RNA–Protein interactions for RNA: YMR309C

NIP1, Transcript of eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3), yeastyeast

Gene NIP1, Length 2,439 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NIP1YMR309C GYP5Q12344 894 aa2.69□□□□□ -1.98
NIP1YMR309C YAH1Q12184 172 aaKnown RBP2.69□□□□□ -1.98
NIP1YMR309C GBP2P25555 427 aaKnown RBP RIP-Chip data2.68□□□□□ -1.98not detected
NIP1YMR309C PML39Q03760 334 aa2.68□□□□□ -1.98
NIP1YMR309C TRK1P12685 1235 aa2.67□□□□□ -1.98
NIP1YMR309C SPT23P35210 1082 aa2.67□□□□□ -1.98
NIP1YMR309C ARH1P48360 493 aa2.66□□□□□ -1.98
NIP1YMR309C RAS1P01119 309 aa2.63□□□□□ -1.99
NIP1YMR309C PEX29Q03370 554 aa2.63□□□□□ -1.99
NIP1YMR309C GAR1P28007 205 aaKnown RBP2.61□□□□□ -1.99
NIP1YMR309C STS1P38637 319 aa2.6□□□□□ -1.99
NIP1YMR309C VPS29P38759 282 aa2.6□□□□□ -1.99
NIP1YMR309C PTC2P39966 464 aaKnown RBP2.6□□□□□ -1.99
NIP1YMR309C BFR2Q06631 534 aaKnown RBP2.6□□□□□ -1.99
NIP1YMR309C PSD2P53037 1138 aaKnown RBP2.59□□□□□ -2
NIP1YMR309C RTG3P38165 486 aa2.57□□□□□ -2
NIP1YMR309C HAP5Q02516 242 aa2.57□□□□□ -2
NIP1YMR309C MID1P41821 548 aa2.57□□□□□ -2
NIP1YMR309C YML082WQ04533 649 aaKnown RBP2.57□□□□□ -2
NIP1YMR309C BNI4P53858 892 aa2.56□□□□□ -2
NIP1YMR309C AMS1P22855 1083 aa2.55□□□□□ -2
NIP1YMR309C YLR271WQ06152 274 aa2.53□□□□□ -2
NIP1YMR309C GCR2Q01722 534 aa2.52□□□□□ -2.01
NIP1YMR309C GRE2Q12068 342 aaKnown RBP2.52□□□□□ -2.01
NIP1YMR309C GYP1Q08484 637 aa2.51□□□□□ -2.01
NIP1YMR309C BRE2P43132 505 aa2.5□□□□□ -2.01
NIP1YMR309C YEL077CQ3E7X8 1277 aa2.48□□□□□ -2.01
NIP1YMR309C ATH1P48016 1211 aa2.47□□□□□ -2.01
NIP1YMR309C MTC5Q03897 1148 aa2.47□□□□□ -2.01
NIP1YMR309C GUT1P32190 709 aa2.43□□□□□ -2.02
NIP1YMR309C NMA111P53920 997 aa2.43□□□□□ -2.02
NIP1YMR309C MPC54Q08550 464 aa2.43□□□□□ -2.02
NIP1YMR309C ARP8Q12386 881 aaKnown RBP RIP-Chip data2.42□□□□□ -2.02not detected
NIP1YMR309C MPH3P0CE00 602 aa2.41□□□□□ -2.02
NIP1YMR309C RCR1P38212 213 aa2.41□□□□□ -2.02
NIP1YMR309C SAS4Q04003 481 aa2.41□□□□□ -2.02
NIP1YMR309C YPR015CQ12531 247 aa2.41□□□□□ -2.02
NIP1YMR309C AI4P03878 556 aa2.41□□□□□ -2.02
NIP1YMR309C MRF1P30775 413 aaPredicted RBP2.4□□□□□ -2.03
NIP1YMR309C MET22P32179 357 aa2.39□□□□□ -2.03
NIP1YMR309C CST9Q06032 482 aa2.39□□□□□ -2.03
NIP1YMR309C MIF2P35201 549 aa2.39□□□□□ -2.03
NIP1YMR309C SDH2P21801 266 aa2.38□□□□□ -2.03
NIP1YMR309C NST1P53935 1240 aa2.38□□□□□ -2.03
NIP1YMR309C ENV9Q08651 330 aa2.38□□□□□ -2.03
NIP1YMR309C DPL1Q05567 589 aa2.37□□□□□ -2.03
NIP1YMR309C AIR1P40507 360 aaKnown RBP2.36□□□□□ -2.03
NIP1YMR309C RAM1P22007 431 aa2.36□□□□□ -2.03
NIP1YMR309C PTC3P34221 468 aaKnown RBP2.36□□□□□ -2.03
NIP1YMR309C YDR444WQ04093 687 aa2.36□□□□□ -2.03
NIP1YMR309C ILV3P39522 585 aaKnown RBP2.34□□□□□ -2.03
NIP1YMR309C ERG12P07277 443 aa2.34□□□□□ -2.03
NIP1YMR309C SOL3P38858 249 aa2.34□□□□□ -2.03
NIP1YMR309C ISU2Q12056 156 aa2.34□□□□□ -2.03
NIP1YMR309C MGA2P40578 1113 aa2.33□□□□□ -2.04
NIP1YMR309C CLA4P48562 842 aa2.31□□□□□ -2.04
NIP1YMR309C SLI15P38283 698 aa2.3□□□□□ -2.04
NIP1YMR309C CDC4P07834 779 aa2.3□□□□□ -2.04
NIP1YMR309C YDL176WQ12027 708 aa2.3□□□□□ -2.04
NIP1YMR309C LCB5Q06147 687 aaKnown RBP2.29□□□□□ -2.04
NIP1YMR309C PDR1P12383 1068 aa2.29□□□□□ -2.04
NIP1YMR309C EDS1P38073 919 aa2.29□□□□□ -2.04
NIP1YMR309C SSP1P38871 571 aa2.29□□□□□ -2.04
NIP1YMR309C TFA1P36100 482 aa2.27□□□□□ -2.05
NIP1YMR309C YGR273CP53329 174 aa2.27□□□□□ -2.05
NIP1YMR309C NRD1P53617 575 aaKnown RBP RIP-Chip data2.27□□□□□ -2.05not detected
NIP1YMR309C CST6P40535 587 aa2.26□□□□□ -2.05
NIP1YMR309C PRT1P06103 763 aaKnown RBP2.26□□□□□ -2.05
NIP1YMR309C FRK1Q03002 865 aaPredicted RBP2.26□□□□□ -2.05
NIP1YMR309C TRK2P28584 889 aa2.25□□□□□ -2.05
NIP1YMR309C MAK11P20484 414 aaKnown RBP2.24□□□□□ -2.05
NIP1YMR309C LAM6Q08001 693 aa2.23□□□□□ -2.05
NIP1YMR309C LSB3P43603 459 aaKnown RBP2.23□□□□□ -2.05
NIP1YMR309C YGR035CP53222 116 aa2.23□□□□□ -2.05
NIP1YMR309C CDC73Q06697 393 aa2.23□□□□□ -2.05
NIP1YMR309C CAF120P53836 1060 aa2.22□□□□□ -2.05
NIP1YMR309C PUS1Q12211 544 aaKnown RBP2.22□□□□□ -2.05
NIP1YMR309C COQ8P27697 501 aa2.21□□□□□ -2.06
NIP1YMR309C BUD20Q08004 166 aaPredicted RBP2.21□□□□□ -2.06
NIP1YMR309C SPT16P32558 1035 aaKnown RBP2.21□□□□□ -2.06
NIP1YMR309C HST3P53687 447 aa2.21□□□□□ -2.06
NIP1YMR309C RRD1P40454 393 aaKnown RBP2.2□□□□□ -2.06
NIP1YMR309C RPP1BP10622 106 aaKnown RBP2.2□□□□□ -2.06
NIP1YMR309C ASH1P34233 588 aa2.2□□□□□ -2.06
NIP1YMR309C HED1Q03937 162 aa2.2□□□□□ -2.06
NIP1YMR309C ICP55P40051 511 aa2.19□□□□□ -2.06
NIP1YMR309C BDP1P46678 594 aa2.17□□□□□ -2.06
NIP1YMR309C KEX1P09620 729 aa2.16□□□□□ -2.06
NIP1YMR309C AFT1P22149 690 aa2.16□□□□□ -2.06
NIP1YMR309C NPL4P33755 580 aa2.16□□□□□ -2.06
NIP1YMR309C YPR204WQ08995 1032 aa2.16□□□□□ -2.06
NIP1YMR309C ACO2P39533 789 aa2.15□□□□□ -2.07
NIP1YMR309C ISM1P48526 1002 aa2.15□□□□□ -2.07
NIP1YMR309C PEX21P50091 288 aa2.15□□□□□ -2.07
NIP1YMR309C YRR1Q12172 810 aa2.15□□□□□ -2.07
NIP1YMR309C GCD11P32481 527 aaKnown RBP2.15□□□□□ -2.07
NIP1YMR309C STR2P47164 639 aa2.15□□□□□ -2.07
NIP1YMR309C PAT1P25644 796 aaKnown RBP2.14□□□□□ -2.07
NIP1YMR309C YJR115WP47152 169 aa2.14□□□□□ -2.07
NIP1YMR309C HPF1Q05164 967 aa2.13□□□□□ -2.07
Retrieved 100 of 5,963 RNA–protein pairs in 48.2 ms