RNA–Protein interactions for RNA: ENST00000629667.2

PDLIM3-213, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 1,016 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-213ENST00000629667 RUSC2Q8N2Y8 1516 aa27.8■■■□□ 2.04
PDLIM3-213ENST00000629667 NPM1P06748 294 aaKnown RBP eCLIP27.73■■■□□ 2.03
PDLIM3-213ENST00000629667 FAM69CQ0P6D2 419 aa27.67■■■□□ 2.02
PDLIM3-213ENST00000629667 ABCC10Q5T3U5 1492 aa27.66■■■□□ 2.02
PDLIM3-213ENST00000629667 MAPKBP1O60336 1514 aa27.64■■■□□ 2.02
PDLIM3-213ENST00000629667 ADCY10Q96PN6 1610 aa27.63■■■□□ 2.01
PDLIM3-213ENST00000629667 KIAA0586Q9BVV6 1533 aa27.62■■■□□ 2.01
PDLIM3-213ENST00000629667 CUL7Q14999 1698 aa27.6■■■□□ 2.01
PDLIM3-213ENST00000629667 DIP2BQ9P265 1576 aa27.6■■■□□ 2.01
PDLIM3-213ENST00000629667 KIF27Q86VH2 1401 aa27.58■■■□□ 2.01
PDLIM3-213ENST00000629667 IGF1RP08069 1367 aa27.58■■■□□ 2.01
PDLIM3-213ENST00000629667 TSPOAP1O95153 1857 aa27.49■■□□□ 1.99
PDLIM3-213ENST00000629667 KDM6BO15054 1643 aa27.46■■□□□ 1.99
PDLIM3-213ENST00000629667 PTPRGP23470 1445 aa27.43■■□□□ 1.98
PDLIM3-213ENST00000629667 TTBK1Q5TCY1 1321 aaPredicted RBP27.41■■□□□ 1.98
PDLIM3-213ENST00000629667 CARMIL1Q5VZK9 1371 aa27.41■■□□□ 1.98
PDLIM3-213ENST00000629667 CARMIL2Q6F5E8 1435 aa27.38■■□□□ 1.97
PDLIM3-213ENST00000629667 TNIKQ9UKE5 1360 aa27.35■■□□□ 1.97
PDLIM3-213ENST00000629667 IQGAP2Q13576 1575 aa27.33■■□□□ 1.97
PDLIM3-213ENST00000629667 ABCC2Q92887 1545 aa27.31■■□□□ 1.96
PDLIM3-213ENST00000629667 KDM4FA0A1W2PPD8 638 aa27.28■■□□□ 1.96
PDLIM3-213ENST00000629667 ASXL2Q76L83 1435 aa27.26■■□□□ 1.95
PDLIM3-213ENST00000629667 PLB1Q6P1J6 1458 aa27.25■■□□□ 1.95
PDLIM3-213ENST00000629667 UHRF1BP1LA0JNW5 1464 aa27.22■■□□□ 1.95
PDLIM3-213ENST00000629667 GLI2P10070 1586 aa27.22■■□□□ 1.95
PDLIM3-213ENST00000629667 UACAQ9BZF9 1416 aa27.21■■□□□ 1.95
PDLIM3-213ENST00000629667 PPRC1Q5VV67 1664 aaKnown RBP27.2■■□□□ 1.94
PDLIM3-213ENST00000629667 DISP1Q96F81 1524 aa27.19■■□□□ 1.94
PDLIM3-213ENST00000629667 RAPGEF2Q9Y4G8 1499 aa27.13■■□□□ 1.93
PDLIM3-213ENST00000629667 UGGT2Q9NYU1 1516 aa27.12■■□□□ 1.93
PDLIM3-213ENST00000629667 KDM5BQ9UGL1 1544 aa27.11■■□□□ 1.93
PDLIM3-213ENST00000629667 EPRSP07814 1512 aaKnown RBP27.09■■□□□ 1.93
PDLIM3-213ENST00000629667 ZCCHC11Q5TAX3 1644 aaKnown RBP27.08■■□□□ 1.93
PDLIM3-213ENST00000629667 KIAA0556O60303 1618 aa27.08■■□□□ 1.93
PDLIM3-213ENST00000629667 MAP3K4Q9Y6R4 1608 aa27.08■■□□□ 1.93
PDLIM3-213ENST00000629667 TEX14Q8IWB6 1497 aa27.03■■□□□ 1.92
PDLIM3-213ENST00000629667 ADGRL1O94910 1474 aa27.01■■□□□ 1.91
PDLIM3-213ENST00000629667 COL17A1Q9UMD9 1497 aaPredicted RBP27■■□□□ 1.91
PDLIM3-213ENST00000629667 CTTNBP2Q8WZ74 1663 aa26.98■■□□□ 1.91
PDLIM3-213ENST00000629667 WDR7Q9Y4E6 1490 aa26.94■■□□□ 1.9
PDLIM3-213ENST00000629667 GOLGA3Q08378 1498 aa26.9■■□□□ 1.9
PDLIM3-213ENST00000629667 CFAP43Q8NDM7 1665 aa26.85■■□□□ 1.89
PDLIM3-213ENST00000629667 ABCA8O94911 1581 aa26.84■■□□□ 1.89
PDLIM3-213ENST00000629667 KCNH8Q96L42 1107 aa26.83■■□□□ 1.89
PDLIM3-213ENST00000629667 CD109Q6YHK3 1445 aa26.82■■□□□ 1.88
PDLIM3-213ENST00000629667 MAGI3Q5TCQ9 1506 aa26.8■■□□□ 1.88
PDLIM3-213ENST00000629667 ILDR1Q86SU0 546 aaPredicted RBP26.78■■□□□ 1.88
PDLIM3-213ENST00000629667 PRXQ9BXM0 1461 aa26.75■■□□□ 1.87
PDLIM3-213ENST00000629667 HECW2Q9P2P5 1572 aa26.75■■□□□ 1.87
PDLIM3-213ENST00000629667 FAM9AQ8IZU1 332 aaPredicted RBP26.73■■□□□ 1.87
PDLIM3-213ENST00000629667 ARID3CA6NKF2 412 aa26.65■■□□□ 1.86
PDLIM3-213ENST00000629667 P3H3Q8IVL6 736 aa26.64■■□□□ 1.86
PDLIM3-213ENST00000629667 KIF21BO75037 1637 aa26.64■■□□□ 1.85
PDLIM3-213ENST00000629667 ATP10BO94823 1461 aa26.61■■□□□ 1.85
PDLIM3-213ENST00000629667 ARAP3Q8WWN8 1544 aa26.6■■□□□ 1.85
PDLIM3-213ENST00000629667 ABCA9Q8IUA7 1624 aa26.56■■□□□ 1.84
PDLIM3-213ENST00000629667 SAMD9Q5K651 1589 aa26.53■■□□□ 1.84
PDLIM3-213ENST00000629667 PHLDB1Q86UU1 1377 aa26.52■■□□□ 1.84
PDLIM3-213ENST00000629667 RAPGEF6Q8TEU7 1601 aa26.52■■□□□ 1.84
PDLIM3-213ENST00000629667 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.5■■□□□ 1.83
PDLIM3-213ENST00000629667 HNRNPUL2Q1KMD3 747 aaKnown RBP26.5■■□□□ 1.83
PDLIM3-213ENST00000629667 CSRNP3Q8WYN3 585 aa26.5■■□□□ 1.83
PDLIM3-213ENST00000629667 NEO1Q92859 1461 aa26.45■■□□□ 1.82
PDLIM3-213ENST00000629667 RAPGEF3O95398 923 aa26.45■■□□□ 1.82
PDLIM3-213ENST00000629667 ADAMTSL3P82987 1691 aa26.42■■□□□ 1.82
PDLIM3-213ENST00000629667 PTPRMP28827 1452 aa26.39■■□□□ 1.82
PDLIM3-213ENST00000629667 RANGAP1P46060 587 aaPredicted RBP26.39■■□□□ 1.82
PDLIM3-213ENST00000629667 NUP153P49790 1475 aaKnown RBP26.38■■□□□ 1.81
PDLIM3-213ENST00000629667 FRMPD1Q5SYB0 1578 aa26.36■■□□□ 1.81
PDLIM3-213ENST00000629667 BCORL1Q5H9F3 1711 aa26.35■■□□□ 1.81
PDLIM3-213ENST00000629667 ARID4BQ4LE39 1312 aaPredicted RBP26.35■■□□□ 1.81
PDLIM3-213ENST00000629667 FHOD3Q2V2M9 1422 aa26.34■■□□□ 1.81
PDLIM3-213ENST00000629667 EEA1Q15075 1411 aa26.32■■□□□ 1.8
PDLIM3-213ENST00000629667 PLEKHD1A6NEE1 506 aa26.32■■□□□ 1.8
PDLIM3-213ENST00000629667 MADDQ8WXG6 1647 aa26.3■■□□□ 1.8
PDLIM3-213ENST00000629667 DENND4BO75064 1496 aaPredicted RBP26.27■■□□□ 1.8
PDLIM3-213ENST00000629667 RICTORQ6R327 1708 aa26.27■■□□□ 1.8
PDLIM3-213ENST00000629667 CFAP74Q9C0B2 1584 aa26.26■■□□□ 1.79
PDLIM3-213ENST00000629667 ARHGEF40Q8TER5 1519 aa26.25■■□□□ 1.79
PDLIM3-213ENST00000629667 AKNAQ7Z591 1439 aa26.24■■□□□ 1.79
PDLIM3-213ENST00000629667 FANCAO15360 1455 aa26.23■■□□□ 1.79
PDLIM3-213ENST00000629667 FBXO41Q8TF61 875 aa26.23■■□□□ 1.79
PDLIM3-213ENST00000629667 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.22■■□□□ 1.79
PDLIM3-213ENST00000629667 RIMS1Q86UR5 1692 aaKnown RBP26.22■■□□□ 1.79
PDLIM3-213ENST00000629667 PCF11O94913 1555 aaKnown RBP26.21■■□□□ 1.79
PDLIM3-213ENST00000629667 EFCAB5A4FU69 1503 aa26.21■■□□□ 1.79
PDLIM3-213ENST00000629667 TTC37Q6PGP7 1564 aa26.18■■□□□ 1.78
PDLIM3-213ENST00000629667 LMTK3Q96Q04 1460 aa26.17■■□□□ 1.78
PDLIM3-213ENST00000629667 POGZQ7Z3K3 1410 aa26.14■■□□□ 1.78
PDLIM3-213ENST00000629667 ZMYM4Q5VZL5 1548 aa26.14■■□□□ 1.78
PDLIM3-213ENST00000629667 ZFYVE16Q7Z3T8 1539 aa26.12■■□□□ 1.77
PDLIM3-213ENST00000629667 CDK13Q14004 1512 aaKnown RBP26.11■■□□□ 1.77
PDLIM3-213ENST00000629667 PLPPR3Q6T4P5 718 aa26.1■■□□□ 1.77
PDLIM3-213ENST00000629667 YEATS2Q9ULM3 1422 aa26.09■■□□□ 1.77
PDLIM3-213ENST00000629667 MAGI2Q86UL8 1455 aa26.09■■□□□ 1.77
PDLIM3-213ENST00000629667 SIGLEC1Q9BZZ2 1709 aa26.08■■□□□ 1.76
PDLIM3-213ENST00000629667 HECW1Q76N89 1606 aa26.06■■□□□ 1.76
PDLIM3-213ENST00000629667 PLCH2O75038 1416 aa26.05■■□□□ 1.76
PDLIM3-213ENST00000629667 MLECQ14165 292 aa26.04■■□□□ 1.76
PDLIM3-213ENST00000629667 ATP1B4Q9UN42 357 aaPredicted RBP26.04■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms