RNA–Protein interactions for RNA: ENST00000629667.2

PDLIM3-213, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 1,016 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-213ENST00000629667 NISCHQ9Y2I1 1504 aa39.56■■■■□ 3.92
PDLIM3-213ENST00000629667 ABCC9O60706 1549 aa35.91■■■■□ 3.34
PDLIM3-213ENST00000629667 CCDC180Q9P1Z9 1646 aa35.65■■■■□ 3.3
PDLIM3-213ENST00000629667 RB1CC1Q8TDY2 1594 aa34.07■■■■□ 3.05
PDLIM3-213ENST00000629667 DNAJC5BQ9UF47 199 aa33.89■■■■□ 3.02
PDLIM3-213ENST00000629667 NACADO15069 1562 aa33.77■■■■□ 3
PDLIM3-213ENST00000629667 DCAF8L2P0C7V8 631 aa33.58■■■□□ 2.97
PDLIM3-213ENST00000629667 PABPN1Q86U42 306 aaKnown RBP eCLIP33.38■■■□□ 2.93
PDLIM3-213ENST00000629667 UNC13AQ9UPW8 1703 aa33.33■■■□□ 2.93
PDLIM3-213ENST00000629667 MYO15BQ96JP2 1530 aa33.18■■■□□ 2.9
PDLIM3-213ENST00000629667 BICRAQ9NZM4 1560 aa33.05■■■□□ 2.88
PDLIM3-213ENST00000629667 ZCCHC6Q5VYS8 1495 aaKnown RBP32.72■■■□□ 2.83
PDLIM3-213ENST00000629667 DCAF1Q9Y4B6 1507 aa32.65■■■□□ 2.82
PDLIM3-213ENST00000629667 SHROOM4Q9ULL8 1493 aa32.58■■■□□ 2.81
PDLIM3-213ENST00000629667 SCRIBQ14160 1630 aa32.47■■■□□ 2.79
PDLIM3-213ENST00000629667 CC2D2AQ9P2K1 1620 aa32.44■■■□□ 2.78
PDLIM3-213ENST00000629667 CECR2Q9BXF3 1484 aa32.37■■■□□ 2.77
PDLIM3-213ENST00000629667 EIF4G1Q04637 1599 aaKnown RBP32.29■■■□□ 2.76
PDLIM3-213ENST00000629667 DNAJC5Q9H3Z4 198 aa31.35■■■□□ 2.61
PDLIM3-213ENST00000629667 NCAPD3P42695 1498 aa31.14■■■□□ 2.58
PDLIM3-213ENST00000629667 CUX2O14529 1486 aa31.06■■■□□ 2.56
PDLIM3-213ENST00000629667 ERCC6Q03468 1493 aa31.05■■■□□ 2.56
PDLIM3-213ENST00000629667 ATAD2BQ9ULI0 1458 aa31.01■■■□□ 2.56
PDLIM3-213ENST00000629667 SMARCA2P51531 1590 aa30.94■■■□□ 2.54
PDLIM3-213ENST00000629667 SMARCA4P51532 1647 aa30.94■■■□□ 2.54
PDLIM3-213ENST00000629667 HMGXB3Q12766 1538 aa30.9■■■□□ 2.54
PDLIM3-213ENST00000629667 NESP48681 1621 aa30.76■■■□□ 2.51
PDLIM3-213ENST00000629667 BAZ1AQ9NRL2 1556 aaPredicted RBP30.75■■■□□ 2.51
PDLIM3-213ENST00000629667 BAZ1BQ9UIG0 1483 aaKnown RBP30.73■■■□□ 2.51
PDLIM3-213ENST00000629667 PEG3Q9GZU2 1588 aa30.62■■■□□ 2.49
PDLIM3-213ENST00000629667 LAMC3Q9Y6N6 1575 aa30.53■■■□□ 2.48
PDLIM3-213ENST00000629667 THOC2Q8NI27 1593 aaKnown RBP30.51■■■□□ 2.47
PDLIM3-213ENST00000629667 MROH2BQ7Z745 1585 aa30.48■■■□□ 2.47
PDLIM3-213ENST00000629667 KIF21AQ7Z4S6 1674 aa30.39■■■□□ 2.46
PDLIM3-213ENST00000629667 PDS5BQ9NTI5 1447 aa30.35■■■□□ 2.45
PDLIM3-213ENST00000629667 CADPSQ9ULU8 1353 aa30.19■■■□□ 2.42
PDLIM3-213ENST00000629667 WIZO95785 1651 aa30.13■■■□□ 2.41
PDLIM3-213ENST00000629667 MRC2Q9UBG0 1479 aa30.1■■■□□ 2.41
PDLIM3-213ENST00000629667 WDR62O43379 1518 aa30.03■■■□□ 2.4
PDLIM3-213ENST00000629667 CEP164Q9UPV0 1460 aa29.93■■■□□ 2.38
PDLIM3-213ENST00000629667 TRIM41Q8WV44 630 aa29.91■■■□□ 2.38
PDLIM3-213ENST00000629667 FANCD2Q9BXW9 1451 aa29.87■■■□□ 2.37
PDLIM3-213ENST00000629667 CFTRP13569 1480 aa29.79■■■□□ 2.36
PDLIM3-213ENST00000629667 RSF1Q96T23 1441 aaPredicted RBP29.73■■■□□ 2.35
PDLIM3-213ENST00000629667 TOP2AP11388 1531 aaKnown RBP29.71■■■□□ 2.35
PDLIM3-213ENST00000629667 URB2Q14146 1524 aaKnown RBP29.62■■■□□ 2.33
PDLIM3-213ENST00000629667 OSCARQ8IYS5 282 aa29.62■■■□□ 2.33
PDLIM3-213ENST00000629667 PRDM2Q13029 1718 aa29.54■■■□□ 2.32
PDLIM3-213ENST00000629667 CCDC88BA6NC98 1476 aa29.36■■■□□ 2.29
PDLIM3-213ENST00000629667 IFT140Q96RY7 1462 aa29.34■■■□□ 2.29
PDLIM3-213ENST00000629667 ZNF608Q9ULD9 1512 aaPredicted RBP29.3■■■□□ 2.28
PDLIM3-213ENST00000629667 TOPBP1Q92547 1522 aa29.26■■■□□ 2.27
PDLIM3-213ENST00000629667 RIMBP3CA6NJZ7 1639 aa29.26■■■□□ 2.27
PDLIM3-213ENST00000629667 RIMBP3BA6NNM3 1639 aa29.26■■■□□ 2.27
PDLIM3-213ENST00000629667 RIMBP3Q9UFD9 1639 aa29.26■■■□□ 2.27
PDLIM3-213ENST00000629667 ABCC8Q09428 1581 aa29.21■■■□□ 2.27
PDLIM3-213ENST00000629667 EIF4G3O43432 1585 aaKnown RBP29.16■■■□□ 2.26
PDLIM3-213ENST00000629667 DNMBPQ6XZF7 1577 aa29.14■■■□□ 2.26
PDLIM3-213ENST00000629667 ARHGEF11O15085 1522 aa29.12■■■□□ 2.25
PDLIM3-213ENST00000629667 TARBP1Q13395 1621 aaKnown RBP29.03■■■□□ 2.24
PDLIM3-213ENST00000629667 CHD1O14646 1710 aa29.03■■■□□ 2.24
PDLIM3-213ENST00000629667 AQRO60306 1485 aaKnown RBP eCLIP29.01■■■□□ 2.23
PDLIM3-213ENST00000629667 CYB5RLQ6IPT4 315 aa28.95■■■□□ 2.22
PDLIM3-213ENST00000629667 POLA1P09884 1462 aaPredicted RBP28.95■■■□□ 2.22
PDLIM3-213ENST00000629667 FBLN2P98095 1184 aa28.92■■■□□ 2.22
PDLIM3-213ENST00000629667 RAD54L2Q9Y4B4 1467 aa28.85■■■□□ 2.21
PDLIM3-213ENST00000629667 SOGA1O94964 1423 aa28.82■■■□□ 2.2
PDLIM3-213ENST00000629667 ARAP1Q96P48 1450 aa28.8■■■□□ 2.2
PDLIM3-213ENST00000629667 TDRD9Q8NDG6 1382 aaKnown RBP28.79■■■□□ 2.2
PDLIM3-213ENST00000629667 TRHP20396 242 aaPredicted RBP28.75■■■□□ 2.19
PDLIM3-213ENST00000629667 FGD5Q6ZNL6 1462 aa28.73■■■□□ 2.19
PDLIM3-213ENST00000629667 WDR97A6NE52 1622 aa28.73■■■□□ 2.19
PDLIM3-213ENST00000629667 SNAPC4Q5SXM2 1469 aa28.72■■■□□ 2.19
PDLIM3-213ENST00000629667 CHMP7Q8WUX9 453 aaPredicted RBP28.66■■■□□ 2.18
PDLIM3-213ENST00000629667 CUX1P39880 1505 aa28.65■■■□□ 2.18
PDLIM3-213ENST00000629667 MAGI1Q96QZ7 1491 aaPredicted RBP28.63■■■□□ 2.17
PDLIM3-213ENST00000629667 CLASP1Q7Z460 1538 aa28.63■■■□□ 2.17
PDLIM3-213ENST00000629667 SYNJ1O43426 1573 aa28.62■■■□□ 2.17
PDLIM3-213ENST00000629667 GRIN2BQ13224 1484 aa28.59■■■□□ 2.17
PDLIM3-213ENST00000629667 SYNJ2O15056 1496 aa28.54■■■□□ 2.16
PDLIM3-213ENST00000629667 PBRM1Q86U86 1689 aa28.51■■■□□ 2.16
PDLIM3-213ENST00000629667 GAPVD1Q14C86 1478 aa28.46■■■□□ 2.15
PDLIM3-213ENST00000629667 ABCA10Q8WWZ4 1543 aa28.38■■■□□ 2.13
PDLIM3-213ENST00000629667 ABCA5Q8WWZ7 1642 aa28.37■■■□□ 2.13
PDLIM3-213ENST00000629667 SUPT5HO00267 1087 aaKnown RBP28.26■■■□□ 2.11
PDLIM3-213ENST00000629667 GRIN2AQ12879 1464 aa28.23■■■□□ 2.11
PDLIM3-213ENST00000629667 WRNQ14191 1432 aaPredicted RBP eCLIP28.23■■■□□ 2.11
PDLIM3-213ENST00000629667 ADAMTS12P58397 1594 aa28.18■■■□□ 2.1
PDLIM3-213ENST00000629667 ERCC6L2Q5T890 1561 aa28.16■■■□□ 2.1
PDLIM3-213ENST00000629667 CEP170Q5SW79 1584 aa28.15■■■□□ 2.1
PDLIM3-213ENST00000629667 BIVM-ERCC5R4GMW8 1640 aa28.14■■■□□ 2.1
PDLIM3-213ENST00000629667 TOP2BQ02880 1626 aa28.14■■■□□ 2.09
PDLIM3-213ENST00000629667 NUP160Q12769 1436 aa28.13■■■□□ 2.09
PDLIM3-213ENST00000629667 AEBP2Q6ZN18 517 aaPredicted RBP28.13■■■□□ 2.09
PDLIM3-213ENST00000629667 FHAD1B1AJZ9 1412 aa28.09■■■□□ 2.09
PDLIM3-213ENST00000629667 SHROOM2Q13796 1616 aa28.06■■■□□ 2.08
PDLIM3-213ENST00000629667 ERICH3Q5RHP9 1530 aa28.03■■■□□ 2.08
PDLIM3-213ENST00000629667 PRG4Q92954 1404 aaPredicted RBP27.9■■■□□ 2.06
PDLIM3-213ENST00000629667 JPH4Q96JJ6 628 aa27.87■■■□□ 2.05
PDLIM3-213ENST00000629667 KIF13AQ9H1H9 1805 aa27.87■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 121.2 ms