RNA–Protein interactions for RNA: YBR135W

CKS1, Transcript of Cyclin-dependent protein kinase regulatory subunit and adaptor, yeastyeast

Gene CKS1, Length 453 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CKS1YBR135W YNR021WP53723 404 aaKnown RBP8.92□□□□□ -0.98
CKS1YBR135W LDB19Q12502 818 aa8.92□□□□□ -0.98
CKS1YBR135W MAK21Q12176 1025 aaKnown RBP8.9□□□□□ -0.98
CKS1YBR135W IES2P40154 320 aa8.89□□□□□ -0.99
CKS1YBR135W SAM3Q08986 587 aa8.89□□□□□ -0.99
CKS1YBR135W BMT6Q12291 365 aa8.89□□□□□ -0.99
CKS1YBR135W ULI1P43604 169 aa8.88□□□□□ -0.99
CKS1YBR135W GRE2Q12068 342 aaKnown RBP8.88□□□□□ -0.99
CKS1YBR135W IOC2Q12072 812 aa8.88□□□□□ -0.99
CKS1YBR135W COX6P00427 148 aa8.86□□□□□ -0.99
CKS1YBR135W GUT1P32190 709 aa8.86□□□□□ -0.99
CKS1YBR135W ATH1P48016 1211 aa8.86□□□□□ -0.99
CKS1YBR135W NUP42P49686 430 aaKnown RBP8.85□□□□□ -0.99
CKS1YBR135W DMA2P53924 522 aa8.84□□□□□ -0.99
CKS1YBR135W DIT2P21595 489 aa8.81□□□□□ -1
CKS1YBR135W GLC3P32775 704 aa8.81□□□□□ -1
CKS1YBR135W UBP14P38237 781 aaKnown RBP8.81□□□□□ -1
CKS1YBR135W VHR2P40041 505 aa8.81□□□□□ -1
CKS1YBR135W AIM7Q12156 149 aa8.81□□□□□ -1
CKS1YBR135W KIN1P13185 1064 aa8.8□□□□□ -1
CKS1YBR135W YDR090CQ03193 310 aa8.8□□□□□ -1
CKS1YBR135W GYP5Q12344 894 aa8.8□□□□□ -1
CKS1YBR135W YGR273CP53329 174 aa8.79□□□□□ -1
CKS1YBR135W YLR326WQ06170 240 aaKnown RBP8.79□□□□□ -1
CKS1YBR135W SOL3P38858 249 aa8.76□□□□□ -1.01
CKS1YBR135W YOL036WQ08206 761 aa8.75□□□□□ -1.01
CKS1YBR135W ABP1P15891 592 aaKnown RBP8.74□□□□□ -1.01
CKS1YBR135W MSB4Q12317 492 aa8.74□□□□□ -1.01
CKS1YBR135W KEX1P09620 729 aa8.71□□□□□ -1.02
CKS1YBR135W EAP1P36041 632 aaKnown RBP8.71□□□□□ -1.02
CKS1YBR135W NST1P53935 1240 aa8.71□□□□□ -1.02
CKS1YBR135W RAD54P32863 898 aa8.7□□□□□ -1.02
CKS1YBR135W DCW1P36091 449 aa8.7□□□□□ -1.02
CKS1YBR135W KIC1P38692 1080 aa8.7□□□□□ -1.02
CKS1YBR135W SET4P42948 560 aa8.69□□□□□ -1.02
CKS1YBR135W RTG1P32607 177 aa8.68□□□□□ -1.02
CKS1YBR135W PCS60P38137 543 aaKnown RBP RIP-Chip data8.68□□□□□ -1.02not detected
CKS1YBR135W ATF2P53296 535 aa8.68□□□□□ -1.02
CKS1YBR135W HTA1P04911 132 aaKnown RBP8.66□□□□□ -1.02
CKS1YBR135W HTA2P04912 132 aa8.66□□□□□ -1.02
CKS1YBR135W NCR1Q12200 1170 aa8.65□□□□□ -1.02
CKS1YBR135W TRP5P00931 707 aaKnown RBP8.63□□□□□ -1.03
CKS1YBR135W PSE1P32337 1089 aaKnown RBP8.63□□□□□ -1.03
CKS1YBR135W AI4P03878 556 aa8.62□□□□□ -1.03
CKS1YBR135W MPH3P0CE00 602 aa8.62□□□□□ -1.03
CKS1YBR135W ILV3P39522 585 aaKnown RBP8.62□□□□□ -1.03
CKS1YBR135W GUA1P38625 525 aaKnown RBP8.61□□□□□ -1.03
CKS1YBR135W ORC6P38826 435 aa8.61□□□□□ -1.03
CKS1YBR135W SEC61P32915 480 aa8.57□□□□□ -1.04
CKS1YBR135W YNL035CP53962 389 aaKnown RBP8.57□□□□□ -1.04
CKS1YBR135W YEL023CP39992 682 aa8.56□□□□□ -1.04
CKS1YBR135W HGH1P48362 394 aaKnown RBP8.56□□□□□ -1.04
CKS1YBR135W RLF2Q12495 606 aa8.56□□□□□ -1.04
CKS1YBR135W HPC2Q01448 625 aa8.55□□□□□ -1.04
CKS1YBR135W DAN4P47179 1161 aa8.53□□□□□ -1.04
CKS1YBR135W SLI15P38283 698 aa8.52□□□□□ -1.05
CKS1YBR135W GAP1P19145 602 aaPredicted RBP8.5□□□□□ -1.05
CKS1YBR135W PTC4P38089 393 aa8.5□□□□□ -1.05
CKS1YBR135W RGR1P19263 1082 aa8.49□□□□□ -1.05
CKS1YBR135W TEA1P47988 759 aa8.49□□□□□ -1.05
CKS1YBR135W JIP4Q03361 876 aa8.48□□□□□ -1.05
CKS1YBR135W CLB5P30283 435 aa8.47□□□□□ -1.05
CKS1YBR135W MVP1P40959 511 aaKnown RBP8.47□□□□□ -1.05
CKS1YBR135W SSA2P10592 639 aaKnown RBP8.46□□□□□ -1.06
CKS1YBR135W RPP1BP10622 106 aaKnown RBP8.46□□□□□ -1.06
CKS1YBR135W TFG1P41895 735 aaPredicted RBP8.46□□□□□ -1.06
CKS1YBR135W CSN12P47130 423 aa8.46□□□□□ -1.06
CKS1YBR135W TFB3Q03290 321 aa8.46□□□□□ -1.06
CKS1YBR135W CSC1Q06538 782 aa8.46□□□□□ -1.06
CKS1YBR135W BCK2P33306 851 aa8.45□□□□□ -1.06
CKS1YBR135W CDC73Q06697 393 aa8.43□□□□□ -1.06
CKS1YBR135W BRL1P38770 471 aa8.42□□□□□ -1.06
CKS1YBR135W SAP30P38429 201 aa8.41□□□□□ -1.06
CKS1YBR135W TFB4Q12004 338 aa8.41□□□□□ -1.06
CKS1YBR135W KTR1P27810 393 aaKnown RBP8.4□□□□□ -1.06
CKS1YBR135W YPR109WQ06104 294 aa8.39□□□□□ -1.07
CKS1YBR135W CHL1P22516 861 aaPredicted RBP8.38□□□□□ -1.07
CKS1YBR135W PKC1P24583 1151 aa8.38□□□□□ -1.07
CKS1YBR135W NIS1P53939 407 aa8.38□□□□□ -1.07
CKS1YBR135W YDL129WQ07555 291 aa8.36□□□□□ -1.07
CKS1YBR135W HST2P53686 357 aa8.35□□□□□ -1.07
CKS1YBR135W FPK1P53739 893 aa8.35□□□□□ -1.07
CKS1YBR135W DPL1Q05567 589 aa8.35□□□□□ -1.07
CKS1YBR135W TYW1Q08960 810 aaKnown RBP8.35□□□□□ -1.07
CKS1YBR135W MID1P41821 548 aa8.34□□□□□ -1.07
CKS1YBR135W PEX21P50091 288 aa8.34□□□□□ -1.07
CKS1YBR135W PML39Q03760 334 aa8.34□□□□□ -1.07
CKS1YBR135W MPC54Q08550 464 aa8.34□□□□□ -1.07
CKS1YBR135W GLN1P32288 370 aaKnown RBP8.33□□□□□ -1.08
CKS1YBR135W YMR196WQ04336 1088 aa8.33□□□□□ -1.08
CKS1YBR135W PRE3P38624 215 aa8.32□□□□□ -1.08
CKS1YBR135W SIT4P20604 311 aa8.31□□□□□ -1.08
CKS1YBR135W TUM1Q08686 304 aaKnown RBP8.31□□□□□ -1.08
CKS1YBR135W MMP1Q12372 583 aa8.3□□□□□ -1.08
CKS1YBR135W ISU2Q12056 156 aa8.28□□□□□ -1.08
CKS1YBR135W BIM1P40013 344 aa8.27□□□□□ -1.09
CKS1YBR135W YJL007CP47080 104 aa8.27□□□□□ -1.09
CKS1YBR135W YRR1Q12172 810 aa8.27□□□□□ -1.09
CKS1YBR135W ESS1P22696 170 aa8.26□□□□□ -1.09
CKS1YBR135W SCJ1P25303 377 aa8.26□□□□□ -1.09
Retrieved 100 of 5,963 RNA–protein pairs in 62.6 ms