RNA–Protein interactions for RNA: YMR309C

NIP1, Transcript of eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3), yeastyeast

Gene NIP1, Length 2,439 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NIP1YMR309C FAP1P53971 965 aa5.46□□□□□ -1.54
NIP1YMR309C PRY3P47033 881 aa5.15□□□□□ -1.59
NIP1YMR309C MTC1P47018 478 aaKnown RBP4.78□□□□□ -1.64
NIP1YMR309C HAA1Q12753 694 aaKnown RBP4.76□□□□□ -1.65
NIP1YMR309C AAD16Q02895 342 aa4.68□□□□□ -1.66
NIP1YMR309C YCK3P39962 524 aa4.67□□□□□ -1.66
NIP1YMR309C PRI1P10363 409 aa4.54□□□□□ -1.68
NIP1YMR309C TSR3Q12094 313 aaKnown RBP4.28□□□□□ -1.72
NIP1YMR309C BUD31P25337 157 aaPredicted RBP4.25□□□□□ -1.73
NIP1YMR309C YGL015CP33199 130 aa4.23□□□□□ -1.73
NIP1YMR309C ISW2Q08773 1120 aa4.22□□□□□ -1.73
NIP1YMR309C RPG1P38249 964 aaKnown RBP4.18□□□□□ -1.74
NIP1YMR309C MRPL32P25348 183 aa4.16□□□□□ -1.74
NIP1YMR309C SIS1P25294 352 aaKnown RBP4.04□□□□□ -1.76
NIP1YMR309C UBP9P39967 754 aa3.85□□□□□ -1.79
NIP1YMR309C UBP10P53874 792 aaPredicted RBP3.74□□□□□ -1.81
NIP1YMR309C MAP2P38174 421 aaKnown RBP3.72□□□□□ -1.81
NIP1YMR309C CDC27P38042 758 aa3.7□□□□□ -1.82
NIP1YMR309C REB1P21538 810 aa3.67□□□□□ -1.82
NIP1YMR309C TIF4632P39936 914 aaKnown RBP3.65□□□□□ -1.82
NIP1YMR309C RSE1Q04693 1361 aaKnown RBP3.62□□□□□ -1.83
NIP1YMR309C TGL3P40308 642 aa3.6□□□□□ -1.83
NIP1YMR309C RPL17AP05740 184 aaKnown RBP3.57□□□□□ -1.84
NIP1YMR309C RPL17BP46990 184 aaKnown RBP3.57□□□□□ -1.84
NIP1YMR309C DRS1P32892 752 aaKnown RBP3.56□□□□□ -1.84
NIP1YMR309C SLX5P32828 619 aaKnown RBP3.52□□□□□ -1.85
NIP1YMR309C SCY1P53009 804 aa3.5□□□□□ -1.85
NIP1YMR309C YJL171CP46992 396 aa3.46□□□□□ -1.85
NIP1YMR309C YKR023WP36119 530 aaKnown RBP3.44□□□□□ -1.86
NIP1YMR309C DIP2Q12220 943 aaPredicted RBP3.44□□□□□ -1.86
NIP1YMR309C YBL029C-AQ3E756 94 aa3.44□□□□□ -1.86
NIP1YMR309C HOP09932 586 aa3.43□□□□□ -1.86
NIP1YMR309C DCD1P06773 312 aa3.42□□□□□ -1.86
NIP1YMR309C TFC8Q12308 588 aa3.39□□□□□ -1.87
NIP1YMR309C SPP1Q03012 353 aa3.36□□□□□ -1.87
NIP1YMR309C VNX1P42839 908 aa3.35□□□□□ -1.87
NIP1YMR309C AIR2Q12476 344 aaKnown RBP3.34□□□□□ -1.87
NIP1YMR309C YOR238WQ08634 303 aa3.31□□□□□ -1.88
NIP1YMR309C FKH1P40466 484 aa3.3□□□□□ -1.88
NIP1YMR309C BMT6Q12291 365 aa3.3□□□□□ -1.88
NIP1YMR309C WSC3Q12215 556 aa3.29□□□□□ -1.88
NIP1YMR309C MST1P07236 462 aa3.29□□□□□ -1.88
NIP1YMR309C SPT21P35209 758 aa3.25□□□□□ -1.89
NIP1YMR309C BCH2P36122 765 aa3.24□□□□□ -1.89
NIP1YMR309C TIF11P38912 153 aaKnown RBP3.24□□□□□ -1.89
NIP1YMR309C RGA2Q06407 1009 aa3.23□□□□□ -1.89
NIP1YMR309C LDB19Q12502 818 aa3.19□□□□□ -1.9
NIP1YMR309C GTT3P39996 337 aa3.17□□□□□ -1.9
NIP1YMR309C ULI1P43604 169 aa3.15□□□□□ -1.91
NIP1YMR309C YAP5P40574 245 aa3.14□□□□□ -1.91
NIP1YMR309C NSR1P27476 414 aaKnown RBP RIP-Chip data3.12□□□□□ -1.91not detected
NIP1YMR309C BDF1P35817 686 aa3.12□□□□□ -1.91
NIP1YMR309C EPS1P40557 701 aa3.12□□□□□ -1.91
NIP1YMR309C BCK2P33306 851 aa3.1□□□□□ -1.91
NIP1YMR309C IOC2Q12072 812 aa3.09□□□□□ -1.91
NIP1YMR309C NCR1Q12200 1170 aa3.07□□□□□ -1.92
NIP1YMR309C RTG1P32607 177 aa3.05□□□□□ -1.92
NIP1YMR309C RGA1P39083 1007 aa3.05□□□□□ -1.92
NIP1YMR309C EAP1P36041 632 aaKnown RBP3.02□□□□□ -1.93
NIP1YMR309C AVT3P36062 692 aa3.02□□□□□ -1.93
NIP1YMR309C TFG1P41895 735 aaPredicted RBP3.01□□□□□ -1.93
NIP1YMR309C MSB4Q12317 492 aa2.99□□□□□ -1.93
NIP1YMR309C CHL1P22516 861 aaPredicted RBP2.98□□□□□ -1.93
NIP1YMR309C SEC61P32915 480 aa2.98□□□□□ -1.93
NIP1YMR309C YNL035CP53962 389 aaKnown RBP2.97□□□□□ -1.93
NIP1YMR309C DPS1P04802 557 aaKnown RBP2.96□□□□□ -1.94
NIP1YMR309C SAP30P38429 201 aa2.96□□□□□ -1.94
NIP1YMR309C TRP5P00931 707 aaKnown RBP2.95□□□□□ -1.94
NIP1YMR309C RIM101P33400 625 aa2.95□□□□□ -1.94
NIP1YMR309C BBC1P47068 1157 aa2.95□□□□□ -1.94
NIP1YMR309C PIB1Q06651 286 aa2.95□□□□□ -1.94
NIP1YMR309C XDJ1P39102 459 aa2.94□□□□□ -1.94
NIP1YMR309C SET4P42948 560 aa2.92□□□□□ -1.94
NIP1YMR309C PRE3P38624 215 aa2.92□□□□□ -1.94
NIP1YMR309C VRP1P37370 817 aa2.91□□□□□ -1.94
NIP1YMR309C PTP3P40048 928 aa2.91□□□□□ -1.94
NIP1YMR309C YOL036WQ08206 761 aa2.9□□□□□ -1.95
NIP1YMR309C YIL055CP40523 627 aaKnown RBP2.88□□□□□ -1.95
NIP1YMR309C YDL129WQ07555 291 aa2.88□□□□□ -1.95
NIP1YMR309C AI2P03876 854 aa2.83□□□□□ -1.96
NIP1YMR309C JIP4Q03361 876 aa2.82□□□□□ -1.96
NIP1YMR309C SRC1Q03707 834 aa2.82□□□□□ -1.96
NIP1YMR309C OXP1P28273 1286 aa2.81□□□□□ -1.96
NIP1YMR309C ELP4Q02884 456 aaKnown RBP2.8□□□□□ -1.96
NIP1YMR309C RSM7P47150 247 aa2.79□□□□□ -1.96
NIP1YMR309C DAN4P47179 1161 aa2.79□□□□□ -1.96
NIP1YMR309C YPL062WQ02781 134 aa2.73□□□□□ -1.97
NIP1YMR309C ABP1P15891 592 aaKnown RBP2.72□□□□□ -1.97
NIP1YMR309C VMA1P17255 1071 aaKnown RBP2.72□□□□□ -1.97
NIP1YMR309C HTA1P04911 132 aaKnown RBP2.72□□□□□ -1.97
NIP1YMR309C HTA2P04912 132 aa2.72□□□□□ -1.97
NIP1YMR309C PTC4P38089 393 aa2.72□□□□□ -1.97
NIP1YMR309C SAM3Q08986 587 aa2.72□□□□□ -1.97
NIP1YMR309C DBP1P24784 617 aaKnown RBP2.71□□□□□ -1.98
NIP1YMR309C YEL023CP39992 682 aa2.7□□□□□ -1.98
NIP1YMR309C YFR006WP43590 535 aa2.7□□□□□ -1.98
NIP1YMR309C YMR1P47147 688 aaKnown RBP RIP-Chip data2.7□□□□□ -1.98not detected
NIP1YMR309C YDR344CQ05510 147 aa2.7□□□□□ -1.98
NIP1YMR309C MRM1P25270 412 aa2.69□□□□□ -1.98
NIP1YMR309C DCW1P36091 449 aa2.69□□□□□ -1.98
Retrieved 100 of 5,963 RNA–protein pairs in 62.8 ms