RNA–Protein interactions for RNA: YDL041W

YDL041W, Transcript of Dubious open reading frame, yeast

Gene YDL041W, Length 354 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
YDL041W	YDL041W	ULI1	P43604	169 aa		4.86	□□□□□ -1.63
YDL041W	YDL041W	REF2	P42073	533 aa	Predicted RBP	4.85	□□□□□ -1.63
YDL041W	YDL041W	TRP5	P00931	707 aa	Known RBP	4.84	□□□□□ -1.63
YDL041W	YDL041W	SPB4	P25808	606 aa	Predicted RBP	4.84	□□□□□ -1.63
YDL041W	YDL041W	YEL023C	P39992	682 aa		4.83	□□□□□ -1.64
YDL041W	YDL041W	YGR273C	P53329	174 aa		4.83	□□□□□ -1.64
YDL041W	YDL041W	PBS2	P08018	668 aa		4.82	□□□□□ -1.64
YDL041W	YDL041W	VHR2	P40041	505 aa		4.82	□□□□□ -1.64
YDL041W	YDL041W	JIP4	Q03361	876 aa		4.82	□□□□□ -1.64
YDL041W	YDL041W	MAK21	Q12176	1025 aa	Known RBP	4.82	□□□□□ -1.64
YDL041W	YDL041W	LEU3	P08638	886 aa		4.81	□□□□□ -1.64
YDL041W	YDL041W	LDB19	Q12502	818 aa		4.81	□□□□□ -1.64
YDL041W	YDL041W	AI4	P03878	556 aa		4.8	□□□□□ -1.64
YDL041W	YDL041W	PTC4	P38089	393 aa		4.8	□□□□□ -1.64
YDL041W	YDL041W	YNL035C	P53962	389 aa	Known RBP	4.8	□□□□□ -1.64
YDL041W	YDL041W	IOC2	Q12072	812 aa		4.8	□□□□□ -1.64
YDL041W	YDL041W	DSF2	P38213	736 aa		4.79	□□□□□ -1.64
YDL041W	YDL041W	KIC1	P38692	1080 aa		4.79	□□□□□ -1.64
YDL041W	YDL041W	SOL3	P38858	249 aa		4.79	□□□□□ -1.64
YDL041W	YDL041W	KEX1	P09620	729 aa		4.78	□□□□□ -1.64
YDL041W	YDL041W	MPH3	P0CE00	602 aa		4.78	□□□□□ -1.64
YDL041W	YDL041W	UBP14	P38237	781 aa	Known RBP	4.78	□□□□□ -1.64
YDL041W	YDL041W	NST1	P53935	1240 aa		4.78	□□□□□ -1.64
YDL041W	YDL041W	YLR326W	Q06170	240 aa	Known RBP	4.78	□□□□□ -1.64
YDL041W	YDL041W	COX6	P00427	148 aa		4.77	□□□□□ -1.65
YDL041W	YDL041W	RTG1	P32607	177 aa		4.77	□□□□□ -1.65
YDL041W	YDL041W	RAD54	P32863	898 aa		4.77	□□□□□ -1.65
YDL041W	YDL041W	SEC61	P32915	480 aa		4.77	□□□□□ -1.65
YDL041W	YDL041W	MAM3	Q12296	706 aa		4.77	□□□□□ -1.65
YDL041W	YDL041W	TFG1	P41895	735 aa	Predicted RBP	4.76	□□□□□ -1.65
YDL041W	YDL041W	DAN4	P47179	1161 aa		4.76	□□□□□ -1.65
YDL041W	YDL041W	SIS1	P25294	352 aa	Known RBP	4.75	□□□□□ -1.65
YDL041W	YDL041W	YDR090C	Q03193	310 aa		4.75	□□□□□ -1.65
YDL041W	YDL041W	ILV3	P39522	585 aa	Known RBP	4.74	□□□□□ -1.65
YDL041W	YDL041W	IES2	P40154	320 aa		4.74	□□□□□ -1.65
YDL041W	YDL041W	FKH1	P40466	484 aa		4.74	□□□□□ -1.65
YDL041W	YDL041W	NCR1	Q12200	1170 aa		4.73	□□□□□ -1.65
YDL041W	YDL041W	RPP1B	P10622	106 aa	Known RBP	4.72	□□□□□ -1.65
YDL041W	YDL041W	PCS60	P38137	543 aa	Known RBP RIP-Chip data	4.72	□□□□□ -1.65	not detected
YDL041W	YDL041W	PML39	Q03760	334 aa		4.72	□□□□□ -1.65
YDL041W	YDL041W	SLI15	P38283	698 aa		4.71	□□□□□ -1.66
YDL041W	YDL041W	YDL129W	Q07555	291 aa		4.71	□□□□□ -1.66
YDL041W	YDL041W	PEX29	Q03370	554 aa		4.7	□□□□□ -1.66
YDL041W	YDL041W	AIR2	Q12476	344 aa	Known RBP	4.69	□□□□□ -1.66
YDL041W	YDL041W	LEO1	P38439	464 aa		4.68	□□□□□ -1.66
YDL041W	YDL041W	RPN1	P38764	993 aa	Known RBP	4.68	□□□□□ -1.66
YDL041W	YDL041W	YJL171C	P46992	396 aa		4.68	□□□□□ -1.66
YDL041W	YDL041W	YNR021W	P53723	404 aa	Known RBP	4.68	□□□□□ -1.66
YDL041W	YDL041W	SAP30	P38429	201 aa		4.67	□□□□□ -1.66
YDL041W	YDL041W	MID1	P41821	548 aa		4.67	□□□□□ -1.66
YDL041W	YDL041W	NUP42	P49686	430 aa	Known RBP	4.67	□□□□□ -1.66
YDL041W	YDL041W	ORC6	P38826	435 aa		4.66	□□□□□ -1.66
YDL041W	YDL041W	MPC54	Q08550	464 aa		4.66	□□□□□ -1.66
YDL041W	YDL041W	DIT2	P21595	489 aa		4.65	□□□□□ -1.67
YDL041W	YDL041W	PSE1	P32337	1089 aa	Known RBP	4.65	□□□□□ -1.67
YDL041W	YDL041W	DPL1	Q05567	589 aa		4.65	□□□□□ -1.67
YDL041W	YDL041W	BMT6	Q12291	365 aa		4.65	□□□□□ -1.67
YDL041W	YDL041W	GLC3	P32775	704 aa		4.64	□□□□□ -1.67
YDL041W	YDL041W	PEX21	P50091	288 aa		4.64	□□□□□ -1.67
YDL041W	YDL041W	ATF2	P53296	535 aa		4.64	□□□□□ -1.67
YDL041W	YDL041W	CSC1	Q06538	782 aa		4.64	□□□□□ -1.67
YDL041W	YDL041W	CDC73	Q06697	393 aa		4.64	□□□□□ -1.67
YDL041W	YDL041W	TFB4	Q12004	338 aa		4.63	□□□□□ -1.67
YDL041W	YDL041W	AIM7	Q12156	149 aa		4.63	□□□□□ -1.67
YDL041W	YDL041W	GAP1	P19145	602 aa	Predicted RBP	4.61	□□□□□ -1.67
YDL041W	YDL041W	CLB5	P30283	435 aa		4.61	□□□□□ -1.67
YDL041W	YDL041W	ISU2	Q12056	156 aa		4.61	□□□□□ -1.67
YDL041W	YDL041W	MVP1	P40959	511 aa	Known RBP	4.6	□□□□□ -1.67
YDL041W	YDL041W	ARH1	P48360	493 aa		4.6	□□□□□ -1.67
YDL041W	YDL041W	NMA111	P53920	997 aa		4.6	□□□□□ -1.67
YDL041W	YDL041W	HAP5	Q02516	242 aa		4.6	□□□□□ -1.67
YDL041W	YDL041W	ELP4	Q02884	456 aa	Known RBP	4.6	□□□□□ -1.67
YDL041W	YDL041W	RGR1	P19263	1082 aa		4.59	□□□□□ -1.67
YDL041W	YDL041W	TEA1	P47988	759 aa		4.59	□□□□□ -1.67
YDL041W	YDL041W	KIN1	P13185	1064 aa		4.58	□□□□□ -1.68
YDL041W	YDL041W	TUM1	Q08686	304 aa	Known RBP	4.58	□□□□□ -1.68
YDL041W	YDL041W	PRE3	P38624	215 aa		4.57	□□□□□ -1.68
YDL041W	YDL041W	YPR109W	Q06104	294 aa		4.57	□□□□□ -1.68
YDL041W	YDL041W	YRR1	Q12172	810 aa		4.57	□□□□□ -1.68
YDL041W	YDL041W	CHL1	P22516	861 aa	Predicted RBP	4.56	□□□□□ -1.68
YDL041W	YDL041W	BNI4	P53858	892 aa		4.56	□□□□□ -1.68
YDL041W	YDL041W	SPT23	P35210	1082 aa		4.55	□□□□□ -1.68
YDL041W	YDL041W	YDR344C	Q05510	147 aa		4.55	□□□□□ -1.68
YDL041W	YDL041W	PTC2	P39966	464 aa	Known RBP	4.54	□□□□□ -1.68
YDL041W	YDL041W	YMR196W	Q04336	1088 aa		4.53	□□□□□ -1.68
YDL041W	YDL041W	NUD1	P32336	851 aa		4.52	□□□□□ -1.69
YDL041W	YDL041W	NPL4	P33755	580 aa		4.52	□□□□□ -1.69
YDL041W	YDL041W	NIS1	P53939	407 aa		4.51	□□□□□ -1.69
YDL041W	YDL041W	SSA2	P10592	639 aa	Known RBP	4.5	□□□□□ -1.69
YDL041W	YDL041W	PDR1	P12383	1068 aa		4.5	□□□□□ -1.69
YDL041W	YDL041W	CSN12	P47130	423 aa		4.49	□□□□□ -1.69
YDL041W	YDL041W	FPK1	P53739	893 aa		4.49	□□□□□ -1.69
YDL041W	YDL041W	YML082W	Q04533	649 aa	Known RBP	4.49	□□□□□ -1.69
YDL041W	YDL041W	GLN1	P32288	370 aa	Known RBP	4.48	□□□□□ -1.69
YDL041W	YDL041W	HGH1	P48362	394 aa	Known RBP	4.48	□□□□□ -1.69
YDL041W	YDL041W	RTF1	P53064	558 aa		4.48	□□□□□ -1.69
YDL041W	YDL041W	SIT4	P20604	311 aa		4.47	□□□□□ -1.69
YDL041W	YDL041W	RAM1	P22007	431 aa		4.47	□□□□□ -1.69
YDL041W	YDL041W	STR2	P47164	639 aa		4.47	□□□□□ -1.69
YDL041W	YDL041W	HST2	P53686	357 aa		4.47	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 66.2 ms