aa6.67□□□□□ -1.34
PUB1YNL016W MDS3P53094 1487 aa6.65□□□□□ -1.34
PUB1YNL016W MID1P41821 548 aa6.62□□□□□ -1.35
PUB1YNL016W LEO1P38439 464 aa6.61□□□□□ -1.35
PUB1YNL016W TRK1P12685 1235 aa6.59□□□□□ -1.35
PUB1YNL016W REV3P14284 1504 aa6.57□□□□□ -1.36
PUB1YNL016W YML082WQ04533 649 aaKnown RBP6.56□□□□□ -1.36
PUB1YNL016W HAP5Q02516 242 aa6.55□□□□□ -1.36
PUB1YNL016W PEX29Q03370 554 aa6.55□□□□□ -1.36
PUB1YNL016W PEP1P32319 1579 aa6.55□□□□□ -1.36
PUB1YNL016W PTC2P39966 464 aaKnown RBP6.54□□□□□ -1.36
PUB1YNL016W RCR1P38212 213 aa6.53□□□□□ -1.36
PUB1YNL016W BNI4P53858 892 aa6.53□□□□□ -1.36
PUB1YNL016W XRN1P22147 1528 aaKnown RBP6.5□□□□□ -1.37
PUB1YNL016W CST9Q06032 482 aa6.49□□□□□ -1.37
PUB1YNL016W GRE2Q12068 342 aaKnown RBP6.49□□□□□ -1.37
PUB1YNL016W BPT1P14772 1559 aa6.47□□□□□ -1.37
PUB1YNL016W ATG2P53855 1592 aa6.47□□□□□ -1.37
PUB1YNL016W AMS1P22855 1083 aa6.42□□□□□ -1.38
PUB1YNL016W NST1P53935 1240 aa6.41□□□□□ -1.38
PUB1YNL016W ARP8Q12386 881 aaKnown RBP RIP-Chip data6.37□□□□□ -1.39not detected
PUB1YNL016W YCF1P39109 1515 aaKnown RBP6.36□□□□□ -1.39
PUB1YNL016W ATH1P48016 1211 aa6.35□□□□□ -1.39
PUB1YNL016W GAR1P28007 205 aaKnown RBP6.34□□□□□ -1.39
PUB1YNL016W GUT1P32190 709 aa6.34□□□□□ -1.39
PUB1YNL016W GBP2P25555 427 aaKnown RBP RIP-Chip data6.33□□□□□ -1.4not detected
PUB1YNL016W SSK2P53599 1579 aa6.33□□□□□ -1.4
PUB1YNL016W MPC54Q08550 464 aa6.32□□□□□ -1.4
PUB1YNL016W YPR015CQ12531 247 aa6.32□□□□□ -1.4
PUB1YNL016W SKI3P17883 1432 aaKnown RBP6.32□□□□□ -1.4
PUB1YNL016W MPH3P0CE00 602 aa6.31□□□□□ -1.4
PUB1YNL016W TAF2P23255 1407 aa6.3□□□□□ -1.4
PUB1YNL016W AI4P03878 556 aa6.3□□□□□ -1.4
PUB1YNL016W MIF2P35201 549 aa6.3□□□□□ -1.4
PUB1YNL016W SIN3P22579 1536 aa6.3□□□□□ -1.4
PUB1YNL016W LEU3P08638 886 aa6.29□□□□□ -1.4
PUB1YNL016W SOL3P38858 249 aa6.29□□□□□ -1.4
PUB1YNL016W MGA2P40578 1113 aa6.29□□□□□ -1.4
PUB1YNL016W NMA111P53920 997 aa6.29□□□□□ -1.4
PUB1YNL016W ILV3P39522 585 aaKnown RBP6.27□□□□□ -1.41
PUB1YNL016W GYP1Q08484 637 aa6.27□□□□□ -1.41
PUB1YNL016W SDH2P21801 266 aa6.24□□□□□ -1.41
PUB1YNL016W PTC3P34221 468 aaKnown RBP6.23□□□□□ -1.41
PUB1YNL016W UFD4P33202 1483 aa6.23□□□□□ -1.41
PUB1YNL016W RAM1P22007 431 aa6.22□□□□□ -1.41
PUB1YNL016W SSP1P38871 571 aa6.22□□□□□ -1.41
PUB1YNL016W BRE2P43132 505 aa6.22□□□□□ -1.41
PUB1YNL016W SSN2P38931 1420 aa6.21□□□□□ -1.41
PUB1YNL016W MYO2P19524 1574 aaKnown RBP6.2□□□□□ -1.42
PUB1YNL016W ESP1Q03018 1630 aa6.19□□□□□ -1.42
PUB1YNL016W MET5P47169 1442 aa6.19□□□□□ -1.42
PUB1YNL016W EDS1P38073 919 aa6.18□□□□□ -1.42
PUB1YNL016W SAS10Q12136 610 aaPredicted RBP6.18□□□□□ -1.42
PUB1YNL016W DNF1P32660 1571 aa6.17□□□□□ -1.42
PUB1YNL016W YEL077CQ3E7X8 1277 aa6.17□□□□□ -1.42
PUB1YNL016W LTE1P07866 1435 aa6.16□□□□□ -1.42
PUB1YNL016W CHD1P32657 1468 aa6.16□□□□□ -1.42
PUB1YNL016W SCC2Q04002 1493 aa6.16□□□□□ -1.42
PUB1YNL016W CDC25P04821 1589 aa6.16□□□□□ -1.42
PUB1YNL016W GCR2Q01722 534 aa6.15□□□□□ -1.43
PUB1YNL016W ESC1Q03661 1658 aaKnown RBP6.15□□□□□ -1.43
PUB1YNL016W DPL1Q05567 589 aa6.15□□□□□ -1.43
PUB1YNL016W BNI1P41832 1953 aa6.14□□□□□ -1.43
PUB1YNL016W YPK9Q12697 1472 aa6.13□□□□□ -1.43
PUB1YNL016W RPA190P10964 1664 aaKnown RBP6.13□□□□□ -1.43
PUB1YNL016W SAS4Q04003 481 aa6.12□□□□□ -1.43
PUB1YNL016W RKR1Q04781 1562 aa6.12□□□□□ -1.43
PUB1YNL016W RPO31P04051 1460 aa6.12□□□□□ -1.43
PUB1YNL016W TY2B-LR1P0C2J3 1770 aa6.09□□□□□ -1.43
PUB1YNL016W TY2B-FP0CX63 1770 aa6.09□□□□□ -1.43
Retrieved 100 of 5,963 RNA–protein pairs in 13.3 ms