RNA–Protein interactions for RNA: YGR135W

PRE9, Transcript of Alpha 3 subunit of the 20S proteasome, yeastyeast

Gene PRE9, Length 777 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE9YGR135W GRE2Q12068 342 aaKnown RBP7.28□□□□□ -1.24
PRE9YGR135W BMT6Q12291 365 aa7.28□□□□□ -1.24
PRE9YGR135W DCW1P36091 449 aa7.27□□□□□ -1.25
PRE9YGR135W NCR1Q12200 1170 aa7.27□□□□□ -1.25
PRE9YGR135W COQ8P27697 501 aa7.26□□□□□ -1.25
PRE9YGR135W EDS1P38073 919 aa7.26□□□□□ -1.25
PRE9YGR135W PTC3P34221 468 aaKnown RBP7.25□□□□□ -1.25
PRE9YGR135W YEL023CP39992 682 aa7.24□□□□□ -1.25
PRE9YGR135W TFG1P41895 735 aaPredicted RBP7.24□□□□□ -1.25
PRE9YGR135W ATH1P48016 1211 aa7.24□□□□□ -1.25
PRE9YGR135W DAN4P47179 1161 aa7.23□□□□□ -1.25
PRE9YGR135W GUT1P32190 709 aa7.22□□□□□ -1.25
PRE9YGR135W PTC4P38089 393 aa7.22□□□□□ -1.25
PRE9YGR135W NOP53Q12080 455 aaKnown RBP7.21□□□□□ -1.26
PRE9YGR135W YDL129WQ07555 291 aa7.16□□□□□ -1.26
PRE9YGR135W SAP30P38429 201 aa7.12□□□□□ -1.27
PRE9YGR135W NST1P53935 1240 aa7.09□□□□□ -1.27
PRE9YGR135W SET1P38827 1080 aaKnown RBP7.08□□□□□ -1.28
PRE9YGR135W AI4P03878 556 aa7.07□□□□□ -1.28
PRE9YGR135W SOL3P38858 249 aa7.07□□□□□ -1.28
PRE9YGR135W PML39Q03760 334 aa7.07□□□□□ -1.28
PRE9YGR135W MPH3P0CE00 602 aa7.06□□□□□ -1.28
PRE9YGR135W YGR273CP53329 174 aa7.05□□□□□ -1.28
PRE9YGR135W CHL1P22516 861 aaPredicted RBP7.04□□□□□ -1.28
PRE9YGR135W LEU3P08638 886 aa7.03□□□□□ -1.28
PRE9YGR135W PRE3P38624 215 aa7.03□□□□□ -1.28
PRE9YGR135W IFH1P39520 1085 aa6.99□□□□□ -1.29
PRE9YGR135W ILV3P39522 585 aaKnown RBP6.99□□□□□ -1.29
PRE9YGR135W MID1P41821 548 aa6.97□□□□□ -1.29
PRE9YGR135W PEX29Q03370 554 aa6.97□□□□□ -1.29
PRE9YGR135W ELP4Q02884 456 aaKnown RBP6.96□□□□□ -1.3
PRE9YGR135W SAS10Q12136 610 aaPredicted RBP6.96□□□□□ -1.3
PRE9YGR135W ARH1P48360 493 aa6.95□□□□□ -1.3
PRE9YGR135W BCK2P33306 851 aa6.94□□□□□ -1.3
PRE9YGR135W KEX1P09620 729 aa6.92□□□□□ -1.3
PRE9YGR135W YDR344CQ05510 147 aa6.92□□□□□ -1.3
PRE9YGR135W SLI15P38283 698 aa6.91□□□□□ -1.3
PRE9YGR135W YPR148CQ06523 435 aa6.9□□□□□ -1.3
PRE9YGR135W HAP5Q02516 242 aa6.89□□□□□ -1.31
PRE9YGR135W YLR326WQ06170 240 aaKnown RBP6.89□□□□□ -1.31
PRE9YGR135W MPC54Q08550 464 aa6.89□□□□□ -1.31
PRE9YGR135W SPT23P35210 1082 aa6.88□□□□□ -1.31
PRE9YGR135W VHR2P40041 505 aa6.88□□□□□ -1.31
PRE9YGR135W UBP14P38237 781 aaKnown RBP6.87□□□□□ -1.31
PRE9YGR135W DMA2P53924 522 aa6.86□□□□□ -1.31
PRE9YGR135W DPL1Q05567 589 aa6.86□□□□□ -1.31
PRE9YGR135W RAD54P32863 898 aa6.85□□□□□ -1.31
PRE9YGR135W BNI4P53858 892 aa6.85□□□□□ -1.31
PRE9YGR135W VRP1P37370 817 aa6.84□□□□□ -1.31
PRE9YGR135W NMA111P53920 997 aa6.83□□□□□ -1.32
PRE9YGR135W RPP1BP10622 106 aaKnown RBP6.82□□□□□ -1.32
PRE9YGR135W PCS60P38137 543 aaKnown RBP RIP-Chip data6.82□□□□□ -1.32not detected
PRE9YGR135W RPN1P38764 993 aaKnown RBP6.82□□□□□ -1.32
PRE9YGR135W PTC2P39966 464 aaKnown RBP6.81□□□□□ -1.32
PRE9YGR135W REF2P42073 533 aaPredicted RBP6.81□□□□□ -1.32
PRE9YGR135W KIC1P38692 1080 aa6.8□□□□□ -1.32
PRE9YGR135W XDJ1P39102 459 aa6.8□□□□□ -1.32
PRE9YGR135W VPS70P47161 811 aa6.8□□□□□ -1.32
PRE9YGR135W YML082WQ04533 649 aaKnown RBP6.79□□□□□ -1.32
PRE9YGR135W ISU2Q12056 156 aa6.79□□□□□ -1.32
PRE9YGR135W YDR090CQ03193 310 aa6.78□□□□□ -1.32
PRE9YGR135W CDC73Q06697 393 aa6.77□□□□□ -1.33
PRE9YGR135W MAK21Q12176 1025 aaKnown RBP6.75□□□□□ -1.33
PRE9YGR135W CKB1P43639 278 aa6.73□□□□□ -1.33
PRE9YGR135W SPB4P25808 606 aaPredicted RBP6.71□□□□□ -1.34
PRE9YGR135W COX6P00427 148 aa6.7□□□□□ -1.34
PRE9YGR135W CSC1Q06538 782 aa6.69□□□□□ -1.34
PRE9YGR135W PEX21P50091 288 aa6.68□□□□□ -1.34
PRE9YGR135W GAP1P19145 602 aaPredicted RBP6.67□□□□□ -1.34
PRE9YGR135W RAM1P22007 431 aa6.67□□□□□ -1.34
PRE9YGR135W TFB4Q12004 338 aa6.67□□□□□ -1.34
PRE9YGR135W RLF2Q12495 606 aa6.67□□□□□ -1.34
PRE9YGR135W ORC6P38826 435 aa6.66□□□□□ -1.34
PRE9YGR135W YPR015CQ12531 247 aa6.66□□□□□ -1.34
PRE9YGR135W DPS1P04802 557 aaKnown RBP6.65□□□□□ -1.34
PRE9YGR135W PBS2P08018 668 aa6.64□□□□□ -1.35
PRE9YGR135W PDR1P12383 1068 aa6.64□□□□□ -1.35
PRE9YGR135W GYP1Q08484 637 aa6.62□□□□□ -1.35
PRE9YGR135W YRR1Q12172 810 aa6.62□□□□□ -1.35
PRE9YGR135W SGS1P35187 1447 aa6.61□□□□□ -1.35
PRE9YGR135W SAS4Q04003 481 aa6.6□□□□□ -1.35
PRE9YGR135W TUM1Q08686 304 aaKnown RBP6.6□□□□□ -1.35
PRE9YGR135W MVP1P40959 511 aaKnown RBP6.58□□□□□ -1.36
PRE9YGR135W MAM3Q12296 706 aa6.58□□□□□ -1.36
PRE9YGR135W SPA2P23201 1466 aaKnown RBP6.58□□□□□ -1.36
PRE9YGR135W NUD1P32336 851 aa6.57□□□□□ -1.36
PRE9YGR135W DSF2P38213 736 aa6.57□□□□□ -1.36
PRE9YGR135W RGR1P19263 1082 aa6.55□□□□□ -1.36
PRE9YGR135W NPL4P33755 580 aa6.55□□□□□ -1.36
PRE9YGR135W PSE1P32337 1089 aaKnown RBP6.54□□□□□ -1.36
PRE9YGR135W STR2P47164 639 aa6.54□□□□□ -1.36
PRE9YGR135W PRT1P06103 763 aaKnown RBP6.53□□□□□ -1.36
PRE9YGR135W BUD20Q08004 166 aaPredicted RBP6.53□□□□□ -1.36
PRE9YGR135W ISM1P48526 1002 aa6.52□□□□□ -1.37
PRE9YGR135W YPR109WQ06104 294 aa6.52□□□□□ -1.37
PRE9YGR135W MRF1P30775 413 aaPredicted RBP6.51□□□□□ -1.37
PRE9YGR135W IES2P40154 320 aa6.51□□□□□ -1.37
PRE9YGR135W AMS1P22855 1083 aa6.5□□□□□ -1.37
PRE9YGR135W CLB5P30283 435 aa6.5□□□□□ -1.37
PRE9YGR135W SSN2P38931 1420 aa6.5□□□□□ -1.37
Retrieved 100 of 5,963 RNA–protein pairs in 24.5 ms