RNA–Protein interactions for RNA: YBR135W

CKS1, Transcript of Cyclin-dependent protein kinase regulatory subunit and adaptor, yeastyeast

Gene CKS1, Length 453 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CKS1YBR135W DRS1P32892 752 aaKnown RBP14.63□□□□□ -0.07
CKS1YBR135W MTC1P47018 478 aaKnown RBP14.28□□□□□ -0.12
CKS1YBR135W FAP1P53971 965 aa13.89□□□□□ -0.19
CKS1YBR135W PRY3P47033 881 aa13.09□□□□□ -0.31
CKS1YBR135W BFR2Q06631 534 aaKnown RBP12.8□□□□□ -0.36
CKS1YBR135W AAD16Q02895 342 aa12.57□□□□□ -0.4
CKS1YBR135W PRI1P10363 409 aa12.53□□□□□ -0.4
CKS1YBR135W DIP2Q12220 943 aaPredicted RBP12.35□□□□□ -0.43
CKS1YBR135W YCK3P39962 524 aa12.32□□□□□ -0.44
CKS1YBR135W AVT3P36062 692 aa12.3□□□□□ -0.44
CKS1YBR135W TFA1P36100 482 aa12.29□□□□□ -0.44
CKS1YBR135W HAA1Q12753 694 aaKnown RBP12.23□□□□□ -0.45
CKS1YBR135W ISW2Q08773 1120 aa11.98□□□□□ -0.49
CKS1YBR135W RPG1P38249 964 aaKnown RBP11.88□□□□□ -0.51
CKS1YBR135W TSR3Q12094 313 aaKnown RBP11.78□□□□□ -0.52
CKS1YBR135W RSE1Q04693 1361 aaKnown RBP11.57□□□□□ -0.56
CKS1YBR135W MRPL32P25348 183 aa11.33□□□□□ -0.6
CKS1YBR135W YGL015CP33199 130 aa11.15□□□□□ -0.62
CKS1YBR135W RPL17AP05740 184 aaKnown RBP11.12□□□□□ -0.63
CKS1YBR135W RPL17BP46990 184 aaKnown RBP11.12□□□□□ -0.63
CKS1YBR135W REB1P21538 810 aa10.93□□□□□ -0.66
CKS1YBR135W SPT21P35209 758 aa10.78□□□□□ -0.68
CKS1YBR135W RQC2Q12532 1038 aaKnown RBP10.72□□□□□ -0.69
CKS1YBR135W RIM101P33400 625 aa10.69□□□□□ -0.7
CKS1YBR135W BUD31P25337 157 aaPredicted RBP10.66□□□□□ -0.7
CKS1YBR135W CDC27P38042 758 aa10.58□□□□□ -0.72
CKS1YBR135W PTP3P40048 928 aa10.46□□□□□ -0.73
CKS1YBR135W UBP10P53874 792 aaPredicted RBP10.41□□□□□ -0.74
CKS1YBR135W OXP1P28273 1286 aa10.36□□□□□ -0.75
CKS1YBR135W MAP2P38174 421 aaKnown RBP10.36□□□□□ -0.75
CKS1YBR135W SSP1P38871 571 aa10.34□□□□□ -0.75
CKS1YBR135W YKR023WP36119 530 aaKnown RBP10.33□□□□□ -0.76
CKS1YBR135W DMA1P38823 416 aa10.22□□□□□ -0.77
CKS1YBR135W YAH1Q12184 172 aaKnown RBP10.2□□□□□ -0.78
CKS1YBR135W YIL055CP40523 627 aaKnown RBP10.17□□□□□ -0.78
CKS1YBR135W TFC8Q12308 588 aa10.13□□□□□ -0.79
CKS1YBR135W ARP8Q12386 881 aaKnown RBP RIP-Chip data10.13□□□□□ -0.79not detected
CKS1YBR135W YLR271WQ06152 274 aa10.12□□□□□ -0.79
CKS1YBR135W HOP09932 586 aa10.09□□□□□ -0.79
CKS1YBR135W DCD1P06773 312 aa10.08□□□□□ -0.8
CKS1YBR135W SIS1P25294 352 aaKnown RBP10.04□□□□□ -0.8
CKS1YBR135W RSM7P47150 247 aa10.04□□□□□ -0.8
CKS1YBR135W TIF4632P39936 914 aaKnown RBP9.99□□□□□ -0.81
CKS1YBR135W UBP9P39967 754 aa9.98□□□□□ -0.81
CKS1YBR135W TGL3P40308 642 aa9.98□□□□□ -0.81
CKS1YBR135W SCY1P53009 804 aa9.98□□□□□ -0.81
CKS1YBR135W MGA2P40578 1113 aa9.94□□□□□ -0.82
CKS1YBR135W SLX5P32828 619 aaKnown RBP9.92□□□□□ -0.82
CKS1YBR135W AI2P03876 854 aa9.84□□□□□ -0.83
CKS1YBR135W PSD2P53037 1138 aaKnown RBP9.84□□□□□ -0.83
CKS1YBR135W BCH2P36122 765 aa9.83□□□□□ -0.84
CKS1YBR135W CST9Q06032 482 aa9.83□□□□□ -0.84
CKS1YBR135W BBC1P47068 1157 aa9.74□□□□□ -0.85
CKS1YBR135W EPS1P40557 701 aa9.7□□□□□ -0.86
CKS1YBR135W SAS10Q12136 610 aaPredicted RBP9.62□□□□□ -0.87
CKS1YBR135W BDF1P35817 686 aa9.61□□□□□ -0.87
CKS1YBR135W MRM1P25270 412 aa9.55□□□□□ -0.88
CKS1YBR135W RAM2P29703 316 aa9.53□□□□□ -0.88
CKS1YBR135W RCR1P38212 213 aa9.46□□□□□ -0.9
CKS1YBR135W RTG3P38165 486 aa9.45□□□□□ -0.9
CKS1YBR135W LEO1P38439 464 aa9.45□□□□□ -0.9
CKS1YBR135W MST1P07236 462 aa9.44□□□□□ -0.9
CKS1YBR135W YBL029C-AQ3E756 94 aa9.43□□□□□ -0.9
CKS1YBR135W LEU3P08638 886 aa9.41□□□□□ -0.9
CKS1YBR135W SET1P38827 1080 aaKnown RBP9.37□□□□□ -0.91
CKS1YBR135W MAK11P20484 414 aaKnown RBP9.36□□□□□ -0.91
CKS1YBR135W YOR238WQ08634 303 aa9.35□□□□□ -0.91
CKS1YBR135W VPS29P38759 282 aa9.34□□□□□ -0.91
CKS1YBR135W YPR148CQ06523 435 aa9.32□□□□□ -0.92
CKS1YBR135W VNX1P42839 908 aa9.3□□□□□ -0.92
CKS1YBR135W TAF7Q05021 590 aa9.29□□□□□ -0.92
CKS1YBR135W IFH1P39520 1085 aa9.28□□□□□ -0.92
CKS1YBR135W NSR1P27476 414 aaKnown RBP RIP-Chip data9.24□□□□□ -0.93 RIP-Chip
CKS1YBR135W CKB1P43639 278 aa9.23□□□□□ -0.93
CKS1YBR135W YMR1P47147 688 aaKnown RBP RIP-Chip data9.23□□□□□ -0.93not detected
CKS1YBR135W VPS70P47161 811 aa9.23□□□□□ -0.93
CKS1YBR135W COQ8P27697 501 aa9.21□□□□□ -0.94
CKS1YBR135W SPP1Q03012 353 aa9.21□□□□□ -0.94
CKS1YBR135W STS1P38637 319 aa9.2□□□□□ -0.94
CKS1YBR135W NOP53Q12080 455 aaKnown RBP9.17□□□□□ -0.94
CKS1YBR135W DBP1P24784 617 aaKnown RBP9.15□□□□□ -0.94
CKS1YBR135W YAP5P40574 245 aa9.15□□□□□ -0.94
CKS1YBR135W WSC3Q12215 556 aa9.14□□□□□ -0.95
CKS1YBR135W SPB4P25808 606 aaPredicted RBP9.13□□□□□ -0.95
CKS1YBR135W AIR2Q12476 344 aaKnown RBP9.13□□□□□ -0.95
CKS1YBR135W EDS1P38073 919 aa9.12□□□□□ -0.95
CKS1YBR135W YFR006WP43590 535 aa9.12□□□□□ -0.95
CKS1YBR135W MIF2P35201 549 aa9.11□□□□□ -0.95
CKS1YBR135W RPN1P38764 993 aaKnown RBP9.11□□□□□ -0.95
CKS1YBR135W YJL171CP46992 396 aa9.09□□□□□ -0.95
CKS1YBR135W FKH1P40466 484 aa9.07□□□□□ -0.96
CKS1YBR135W DSF2P38213 736 aa9.06□□□□□ -0.96
CKS1YBR135W TIF11P38912 153 aaKnown RBP9.06□□□□□ -0.96
CKS1YBR135W PBS2P08018 668 aa9.03□□□□□ -0.96
CKS1YBR135W PTC3P34221 468 aaKnown RBP9.02□□□□□ -0.97
CKS1YBR135W PIB1Q06651 286 aa9□□□□□ -0.97
CKS1YBR135W REF2P42073 533 aaPredicted RBP8.99□□□□□ -0.97
CKS1YBR135W VMA1P17255 1071 aaKnown RBP8.98□□□□□ -0.97
CKS1YBR135W GTT3P39996 337 aa8.98□□□□□ -0.97
CKS1YBR135W MAM3Q12296 706 aa8.93□□□□□ -0.98
Retrieved 100 of 5,963 RNA–protein pairs in 11.7 ms