RNA–Protein interactions for RNA: ENST00000638076.1

CLN6-224, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 1 (best)

Gene CLN6, Length 2,323 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-224ENST00000638076 TIAM1Q13009 1591 aa32.26■■■□□ 2.75
CLN6-224ENST00000638076 CTTNBP2Q8WZ74 1663 aa32.26■■■□□ 2.75
CLN6-224ENST00000638076 TARBP1Q13395 1621 aaKnown RBP32.23■■■□□ 2.75
CLN6-224ENST00000638076 EFCAB5A4FU69 1503 aa32.22■■■□□ 2.75
CLN6-224ENST00000638076 FHOD3Q2V2M9 1422 aa32.21■■■□□ 2.75
CLN6-224ENST00000638076 PCF11O94913 1555 aaKnown RBP32.17■■■□□ 2.74
CLN6-224ENST00000638076 MRC2Q9UBG0 1479 aa32.16■■■□□ 2.74
CLN6-224ENST00000638076 CCNB3Q8WWL7 1395 aa32.15■■■□□ 2.74
CLN6-224ENST00000638076 LRRC9Q6ZRR7 1453 aa32.14■■■□□ 2.74
CLN6-224ENST00000638076 ATP1B4Q9UN42 357 aaPredicted RBP32.08■■■□□ 2.73
CLN6-224ENST00000638076 CFAP43Q8NDM7 1665 aa32.08■■■□□ 2.73
CLN6-224ENST00000638076 FYCO1Q9BQS8 1478 aa32.07■■■□□ 2.72
CLN6-224ENST00000638076 CASKIN1Q8WXD9 1431 aa32.05■■■□□ 2.72
CLN6-224ENST00000638076 AQRO60306 1485 aaKnown RBP eCLIP32.04■■■□□ 2.722e-7■■■■□ 23.4
CLN6-224ENST00000638076 FMN1Q68DA7 1419 aa32.01■■■□□ 2.71
CLN6-224ENST00000638076 PBRM1Q86U86 1689 aa32.01■■■□□ 2.71
CLN6-224ENST00000638076 SAMD9Q5K651 1589 aa31.99■■■□□ 2.71
CLN6-224ENST00000638076 PHLDB1Q86UU1 1377 aa31.97■■■□□ 2.71
CLN6-224ENST00000638076 DHX57Q6P158 1386 aaKnown RBP31.95■■■□□ 2.71
CLN6-224ENST00000638076 ITGAEP38570 1179 aa31.94■■■□□ 2.7
CLN6-224ENST00000638076 WDR62O43379 1518 aa31.93■■■□□ 2.7
CLN6-224ENST00000638076 SNAPC4Q5SXM2 1469 aa31.92■■■□□ 2.7
CLN6-224ENST00000638076 IFT140Q96RY7 1462 aa31.9■■■□□ 2.7
CLN6-224ENST00000638076 CLSPNQ9HAW4 1339 aa31.89■■■□□ 2.7
CLN6-224ENST00000638076 ADAMTS12P58397 1594 aa31.89■■■□□ 2.7
CLN6-224ENST00000638076 GRIN2BQ13224 1484 aa31.88■■■□□ 2.69
CLN6-224ENST00000638076 DIEXFQ68CQ4 756 aaKnown RBP31.84■■■□□ 2.69
CLN6-224ENST00000638076 ZNF608Q9ULD9 1512 aaPredicted RBP31.84■■■□□ 2.69
CLN6-224ENST00000638076 ZNF316A6NFI3 1004 aaPredicted RBP31.83■■■□□ 2.69
CLN6-224ENST00000638076 FAM50AQ14320 339 aaKnown RBP31.79■■■□□ 2.68
CLN6-224ENST00000638076 ERCC6Q03468 1493 aa31.79■■■□□ 2.68
CLN6-224ENST00000638076 IQGAP2Q13576 1575 aa31.76■■■□□ 2.67
CLN6-224ENST00000638076 RAB3GAP2Q9H2M9 1393 aa31.73■■■□□ 2.67
CLN6-224ENST00000638076 LRRIQ1Q96JM4 1722 aa31.73■■■□□ 2.67
CLN6-224ENST00000638076 MTUS2Q5JR59 1369 aa31.72■■■□□ 2.67
CLN6-224ENST00000638076 THOC2Q8NI27 1593 aaKnown RBP31.71■■■□□ 2.67
CLN6-224ENST00000638076 SETD5Q9C0A6 1442 aa31.68■■■□□ 2.66
CLN6-224ENST00000638076 EIF4G3O43432 1585 aaKnown RBP31.65■■■□□ 2.66
CLN6-224ENST00000638076 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.65■■■□□ 2.661e-10■■□□□ 12.6
CLN6-224ENST00000638076 FGD6Q6ZV73 1430 aa31.62■■■□□ 2.65
CLN6-224ENST00000638076 UGGT2Q9NYU1 1516 aa31.59■■■□□ 2.65
CLN6-224ENST00000638076 CCDC18Q5T9S5 1454 aa31.57■■■□□ 2.64
CLN6-224ENST00000638076 EHBP1L1Q8N3D4 1523 aa31.56■■■□□ 2.64
CLN6-224ENST00000638076 NCOA2Q15596 1464 aa31.56■■■□□ 2.64
CLN6-224ENST00000638076 KIAA0586Q9BVV6 1533 aa31.54■■■□□ 2.64
CLN6-224ENST00000638076 HECW1Q76N89 1606 aa31.54■■■□□ 2.64
CLN6-224ENST00000638076 GRIN2AQ12879 1464 aa31.54■■■□□ 2.64
CLN6-224ENST00000638076 SUPT6HQ7KZ85 1726 aaKnown RBP31.53■■■□□ 2.64
CLN6-224ENST00000638076 MAPKBP1O60336 1514 aa31.5■■■□□ 2.63
CLN6-224ENST00000638076 MAGI3Q5TCQ9 1506 aa31.5■■■□□ 2.63
CLN6-224ENST00000638076 MYOM3Q5VTT5 1437 aa31.5■■■□□ 2.63
CLN6-224ENST00000638076 MAGI1Q96QZ7 1491 aaPredicted RBP31.48■■■□□ 2.63
CLN6-224ENST00000638076 EPRSP07814 1512 aaKnown RBP31.47■■■□□ 2.63
CLN6-224ENST00000638076 DISP1Q96F81 1524 aa31.43■■■□□ 2.62
CLN6-224ENST00000638076 KIAA0556O60303 1618 aa31.43■■■□□ 2.62
CLN6-224ENST00000638076 ARHGEF11O15085 1522 aa31.43■■■□□ 2.62
CLN6-224ENST00000638076 CHMP7Q8WUX9 453 aaPredicted RBP31.41■■■□□ 2.62
CLN6-224ENST00000638076 CDK13Q14004 1512 aaKnown RBP31.4■■■□□ 2.62
CLN6-224ENST00000638076 SYNJ2O15056 1496 aa31.4■■■□□ 2.62
CLN6-224ENST00000638076 PTPRKQ15262 1439 aa31.37■■■□□ 2.61
CLN6-224ENST00000638076 ARID3CA6NKF2 412 aa31.35■■■□□ 2.61
CLN6-224ENST00000638076 PTPN23Q9H3S7 1636 aa31.35■■■□□ 2.61
CLN6-224ENST00000638076 CEP170Q5SW79 1584 aa31.33■■■□□ 2.61
CLN6-224ENST00000638076 FBLN2P98095 1184 aa31.32■■■□□ 2.6
CLN6-224ENST00000638076 HFM1A2PYH4 1435 aa31.3■■■□□ 2.6
CLN6-224ENST00000638076 TCOF1Q13428 1488 aaKnown RBP31.25■■■□□ 2.59
CLN6-224ENST00000638076 NUP153P49790 1475 aaKnown RBP31.24■■■□□ 2.59
CLN6-224ENST00000638076 RAPGEF6Q8TEU7 1601 aa31.24■■■□□ 2.59
CLN6-224ENST00000638076 SIN3AQ96ST3 1273 aa31.24■■■□□ 2.59
CLN6-224ENST00000638076 MIER1Q8N108 512 aa31.23■■■□□ 2.59
CLN6-224ENST00000638076 NUP160Q12769 1436 aa31.22■■■□□ 2.59
CLN6-224ENST00000638076 NAIPQ13075 1403 aa31.21■■■□□ 2.59
CLN6-224ENST00000638076 NEUROD1Q13562 356 aa31.2■■■□□ 2.58
CLN6-224ENST00000638076 MIA2Q96PC5 1412 aa31.19■■■□□ 2.58
CLN6-224ENST00000638076 JPH4Q96JJ6 628 aa31.15■■■□□ 2.58
CLN6-224ENST00000638076 UACAQ9BZF9 1416 aa31.15■■■□□ 2.58
CLN6-224ENST00000638076 CARMIL2Q6F5E8 1435 aa31.13■■■□□ 2.57
CLN6-224ENST00000638076 ACIN1Q9UKV3 1341 aaKnown RBP31.12■■■□□ 2.57
CLN6-224ENST00000638076 CDK11AQ9UQ88 783 aaPredicted RBP31.11■■■□□ 2.57
CLN6-224ENST00000638076 CENPBP07199 599 aaPredicted RBP31.1■■■□□ 2.57
CLN6-224ENST00000638076 CHIC2Q9UKJ5 165 aa31.1■■■□□ 2.57
CLN6-224ENST00000638076 TIMELESSQ9UNS1 1208 aa31.1■■■□□ 2.57
CLN6-224ENST00000638076 SCAF1Q9H7N4 1312 aaKnown RBP31.1■■■□□ 2.57
CLN6-224ENST00000638076 PLB1Q6P1J6 1458 aa31.1■■■□□ 2.57
CLN6-224ENST00000638076 RRP7BPQ9NSQ0 103 aa31.08■■■□□ 2.57
CLN6-224ENST00000638076 AKNAQ7Z591 1439 aa31.02■■■□□ 2.56
CLN6-224ENST00000638076 GCC2Q8IWJ2 1684 aa31.01■■■□□ 2.55
CLN6-224ENST00000638076 PRG4Q92954 1404 aaPredicted RBP31■■■□□ 2.55
CLN6-224ENST00000638076 TROQ12816 1431 aaPredicted RBP31■■■□□ 2.55
CLN6-224ENST00000638076 YTHDC1Q96MU7 727 aaKnown RBP30.95■■■□□ 2.55
CLN6-224ENST00000638076 PPP1R15AO75807 674 aaPredicted RBP30.95■■■□□ 2.54
CLN6-224ENST00000638076 DAPK1P53355 1430 aa30.94■■■□□ 2.54
CLN6-224ENST00000638076 ZNF644Q9H582 1327 aaPredicted RBP30.93■■■□□ 2.54
CLN6-224ENST00000638076 TONSLQ96HA7 1378 aa30.91■■■□□ 2.54
CLN6-224ENST00000638076 KDM6BO15054 1643 aa30.91■■■□□ 2.54
CLN6-224ENST00000638076 DNMT1P26358 1616 aaKnown RBP30.9■■■□□ 2.54
CLN6-224ENST00000638076 ABCC5O15440 1437 aa30.89■■■□□ 2.54
CLN6-224ENST00000638076 ABCA8O94911 1581 aa30.88■■■□□ 2.53
CLN6-224ENST00000638076 TRIM52Q96A61 297 aa30.87■■■□□ 2.53
CLN6-224ENST00000638076 ROCK1Q13464 1354 aa30.87■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms