RNA–Protein interactions for RNA: ENST00000629912.1

NEK3-211, Transcript of NIMA related kinase 3, humanhuman

TSL 5 BASIC

Gene NEK3, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-211ENST00000629912 FHAD1B1AJZ9 1412 aa8.46□□□□□ -1.05
NEK3-211ENST00000629912 TTBK1Q5TCY1 1321 aaPredicted RBP8.46□□□□□ -1.06
NEK3-211ENST00000629912 AQRO60306 1485 aaKnown RBP eCLIP8.45□□□□□ -1.06
NEK3-211ENST00000629912 GRIN2BQ13224 1484 aa8.45□□□□□ -1.06
NEK3-211ENST00000629912 KANK4Q5T7N3 995 aaPredicted RBP8.45□□□□□ -1.06
NEK3-211ENST00000629912 ERCC6Q03468 1493 aa8.44□□□□□ -1.06
NEK3-211ENST00000629912 THOC2Q8NI27 1593 aaKnown RBP8.43□□□□□ -1.06
NEK3-211ENST00000629912 CASKIN1Q8WXD9 1431 aa8.42□□□□□ -1.06
NEK3-211ENST00000629912 SAMD9Q5K651 1589 aa8.42□□□□□ -1.06
NEK3-211ENST00000629912 ADAMTS12P58397 1594 aa8.41□□□□□ -1.06
NEK3-211ENST00000629912 TIAM1Q13009 1591 aa8.41□□□□□ -1.06
NEK3-211ENST00000629912 FMN1Q68DA7 1419 aa8.41□□□□□ -1.06
NEK3-211ENST00000629912 RRBP1Q9P2E9 1410 aaKnown RBP8.41□□□□□ -1.06
NEK3-211ENST00000629912 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.41□□□□□ -1.06
NEK3-211ENST00000629912 CCER1Q8TC90 406 aaPredicted RBP8.41□□□□□ -1.06
NEK3-211ENST00000629912 SENP3Q9H4L4 574 aaPredicted RBP8.41□□□□□ -1.06
NEK3-211ENST00000629912 ZNF608Q9ULD9 1512 aaPredicted RBP8.4□□□□□ -1.06
NEK3-211ENST00000629912 FYCO1Q9BQS8 1478 aa8.4□□□□□ -1.06
NEK3-211ENST00000629912 P3H3Q8IVL6 736 aa8.4□□□□□ -1.06
NEK3-211ENST00000629912 LRRC9Q6ZRR7 1453 aa8.39□□□□□ -1.07
NEK3-211ENST00000629912 FHOD3Q2V2M9 1422 aa8.39□□□□□ -1.07
NEK3-211ENST00000629912 CFAP43Q8NDM7 1665 aa8.38□□□□□ -1.07
NEK3-211ENST00000629912 HNRNPUL2Q1KMD3 747 aaKnown RBP8.38□□□□□ -1.07
NEK3-211ENST00000629912 PCF11O94913 1555 aaKnown RBP8.37□□□□□ -1.07
NEK3-211ENST00000629912 MAGI1Q96QZ7 1491 aaPredicted RBP8.37□□□□□ -1.07
NEK3-211ENST00000629912 EIF4G3O43432 1585 aaKnown RBP8.36□□□□□ -1.07
NEK3-211ENST00000629912 IQGAP2Q13576 1575 aa8.36□□□□□ -1.07
NEK3-211ENST00000629912 KIAA0586Q9BVV6 1533 aa8.36□□□□□ -1.07
NEK3-211ENST00000629912 UGGT2Q9NYU1 1516 aa8.36□□□□□ -1.07
NEK3-211ENST00000629912 CCNB3Q8WWL7 1395 aa8.35□□□□□ -1.07
NEK3-211ENST00000629912 SNAPC4Q5SXM2 1469 aa8.35□□□□□ -1.07
NEK3-211ENST00000629912 GRIN2AQ12879 1464 aa8.34□□□□□ -1.07
NEK3-211ENST00000629912 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.34□□□□□ -1.07
NEK3-211ENST00000629912 SYNJ2O15056 1496 aa8.33□□□□□ -1.08
NEK3-211ENST00000629912 ATP1B4Q9UN42 357 aaPredicted RBP8.33□□□□□ -1.08
NEK3-211ENST00000629912 CHMP7Q8WUX9 453 aaPredicted RBP8.32□□□□□ -1.08
NEK3-211ENST00000629912 CLSPNQ9HAW4 1339 aa8.31□□□□□ -1.08
NEK3-211ENST00000629912 PHLDB1Q86UU1 1377 aa8.31□□□□□ -1.08
NEK3-211ENST00000629912 LRRIQ1Q96JM4 1722 aa8.31□□□□□ -1.08
NEK3-211ENST00000629912 CCDC18Q5T9S5 1454 aa8.3□□□□□ -1.08
NEK3-211ENST00000629912 NUP160Q12769 1436 aa8.29□□□□□ -1.08
NEK3-211ENST00000629912 DISP1Q96F81 1524 aa8.29□□□□□ -1.08
NEK3-211ENST00000629912 MTUS2Q5JR59 1369 aa8.28□□□□□ -1.08
NEK3-211ENST00000629912 HECW1Q76N89 1606 aa8.28□□□□□ -1.08
NEK3-211ENST00000629912 CEP170Q5SW79 1584 aa8.27□□□□□ -1.09
NEK3-211ENST00000629912 JPH4Q96JJ6 628 aa8.27□□□□□ -1.09
NEK3-211ENST00000629912 KIAA0556O60303 1618 aa8.27□□□□□ -1.09
NEK3-211ENST00000629912 EPRSP07814 1512 aaKnown RBP8.26□□□□□ -1.09
NEK3-211ENST00000629912 EHBP1L1Q8N3D4 1523 aa8.26□□□□□ -1.09
NEK3-211ENST00000629912 SUPT6HQ7KZ85 1726 aaKnown RBP8.26□□□□□ -1.09
NEK3-211ENST00000629912 DHX57Q6P158 1386 aaKnown RBP8.25□□□□□ -1.09
NEK3-211ENST00000629912 ARHGEF11O15085 1522 aa8.25□□□□□ -1.09
NEK3-211ENST00000629912 PHF23Q9BUL5 403 aaPredicted RBP8.25□□□□□ -1.09
NEK3-211ENST00000629912 CARMIL2Q6F5E8 1435 aa8.25□□□□□ -1.09
NEK3-211ENST00000629912 FGD6Q6ZV73 1430 aa8.25□□□□□ -1.09
NEK3-211ENST00000629912 SETD5Q9C0A6 1442 aa8.25□□□□□ -1.09
NEK3-211ENST00000629912 NCOA2Q15596 1464 aa8.25□□□□□ -1.09
NEK3-211ENST00000629912 FBLN2P98095 1184 aa8.24□□□□□ -1.09
NEK3-211ENST00000629912 FAM50AQ14320 339 aaKnown RBP8.24□□□□□ -1.09
NEK3-211ENST00000629912 MYOM3Q5VTT5 1437 aa8.23□□□□□ -1.09
NEK3-211ENST00000629912 MAGI3Q5TCQ9 1506 aa8.23□□□□□ -1.09
NEK3-211ENST00000629912 RAPGEF6Q8TEU7 1601 aa8.22□□□□□ -1.09
NEK3-211ENST00000629912 ITGAEP38570 1179 aa8.22□□□□□ -1.09
NEK3-211ENST00000629912 CDK11AQ9UQ88 783 aaPredicted RBP8.22□□□□□ -1.09
NEK3-211ENST00000629912 RAB3GAP2Q9H2M9 1393 aa8.22□□□□□ -1.09
NEK3-211ENST00000629912 MIA2Q96PC5 1412 aa8.2□□□□□ -1.1
NEK3-211ENST00000629912 NUP153P49790 1475 aaKnown RBP8.2□□□□□ -1.1
NEK3-211ENST00000629912 TCOF1Q13428 1488 aaKnown RBP8.2□□□□□ -1.1
NEK3-211ENST00000629912 CDK13Q14004 1512 aaKnown RBP8.19□□□□□ -1.1
NEK3-211ENST00000629912 PTPN23Q9H3S7 1636 aa8.18□□□□□ -1.1
NEK3-211ENST00000629912 ZNF316A6NFI3 1004 aaPredicted RBP8.18□□□□□ -1.1
NEK3-211ENST00000629912 ABCA8O94911 1581 aa8.18□□□□□ -1.1
NEK3-211ENST00000629912 CHD1O14646 1710 aa8.17□□□□□ -1.1
NEK3-211ENST00000629912 ACIN1Q9UKV3 1341 aaKnown RBP8.17□□□□□ -1.1
NEK3-211ENST00000629912 PTPRKQ15262 1439 aa8.17□□□□□ -1.1
NEK3-211ENST00000629912 HFM1A2PYH4 1435 aa8.16□□□□□ -1.1
NEK3-211ENST00000629912 TROQ12816 1431 aaPredicted RBP8.16□□□□□ -1.1
NEK3-211ENST00000629912 SHROOM2Q13796 1616 aa8.16□□□□□ -1.1
NEK3-211ENST00000629912 PRG4Q92954 1404 aaPredicted RBP8.16□□□□□ -1.1
NEK3-211ENST00000629912 TIMELESSQ9UNS1 1208 aa8.16□□□□□ -1.1
NEK3-211ENST00000629912 PLB1Q6P1J6 1458 aa8.15□□□□□ -1.1
NEK3-211ENST00000629912 ADCY10Q96PN6 1610 aa8.14□□□□□ -1.11
NEK3-211ENST00000629912 PTPRGP23470 1445 aa8.14□□□□□ -1.11
NEK3-211ENST00000629912 NAIPQ13075 1403 aa8.14□□□□□ -1.11
NEK3-211ENST00000629912 AKNAQ7Z591 1439 aa8.14□□□□□ -1.11
NEK3-211ENST00000629912 PLEKHD1A6NEE1 506 aa8.14□□□□□ -1.11
NEK3-211ENST00000629912 ATP10BO94823 1461 aa8.13□□□□□ -1.11
NEK3-211ENST00000629912 MAPKBP1O60336 1514 aa8.13□□□□□ -1.11
NEK3-211ENST00000629912 UACAQ9BZF9 1416 aa8.12□□□□□ -1.11
NEK3-211ENST00000629912 ROCK1Q13464 1354 aa8.11□□□□□ -1.11
NEK3-211ENST00000629912 ARID3CA6NKF2 412 aa8.11□□□□□ -1.11
NEK3-211ENST00000629912 DIEXFQ68CQ4 756 aaKnown RBP8.11□□□□□ -1.11
NEK3-211ENST00000629912 GPATCH8Q9UKJ3 1502 aaKnown RBP8.11□□□□□ -1.11
NEK3-211ENST00000629912 ITSN2Q9NZM3 1697 aa8.1□□□□□ -1.11
NEK3-211ENST00000629912 CLASP1Q7Z460 1538 aa8.09□□□□□ -1.11
NEK3-211ENST00000629912 GCC2Q8IWJ2 1684 aa8.09□□□□□ -1.11
NEK3-211ENST00000629912 ABCC10Q5T3U5 1492 aa8.09□□□□□ -1.11
NEK3-211ENST00000629912 CFDP1Q9UEE9 299 aaPredicted RBP8.09□□□□□ -1.11
NEK3-211ENST00000629912 DNMT1P26358 1616 aaKnown RBP8.09□□□□□ -1.11
NEK3-211ENST00000629912 ABCC5O15440 1437 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms