RNA–Protein interactions for RNA: YEL012W

UBC8, Transcript of Ubiquitin-conjugating enzyme that regulates gluconeogenesis, yeast

Gene UBC8, Length 657 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC8	YEL012W	TY2B-LR1	P0C2J3	1770 aa		7.51	□□□□□ -1.21
UBC8	YEL012W	TY2B-F	P0CX63	1770 aa		7.51	□□□□□ -1.21
UBC8	YEL012W	TY2B-GR2	P0CX64	1770 aa		7.51	□□□□□ -1.21
UBC8	YEL012W	TY2B-C	P25384	1770 aa		7.51	□□□□□ -1.21
UBC8	YEL012W	TY2B-DR2	Q03494	1770 aa		7.51	□□□□□ -1.21
UBC8	YEL012W	TY1B-DR1	Q03855	1755 aa		7.51	□□□□□ -1.21
UBC8	YEL012W	TY2B-DR3	Q07791	1770 aa	Known RBP	7.51	□□□□□ -1.21
UBC8	YEL012W	TY2B-OR1	Q12113	1770 aa		7.51	□□□□□ -1.21
UBC8	YEL012W	TY2B-DR1	Q12472	1770 aa		7.51	□□□□□ -1.21
UBC8	YEL012W	TY2B-OR2	Q12501	1770 aa		7.51	□□□□□ -1.21
UBC8	YEL012W	CHD1	P32657	1468 aa		7.5	□□□□□ -1.21
UBC8	YEL012W	TY1B-BR	Q12193	1756 aa		7.5	□□□□□ -1.21
UBC8	YEL012W	TY1B-GR3	Q12316	1755 aa		7.5	□□□□□ -1.21
UBC8	YEL012W	TY1B-OR	Q92393	1755 aa		7.5	□□□□□ -1.21
UBC8	YEL012W	YPK9	Q12697	1472 aa		7.49	□□□□□ -1.21
UBC8	YEL012W	MYO2	P19524	1574 aa	Known RBP	7.49	□□□□□ -1.21
UBC8	YEL012W	WSC3	Q12215	556 aa		7.47	□□□□□ -1.21
UBC8	YEL012W	BNI1	P41832	1953 aa		7.47	□□□□□ -1.21
UBC8	YEL012W	RPO31	P04051	1460 aa		7.47	□□□□□ -1.21
UBC8	YEL012W	MET5	P47169	1442 aa		7.45	□□□□□ -1.22
UBC8	YEL012W	RKR1	Q04781	1562 aa		7.43	□□□□□ -1.22
UBC8	YEL012W	RPA190	P10964	1664 aa	Known RBP	7.43	□□□□□ -1.22
UBC8	YEL012W	LTE1	P07866	1435 aa		7.43	□□□□□ -1.22
UBC8	YEL012W	RTG3	P38165	486 aa		7.42	□□□□□ -1.22
UBC8	YEL012W	LEO1	P38439	464 aa		7.41	□□□□□ -1.22
UBC8	YEL012W	GTT3	P39996	337 aa		7.41	□□□□□ -1.22
UBC8	YEL012W	PAN1	P32521	1480 aa		7.41	□□□□□ -1.22
UBC8	YEL012W	TY2B-B	Q12491	1770 aa		7.41	□□□□□ -1.22
UBC8	YEL012W	LEU3	P08638	886 aa		7.4	□□□□□ -1.22
UBC8	YEL012W	VPS29	P38759	282 aa		7.4	□□□□□ -1.22
UBC8	YEL012W	TIF11	P38912	153 aa	Known RBP	7.4	□□□□□ -1.22
UBC8	YEL012W	TY1B-H	O13535	1793 aa		7.39	□□□□□ -1.23
UBC8	YEL012W	TY1B-DR5	P0C2I2	1755 aa		7.39	□□□□□ -1.23
UBC8	YEL012W	TY1B-DR6	P0C2I3	1755 aa		7.39	□□□□□ -1.23
UBC8	YEL012W	TY1B-LR2	P0C2I5	1755 aa		7.39	□□□□□ -1.23
UBC8	YEL012W	TY1B-LR3	P0C2I6	1755 aa	Known RBP	7.39	□□□□□ -1.23
UBC8	YEL012W	TY1B-PR1	P0C2I9	1755 aa	Known RBP	7.39	□□□□□ -1.23
UBC8	YEL012W	TY1B-PR2	P0C2J0	1756 aa		7.39	□□□□□ -1.23
UBC8	YEL012W	TY1B-PR3	P0C2J1	1755 aa	Known RBP	7.39	□□□□□ -1.23
UBC8	YEL012W	TY1B-JR1	P47098	1755 aa		7.39	□□□□□ -1.23
UBC8	YEL012W	TY1B-ML2	Q03434	1755 aa	Known RBP	7.39	□□□□□ -1.23
UBC8	YEL012W	TY1B-ER1	Q03612	1755 aa		7.39	□□□□□ -1.23
UBC8	YEL012W	TY1B-ML1	Q04711	1755 aa	Known RBP	7.39	□□□□□ -1.23
UBC8	YEL012W	TY1B-GR2	Q12269	1755 aa		7.39	□□□□□ -1.23
UBC8	YEL012W	TY1B-OL	Q12273	1755 aa		7.39	□□□□□ -1.23
UBC8	YEL012W	TY1B-PL	Q12414	1755 aa	Known RBP	7.39	□□□□□ -1.23
UBC8	YEL012W	YJL171C	P46992	396 aa		7.39	□□□□□ -1.23
UBC8	YEL012W	AIR2	Q12476	344 aa	Known RBP	7.39	□□□□□ -1.23
UBC8	YEL012W	SET1	P38827	1080 aa	Known RBP	7.38	□□□□□ -1.23
UBC8	YEL012W	FKH1	P40466	484 aa		7.38	□□□□□ -1.23
UBC8	YEL012W	ITT1	Q04638	464 aa		7.38	□□□□□ -1.23
UBC8	YEL012W	PIB1	Q06651	286 aa		7.37	□□□□□ -1.23
UBC8	YEL012W	TY1B-DR3	Q99231	1755 aa		7.37	□□□□□ -1.23
UBC8	YEL012W	MAK11	P20484	414 aa	Known RBP	7.36	□□□□□ -1.23
UBC8	YEL012W	YPR148C	Q06523	435 aa		7.35	□□□□□ -1.23
UBC8	YEL012W	GEA2	P39993	1459 aa	Known RBP	7.34	□□□□□ -1.23
UBC8	YEL012W	YRF1-1	P0CX20	1796 aa		7.31	□□□□□ -1.24
UBC8	YEL012W	YRF1-5	P0CX21	1796 aa		7.31	□□□□□ -1.24
UBC8	YEL012W	YRF1-8	P0CX22	1796 aa		7.31	□□□□□ -1.24
UBC8	YEL012W	TOP2	P06786	1428 aa	Known RBP	7.31	□□□□□ -1.24
UBC8	YEL012W	YFR006W	P43590	535 aa		7.31	□□□□□ -1.24
UBC8	YEL012W	MMS22	Q06164	1454 aa		7.3	□□□□□ -1.24
UBC8	YEL012W	ABP1	P15891	592 aa	Known RBP	7.3	□□□□□ -1.24
UBC8	YEL012W	MMS1	Q06211	1407 aa		7.29	□□□□□ -1.24
UBC8	YEL012W	LDB19	Q12502	818 aa		7.28	□□□□□ -1.24
UBC8	YEL012W	TRM732	Q03496	1420 aa		7.27	□□□□□ -1.24
UBC8	YEL012W	STS1	P38637	319 aa		7.27	□□□□□ -1.25
UBC8	YEL012W	ULI1	P43604	169 aa		7.27	□□□□□ -1.25
UBC8	YEL012W	VPS70	P47161	811 aa		7.27	□□□□□ -1.25
UBC8	YEL012W	TAF7	Q05021	590 aa		7.27	□□□□□ -1.25
UBC8	YEL012W	COQ8	P27697	501 aa		7.26	□□□□□ -1.25
UBC8	YEL012W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	7.26	□□□□□ -1.25	not detected
UBC8	YEL012W	IRC20	Q06554	1556 aa		7.25	□□□□□ -1.25
UBC8	YEL012W	IFH1	P39520	1085 aa		7.24	□□□□□ -1.25
UBC8	YEL012W	IOC2	Q12072	812 aa		7.24	□□□□□ -1.25
UBC8	YEL012W	BMT6	Q12291	365 aa		7.24	□□□□□ -1.25
UBC8	YEL012W	VPS15	P22219	1454 aa		7.24	□□□□□ -1.25
UBC8	YEL012W	NUP159	P40477	1460 aa		7.24	□□□□□ -1.25
UBC8	YEL012W	TY1B-JR2	P47100	1755 aa	Known RBP	7.23	□□□□□ -1.25
UBC8	YEL012W	TY1B-ER2	Q03619	1755 aa		7.23	□□□□□ -1.25
UBC8	YEL012W	TY1B-MR1	Q04214	1755 aa		7.23	□□□□□ -1.25
UBC8	YEL012W	TY1B-MR2	Q04670	1755 aa	Known RBP	7.23	□□□□□ -1.25
UBC8	YEL012W	TY1B-LR1	Q12088	1755 aa	Known RBP	7.23	□□□□□ -1.25
UBC8	YEL012W	TY1B-NL1	Q12112	1755 aa		7.23	□□□□□ -1.25
UBC8	YEL012W	TY1B-GR1	Q12141	1755 aa		7.23	□□□□□ -1.25
UBC8	YEL012W	TY1B-BL	Q12490	1755 aa		7.23	□□□□□ -1.25
UBC8	YEL012W	EDS1	P38073	919 aa		7.23	□□□□□ -1.25
UBC8	YEL012W	CKB1	P43639	278 aa		7.23	□□□□□ -1.25
UBC8	YEL012W	DBP1	P24784	617 aa	Known RBP	7.22	□□□□□ -1.25
UBC8	YEL012W	NTE1	Q04958	1679 aa		7.22	□□□□□ -1.25
UBC8	YEL012W	MSB4	Q12317	492 aa		7.21	□□□□□ -1.26
UBC8	YEL012W	DRS2	P39524	1355 aa		7.2	□□□□□ -1.26
UBC8	YEL012W	NOP53	Q12080	455 aa	Known RBP	7.2	□□□□□ -1.26
UBC8	YEL012W	SPP41	P38904	1435 aa		7.19	□□□□□ -1.26
UBC8	YEL012W	POL1	P13382	1468 aa		7.19	□□□□□ -1.26
UBC8	YEL012W	EAP1	P36041	632 aa	Known RBP	7.19	□□□□□ -1.26
UBC8	YEL012W	DNF2	Q12675	1612 aa		7.17	□□□□□ -1.26
UBC8	YEL012W	SET4	P42948	560 aa		7.17	□□□□□ -1.26
UBC8	YEL012W	YOL036W	Q08206	761 aa		7.17	□□□□□ -1.26
UBC8	YEL012W	RPO21	P04050	1733 aa	Known RBP	7.17	□□□□□ -1.26

Retrieved 100 of 5,963 RNA–protein pairs in 49.6 ms