RNA–Protein interactions for RNA: YNL016W

PUB1, Transcript of Poly (A)+ RNA-binding protein, yeastyeast

Gene PUB1, Length 1,362 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PUB1YNL016W FAP1P53971 965 aa13.06□□□□□ -0.32
PUB1YNL016W PRY3P47033 881 aa12.34□□□□□ -0.43
PUB1YNL016W MTC1P47018 478 aaKnown RBP12.14□□□□□ -0.47
PUB1YNL016W YCK3P39962 524 aa11.6□□□□□ -0.55
PUB1YNL016W AAD16Q02895 342 aa11.44□□□□□ -0.58
PUB1YNL016W HAA1Q12753 694 aaKnown RBP11.44□□□□□ -0.58
PUB1YNL016W PRI1P10363 409 aa11.28□□□□□ -0.6
PUB1YNL016W TSR3Q12094 313 aaKnown RBP10.58□□□□□ -0.72
PUB1YNL016W ISW2Q08773 1120 aa10.47□□□□□ -0.73
PUB1YNL016W RPG1P38249 964 aaKnown RBP10.42□□□□□ -0.74
PUB1YNL016W YGL015CP33199 130 aa10.25□□□□□ -0.77
PUB1YNL016W BUD31P25337 157 aaPredicted RBP10.22□□□□□ -0.77
PUB1YNL016W MRPL32P25348 183 aa10.15□□□□□ -0.78
PUB1YNL016W SIS1P25294 352 aaKnown RBP9.56□□□□□ -0.88
PUB1YNL016W DRS1P32892 752 aaKnown RBP9.49□□□□□ -0.89
PUB1YNL016W CDC27P38042 758 aa9.34□□□□□ -0.91
PUB1YNL016W UBP10P53874 792 aaPredicted RBP9.27□□□□□ -0.93
PUB1YNL016W MAP2P38174 421 aaKnown RBP9.25□□□□□ -0.93
PUB1YNL016W RSE1Q04693 1361 aaKnown RBP9.2□□□□□ -0.94
PUB1YNL016W UBP9P39967 754 aa9.19□□□□□ -0.94
PUB1YNL016W REB1P21538 810 aa9.17□□□□□ -0.94
PUB1YNL016W RPL17AP05740 184 aaKnown RBP9.04□□□□□ -0.96
PUB1YNL016W RPL17BP46990 184 aaKnown RBP9.04□□□□□ -0.96
PUB1YNL016W DIP2Q12220 943 aaPredicted RBP8.99□□□□□ -0.97
PUB1YNL016W TIF4632P39936 914 aaKnown RBP8.91□□□□□ -0.98
PUB1YNL016W TGL3P40308 642 aa8.9□□□□□ -0.98
PUB1YNL016W YKR023WP36119 530 aaKnown RBP8.86□□□□□ -0.99
PUB1YNL016W SCY1P53009 804 aa8.73□□□□□ -1.01
PUB1YNL016W DCD1P06773 312 aa8.73□□□□□ -1.01
PUB1YNL016W SLX5P32828 619 aaKnown RBP8.72□□□□□ -1.01
PUB1YNL016W HOP09932 586 aa8.69□□□□□ -1.02
PUB1YNL016W TFC8Q12308 588 aa8.66□□□□□ -1.02
PUB1YNL016W SPT21P35209 758 aa8.51□□□□□ -1.05
PUB1YNL016W YBL029C-AQ3E756 94 aa8.51□□□□□ -1.05
PUB1YNL016W MST1P07236 462 aa8.32□□□□□ -1.08
PUB1YNL016W BCH2P36122 765 aa8.31□□□□□ -1.08
PUB1YNL016W VNX1P42839 908 aa8.31□□□□□ -1.08
PUB1YNL016W YJL171CP46992 396 aa8.29□□□□□ -1.08
PUB1YNL016W AIR2Q12476 344 aaKnown RBP8.28□□□□□ -1.08
PUB1YNL016W SPP1Q03012 353 aa8.23□□□□□ -1.09
PUB1YNL016W YOR238WQ08634 303 aa8.19□□□□□ -1.1
PUB1YNL016W FKH1P40466 484 aa8.17□□□□□ -1.1
PUB1YNL016W AVT3P36062 692 aa8.14□□□□□ -1.11
PUB1YNL016W WSC3Q12215 556 aa8.09□□□□□ -1.12
PUB1YNL016W BMT6Q12291 365 aa8.02□□□□□ -1.13
PUB1YNL016W TIF11P38912 153 aaKnown RBP8.01□□□□□ -1.13
PUB1YNL016W BDF1P35817 686 aa7.99□□□□□ -1.13
PUB1YNL016W EPS1P40557 701 aa7.97□□□□□ -1.13
PUB1YNL016W NSR1P27476 414 aaKnown RBP RIP-Chip data7.95□□□□□ -1.14not detected
PUB1YNL016W LDB19Q12502 818 aa7.92□□□□□ -1.14
PUB1YNL016W YAP5P40574 245 aa7.87□□□□□ -1.15
PUB1YNL016W TFA1P36100 482 aa7.84□□□□□ -1.16
PUB1YNL016W RGA2Q06407 1009 aa7.81□□□□□ -1.16
PUB1YNL016W IOC2Q12072 812 aa7.81□□□□□ -1.16
PUB1YNL016W RIM101P33400 625 aa7.8□□□□□ -1.16
PUB1YNL016W ULI1P43604 169 aa7.79□□□□□ -1.16
PUB1YNL016W GTT3P39996 337 aa7.76□□□□□ -1.17
PUB1YNL016W MON2P48563 1636 aaPredicted RBP7.73□□□□□ -1.17
PUB1YNL016W INO80P53115 1489 aa7.69□□□□□ -1.18
PUB1YNL016W BFR2Q06631 534 aaKnown RBP7.65□□□□□ -1.18
PUB1YNL016W RTG1P32607 177 aa7.59□□□□□ -1.19
PUB1YNL016W BCK2P33306 851 aa7.59□□□□□ -1.2
PUB1YNL016W NCR1Q12200 1170 aa7.58□□□□□ -1.2
PUB1YNL016W EAP1P36041 632 aaKnown RBP7.5□□□□□ -1.21
PUB1YNL016W OXP1P28273 1286 aa7.48□□□□□ -1.21
PUB1YNL016W BBC1P47068 1157 aa7.48□□□□□ -1.21
PUB1YNL016W MSB4Q12317 492 aa7.48□□□□□ -1.21
PUB1YNL016W PIB1Q06651 286 aa7.47□□□□□ -1.21
PUB1YNL016W PTP3P40048 928 aa7.46□□□□□ -1.22
PUB1YNL016W RQC2Q12532 1038 aaKnown RBP7.46□□□□□ -1.22
PUB1YNL016W TRP5P00931 707 aaKnown RBP7.45□□□□□ -1.22
PUB1YNL016W SEC61P32915 480 aa7.44□□□□□ -1.22
PUB1YNL016W YNL035CP53962 389 aaKnown RBP7.42□□□□□ -1.22
PUB1YNL016W RGA1P39083 1007 aa7.41□□□□□ -1.22
PUB1YNL016W SET4P42948 560 aa7.37□□□□□ -1.23
PUB1YNL016W AI2P03876 854 aa7.36□□□□□ -1.23
PUB1YNL016W CHL1P22516 861 aaPredicted RBP7.36□□□□□ -1.23
PUB1YNL016W YIL055CP40523 627 aaKnown RBP7.36□□□□□ -1.23
PUB1YNL016W SAP30P38429 201 aa7.35□□□□□ -1.23
PUB1YNL016W YOL036WQ08206 761 aa7.35□□□□□ -1.23
PUB1YNL016W DNA2P38859 1522 aa7.34□□□□□ -1.23
PUB1YNL016W TFG1P41895 735 aaPredicted RBP7.33□□□□□ -1.24
PUB1YNL016W PRE3P38624 215 aa7.28□□□□□ -1.24
PUB1YNL016W SWR1Q05471 1514 aa7.27□□□□□ -1.25
PUB1YNL016W XDJ1P39102 459 aa7.27□□□□□ -1.25
PUB1YNL016W RSM7P47150 247 aa7.26□□□□□ -1.25
PUB1YNL016W DPS1P04802 557 aaKnown RBP7.24□□□□□ -1.25
PUB1YNL016W VRP1P37370 817 aa7.2□□□□□ -1.26
PUB1YNL016W YDL129WQ07555 291 aa7.2□□□□□ -1.26
PUB1YNL016W KOG1P38873 1557 aa7.2□□□□□ -1.26
PUB1YNL016W DAN4P47179 1161 aa7.18□□□□□ -1.26
PUB1YNL016W TAF7Q05021 590 aa7.16□□□□□ -1.26
PUB1YNL016W TY1B-DR4Q07793 1604 aa7.12□□□□□ -1.27
PUB1YNL016W SRC1Q03707 834 aa7.11□□□□□ -1.27
PUB1YNL016W TCB3Q03640 1545 aaKnown RBP7.11□□□□□ -1.27
PUB1YNL016W JIP4Q03361 876 aa7.09□□□□□ -1.27
PUB1YNL016W VMA1P17255 1071 aaKnown RBP7.04□□□□□ -1.28
PUB1YNL016W SAM3Q08986 587 aa7.03□□□□□ -1.28
PUB1YNL016W YAH1Q12184 172 aaKnown RBP7.02□□□□□ -1.29
PUB1YNL016W YDR344CQ05510 147 aa7.01□□□□□ -1.29
Retrieved 100 of 5,963 RNA–protein pairs in 18.4 ms