RNA–Protein interactions for RNA: YEL012W

UBC8, Transcript of Ubiquitin-conjugating enzyme that regulates gluconeogenesis, yeastyeast

Gene UBC8, Length 657 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBC8YEL012W MTC1P47018 478 aaKnown RBP11.76□□□□□ -0.53
UBC8YEL012W DRS1P32892 752 aaKnown RBP11.52□□□□□ -0.57
UBC8YEL012W FAP1P53971 965 aa11.17□□□□□ -0.62
UBC8YEL012W PRY3P47033 881 aa10.51□□□□□ -0.73
UBC8YEL012W AAD16Q02895 342 aa10.19□□□□□ -0.78
UBC8YEL012W PRI1P10363 409 aa10.17□□□□□ -0.78
UBC8YEL012W BFR2Q06631 534 aaKnown RBP10.06□□□□□ -0.8
UBC8YEL012W HAA1Q12753 694 aaKnown RBP9.86□□□□□ -0.83
UBC8YEL012W YCK3P39962 524 aa9.85□□□□□ -0.83
UBC8YEL012W ISW2Q08773 1120 aa9.84□□□□□ -0.83
UBC8YEL012W AVT3P36062 692 aa9.73□□□□□ -0.85
UBC8YEL012W DIP2Q12220 943 aaPredicted RBP9.73□□□□□ -0.85
UBC8YEL012W RPG1P38249 964 aaKnown RBP9.71□□□□□ -0.86
UBC8YEL012W TFA1P36100 482 aa9.69□□□□□ -0.86
UBC8YEL012W TSR3Q12094 313 aaKnown RBP9.56□□□□□ -0.88
UBC8YEL012W MON2P48563 1636 aaPredicted RBP9.34□□□□□ -0.91
UBC8YEL012W INO80P53115 1489 aa9.31□□□□□ -0.92
UBC8YEL012W RSE1Q04693 1361 aaKnown RBP9.3□□□□□ -0.92
UBC8YEL012W MRPL32P25348 183 aa9.23□□□□□ -0.93
UBC8YEL012W RPL17AP05740 184 aaKnown RBP9.01□□□□□ -0.97
UBC8YEL012W YGL015CP33199 130 aa9.01□□□□□ -0.97
UBC8YEL012W RPL17BP46990 184 aaKnown RBP9.01□□□□□ -0.97
UBC8YEL012W REB1P21538 810 aa9□□□□□ -0.97
UBC8YEL012W DNA2P38859 1522 aa8.91□□□□□ -0.98
UBC8YEL012W SWR1Q05471 1514 aa8.85□□□□□ -0.99
UBC8YEL012W KOG1P38873 1557 aa8.69□□□□□ -1.02
UBC8YEL012W TY1B-DR4Q07793 1604 aa8.69□□□□□ -1.02
UBC8YEL012W TCB3Q03640 1545 aaKnown RBP8.63□□□□□ -1.03
UBC8YEL012W CDC27P38042 758 aa8.62□□□□□ -1.03
UBC8YEL012W SPT21P35209 758 aa8.58□□□□□ -1.04
UBC8YEL012W YKR023WP36119 530 aaKnown RBP8.54□□□□□ -1.04
UBC8YEL012W BUD31P25337 157 aaPredicted RBP8.51□□□□□ -1.05
UBC8YEL012W UBP10P53874 792 aaPredicted RBP8.5□□□□□ -1.05
UBC8YEL012W RIM101P33400 625 aa8.45□□□□□ -1.06
UBC8YEL012W MAP2P38174 421 aaKnown RBP8.43□□□□□ -1.06
UBC8YEL012W SGS1P35187 1447 aa8.42□□□□□ -1.06
UBC8YEL012W HOP09932 586 aa8.38□□□□□ -1.07
UBC8YEL012W HSL1P34244 1518 aa8.37□□□□□ -1.07
UBC8YEL012W TFC8Q12308 588 aa8.36□□□□□ -1.07
UBC8YEL012W SPT6P23615 1451 aaKnown RBP8.34□□□□□ -1.07
UBC8YEL012W DCD1P06773 312 aa8.34□□□□□ -1.07
UBC8YEL012W RQC2Q12532 1038 aaKnown RBP8.3□□□□□ -1.08
UBC8YEL012W PTP3P40048 928 aa8.24□□□□□ -1.09
UBC8YEL012W ECM5Q03214 1411 aa8.23□□□□□ -1.09
UBC8YEL012W SPA2P23201 1466 aaKnown RBP8.23□□□□□ -1.09
UBC8YEL012W OXP1P28273 1286 aa8.22□□□□□ -1.09
UBC8YEL012W TIF4632P39936 914 aaKnown RBP8.18□□□□□ -1.1
UBC8YEL012W HIR3P47171 1648 aa8.18□□□□□ -1.1
UBC8YEL012W SCY1P53009 804 aa8.17□□□□□ -1.1
UBC8YEL012W SSP1P38871 571 aa8.15□□□□□ -1.1
UBC8YEL012W TGL3P40308 642 aa8.13□□□□□ -1.11
UBC8YEL012W SLX5P32828 619 aaKnown RBP8.12□□□□□ -1.11
UBC8YEL012W BUD4P47136 1447 aa8.12□□□□□ -1.11
UBC8YEL012W THO2P53552 1597 aaKnown RBP8.1□□□□□ -1.11
UBC8YEL012W MDS3P53094 1487 aa8.09□□□□□ -1.11
UBC8YEL012W UBP9P39967 754 aa8.09□□□□□ -1.11
UBC8YEL012W BCH2P36122 765 aa8.08□□□□□ -1.12
UBC8YEL012W SIS1P25294 352 aaKnown RBP8.06□□□□□ -1.12
UBC8YEL012W DMA1P38823 416 aa8.05□□□□□ -1.12
UBC8YEL012W YAH1Q12184 172 aaKnown RBP8.04□□□□□ -1.12
UBC8YEL012W YLR271WQ06152 274 aa8.01□□□□□ -1.13
UBC8YEL012W XRN1P22147 1528 aaKnown RBP7.99□□□□□ -1.13
UBC8YEL012W PEP1P32319 1579 aa7.99□□□□□ -1.13
UBC8YEL012W YIL055CP40523 627 aaKnown RBP7.97□□□□□ -1.13
UBC8YEL012W REV3P14284 1504 aa7.94□□□□□ -1.14
UBC8YEL012W ARP8Q12386 881 aaKnown RBP RIP-Chip data7.93□□□□□ -1.14not detected
UBC8YEL012W ATG2P53855 1592 aa7.92□□□□□ -1.14
UBC8YEL012W RSM7P47150 247 aa7.91□□□□□ -1.14
UBC8YEL012W EPS1P40557 701 aa7.88□□□□□ -1.15
UBC8YEL012W BPT1P14772 1559 aa7.87□□□□□ -1.15
UBC8YEL012W BDF1P35817 686 aa7.85□□□□□ -1.15
UBC8YEL012W MGA2P40578 1113 aa7.81□□□□□ -1.16
UBC8YEL012W TAF2P23255 1407 aa7.79□□□□□ -1.16
UBC8YEL012W PSD2P53037 1138 aaKnown RBP7.78□□□□□ -1.16
UBC8YEL012W CST9Q06032 482 aa7.78□□□□□ -1.16
UBC8YEL012W SKI3P17883 1432 aaKnown RBP7.76□□□□□ -1.17
UBC8YEL012W AI2P03876 854 aa7.75□□□□□ -1.17
UBC8YEL012W YCF1P39109 1515 aaKnown RBP7.73□□□□□ -1.17
UBC8YEL012W BBC1P47068 1157 aa7.73□□□□□ -1.17
UBC8YEL012W MST1P07236 462 aa7.71□□□□□ -1.18
UBC8YEL012W SSN2P38931 1420 aa7.69□□□□□ -1.18
UBC8YEL012W SSK2P53599 1579 aa7.69□□□□□ -1.18
UBC8YEL012W SIN3P22579 1536 aa7.68□□□□□ -1.18
UBC8YEL012W YOR238WQ08634 303 aa7.67□□□□□ -1.18
UBC8YEL012W YBL029C-AQ3E756 94 aa7.66□□□□□ -1.18
UBC8YEL012W UFD4P33202 1483 aa7.62□□□□□ -1.19
UBC8YEL012W ESP1Q03018 1630 aa7.61□□□□□ -1.19
UBC8YEL012W NSR1P27476 414 aaKnown RBP RIP-Chip data7.61□□□□□ -1.19not detected
UBC8YEL012W SAS10Q12136 610 aaPredicted RBP7.6□□□□□ -1.19
UBC8YEL012W YAP5P40574 245 aa7.56□□□□□ -1.2
UBC8YEL012W VNX1P42839 908 aa7.56□□□□□ -1.2
UBC8YEL012W DNF1P32660 1571 aa7.55□□□□□ -1.2
UBC8YEL012W SCC2Q04002 1493 aa7.55□□□□□ -1.2
UBC8YEL012W RAM2P29703 316 aa7.54□□□□□ -1.2
UBC8YEL012W MRM1P25270 412 aa7.53□□□□□ -1.2
UBC8YEL012W ESC1Q03661 1658 aaKnown RBP7.53□□□□□ -1.2
UBC8YEL012W CDC25P04821 1589 aa7.52□□□□□ -1.21
UBC8YEL012W MIF2P35201 549 aa7.52□□□□□ -1.21
UBC8YEL012W SPP1Q03012 353 aa7.52□□□□□ -1.21
UBC8YEL012W RCR1P38212 213 aa7.51□□□□□ -1.21
Retrieved 100 of 5,963 RNA–protein pairs in 9.4 ms