RNA–Protein interactions for RNA: YGR135W

PRE9, Transcript of Alpha 3 subunit of the 20S proteasome, yeastyeast

Gene PRE9, Length 777 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE9YGR135W MTC1P47018 478 aaKnown RBP12.24□□□□□ -0.45
PRE9YGR135W DRS1P32892 752 aaKnown RBP11.55□□□□□ -0.56
PRE9YGR135W FAP1P53971 965 aa10.87□□□□□ -0.67
PRE9YGR135W PRI1P10363 409 aa10.24□□□□□ -0.77
PRE9YGR135W PRY3P47033 881 aa10.19□□□□□ -0.78
PRE9YGR135W AAD16Q02895 342 aa10.17□□□□□ -0.78
PRE9YGR135W ISW2Q08773 1120 aa10.15□□□□□ -0.78
PRE9YGR135W DIP2Q12220 943 aaPredicted RBP10.07□□□□□ -0.8
PRE9YGR135W RPG1P38249 964 aaKnown RBP9.99□□□□□ -0.81
PRE9YGR135W AVT3P36062 692 aa9.74□□□□□ -0.85
PRE9YGR135W RSE1Q04693 1361 aaKnown RBP9.73□□□□□ -0.85
PRE9YGR135W BFR2Q06631 534 aaKnown RBP9.67□□□□□ -0.86
PRE9YGR135W TSR3Q12094 313 aaKnown RBP9.66□□□□□ -0.86
PRE9YGR135W YCK3P39962 524 aa9.61□□□□□ -0.87
PRE9YGR135W HAA1Q12753 694 aaKnown RBP9.61□□□□□ -0.87
PRE9YGR135W RPL17AP05740 184 aaKnown RBP9.39□□□□□ -0.91
PRE9YGR135W RPL17BP46990 184 aaKnown RBP9.39□□□□□ -0.91
PRE9YGR135W REB1P21538 810 aa9.37□□□□□ -0.91
PRE9YGR135W MRPL32P25348 183 aa9.33□□□□□ -0.92
PRE9YGR135W SPT21P35209 758 aa8.99□□□□□ -0.97
PRE9YGR135W TFA1P36100 482 aa8.94□□□□□ -0.98
PRE9YGR135W YGL015CP33199 130 aa8.92□□□□□ -0.98
PRE9YGR135W YKR023WP36119 530 aaKnown RBP8.84□□□□□ -0.99
PRE9YGR135W CDC27P38042 758 aa8.83□□□□□ -1
PRE9YGR135W RIM101P33400 625 aa8.7□□□□□ -1.02
PRE9YGR135W TFC8Q12308 588 aa8.69□□□□□ -1.02
PRE9YGR135W HOP09932 586 aa8.66□□□□□ -1.02
PRE9YGR135W UBP10P53874 792 aaPredicted RBP8.65□□□□□ -1.02
PRE9YGR135W DCD1P06773 312 aa8.59□□□□□ -1.03
PRE9YGR135W MAP2P38174 421 aaKnown RBP8.56□□□□□ -1.04
PRE9YGR135W RQC2Q12532 1038 aaKnown RBP8.44□□□□□ -1.06
PRE9YGR135W SCY1P53009 804 aa8.42□□□□□ -1.06
PRE9YGR135W OXP1P28273 1286 aa8.39□□□□□ -1.07
PRE9YGR135W BCH2P36122 765 aa8.39□□□□□ -1.07
PRE9YGR135W SLX5P32828 619 aaKnown RBP8.33□□□□□ -1.08
PRE9YGR135W YIL055CP40523 627 aaKnown RBP8.32□□□□□ -1.08
PRE9YGR135W TIF4632P39936 914 aaKnown RBP8.3□□□□□ -1.08
PRE9YGR135W PTP3P40048 928 aa8.3□□□□□ -1.08
PRE9YGR135W TGL3P40308 642 aa8.23□□□□□ -1.09
PRE9YGR135W EPS1P40557 701 aa8.21□□□□□ -1.1
PRE9YGR135W RSM7P47150 247 aa8.18□□□□□ -1.1
PRE9YGR135W YAH1Q12184 172 aaKnown RBP8.17□□□□□ -1.1
PRE9YGR135W BDF1P35817 686 aa8.16□□□□□ -1.1
PRE9YGR135W BBC1P47068 1157 aa8.13□□□□□ -1.11
PRE9YGR135W BUD31P25337 157 aaPredicted RBP8.11□□□□□ -1.11
PRE9YGR135W AI2P03876 854 aa8.09□□□□□ -1.11
PRE9YGR135W YLR271WQ06152 274 aa8.04□□□□□ -1.12
PRE9YGR135W SSP1P38871 571 aa8□□□□□ -1.13
PRE9YGR135W ARP8Q12386 881 aaKnown RBP RIP-Chip data7.99□□□□□ -1.13not detected
PRE9YGR135W UBP9P39967 754 aa7.98□□□□□ -1.13
PRE9YGR135W NSR1P27476 414 aaKnown RBP RIP-Chip data7.95□□□□□ -1.14not detected
PRE9YGR135W PSD2P53037 1138 aaKnown RBP7.93□□□□□ -1.14
PRE9YGR135W YOR238WQ08634 303 aa7.9□□□□□ -1.14
PRE9YGR135W MST1P07236 462 aa7.89□□□□□ -1.15
PRE9YGR135W YAP5P40574 245 aa7.87□□□□□ -1.15
PRE9YGR135W MGA2P40578 1113 aa7.81□□□□□ -1.16
PRE9YGR135W MRM1P25270 412 aa7.8□□□□□ -1.16
PRE9YGR135W TAF7Q05021 590 aa7.75□□□□□ -1.17
PRE9YGR135W CST9Q06032 482 aa7.75□□□□□ -1.17
PRE9YGR135W SIS1P25294 352 aaKnown RBP7.74□□□□□ -1.17
PRE9YGR135W YBL029C-AQ3E756 94 aa7.73□□□□□ -1.17
PRE9YGR135W DMA1P38823 416 aa7.71□□□□□ -1.18
PRE9YGR135W GTT3P39996 337 aa7.7□□□□□ -1.18
PRE9YGR135W RTG3P38165 486 aa7.67□□□□□ -1.18
PRE9YGR135W VNX1P42839 908 aa7.67□□□□□ -1.18
PRE9YGR135W YMR1P47147 688 aaKnown RBP RIP-Chip data7.64□□□□□ -1.19not detected
PRE9YGR135W WSC3Q12215 556 aa7.63□□□□□ -1.19
PRE9YGR135W SPP1Q03012 353 aa7.62□□□□□ -1.19
PRE9YGR135W PIB1Q06651 286 aa7.62□□□□□ -1.19
PRE9YGR135W VPS29P38759 282 aa7.61□□□□□ -1.19
PRE9YGR135W DBP1P24784 617 aaKnown RBP7.58□□□□□ -1.2
PRE9YGR135W TIF11P38912 153 aaKnown RBP7.56□□□□□ -1.2
PRE9YGR135W RCR1P38212 213 aa7.54□□□□□ -1.2
PRE9YGR135W STS1P38637 319 aa7.54□□□□□ -1.2
PRE9YGR135W MSB4Q12317 492 aa7.54□□□□□ -1.2
PRE9YGR135W YFR006WP43590 535 aa7.53□□□□□ -1.2
PRE9YGR135W VMA1P17255 1071 aaKnown RBP7.5□□□□□ -1.21
PRE9YGR135W EAP1P36041 632 aaKnown RBP7.49□□□□□ -1.21
PRE9YGR135W ULI1P43604 169 aa7.48□□□□□ -1.21
PRE9YGR135W YOL036WQ08206 761 aa7.48□□□□□ -1.21
PRE9YGR135W SAM3Q08986 587 aa7.46□□□□□ -1.22
PRE9YGR135W FKH1P40466 484 aa7.44□□□□□ -1.22
PRE9YGR135W SET4P42948 560 aa7.44□□□□□ -1.22
PRE9YGR135W LDB19Q12502 818 aa7.44□□□□□ -1.22
PRE9YGR135W IOC2Q12072 812 aa7.43□□□□□ -1.22
PRE9YGR135W ABP1P15891 592 aaKnown RBP7.4□□□□□ -1.22
PRE9YGR135W AIR2Q12476 344 aaKnown RBP7.4□□□□□ -1.22
PRE9YGR135W MAK11P20484 414 aaKnown RBP7.39□□□□□ -1.23
PRE9YGR135W TRP5P00931 707 aaKnown RBP7.38□□□□□ -1.23
PRE9YGR135W RAM2P29703 316 aa7.38□□□□□ -1.23
PRE9YGR135W LEO1P38439 464 aa7.36□□□□□ -1.23
PRE9YGR135W YJL171CP46992 396 aa7.36□□□□□ -1.23
PRE9YGR135W GYP5Q12344 894 aa7.36□□□□□ -1.23
PRE9YGR135W RTG1P32607 177 aa7.33□□□□□ -1.24
PRE9YGR135W YNL035CP53962 389 aaKnown RBP7.33□□□□□ -1.24
PRE9YGR135W HTA1P04911 132 aaKnown RBP7.3□□□□□ -1.24
PRE9YGR135W HTA2P04912 132 aa7.3□□□□□ -1.24
PRE9YGR135W SEC61P32915 480 aa7.3□□□□□ -1.24
PRE9YGR135W MIF2P35201 549 aa7.3□□□□□ -1.24
PRE9YGR135W JIP4Q03361 876 aa7.28□□□□□ -1.24
Retrieved 100 of 5,963 RNA–protein pairs in 36.7 ms