RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 RUSC2Q8N2Y8 1516 aa26.24■■□□□ 1.79
PNKP-218ENST00000625299 FAM69CQ0P6D2 419 aa26.18■■□□□ 1.78
PNKP-218ENST00000625299 NPM1P06748 294 aaKnown RBP eCLIP26.17■■□□□ 1.78
PNKP-218ENST00000625299 ABCC10Q5T3U5 1492 aa26.14■■□□□ 1.78
PNKP-218ENST00000625299 ADCY10Q96PN6 1610 aa26.11■■□□□ 1.77
PNKP-218ENST00000625299 MAPKBP1O60336 1514 aa26.11■■□□□ 1.77
PNKP-218ENST00000625299 DIP2BQ9P265 1576 aa26.11■■□□□ 1.77
PNKP-218ENST00000625299 KIAA0586Q9BVV6 1533 aa26.02■■□□□ 1.76
PNKP-218ENST00000625299 TSPOAP1O95153 1857 aa26.02■■□□□ 1.76
PNKP-218ENST00000625299 KDM6BO15054 1643 aa26■■□□□ 1.75
PNKP-218ENST00000625299 CUL7Q14999 1698 aa25.99■■□□□ 1.75
PNKP-218ENST00000625299 KIF27Q86VH2 1401 aa25.97■■□□□ 1.75
PNKP-218ENST00000625299 IGF1RP08069 1367 aa25.96■■□□□ 1.75
PNKP-218ENST00000625299 TTBK1Q5TCY1 1321 aaPredicted RBP25.95■■□□□ 1.75
PNKP-218ENST00000625299 PTPRGP23470 1445 aa25.88■■□□□ 1.73
PNKP-218ENST00000625299 KDM4FA0A1W2PPD8 638 aa25.86■■□□□ 1.73
PNKP-218ENST00000625299 CARMIL1Q5VZK9 1371 aa25.82■■□□□ 1.72
PNKP-218ENST00000625299 CARMIL2Q6F5E8 1435 aa25.8■■□□□ 1.72
PNKP-218ENST00000625299 TNIKQ9UKE5 1360 aa25.8■■□□□ 1.72
PNKP-218ENST00000625299 ABCC2Q92887 1545 aa25.78■■□□□ 1.72
PNKP-218ENST00000625299 IQGAP2Q13576 1575 aa25.77■■□□□ 1.72
PNKP-218ENST00000625299 ASXL2Q76L83 1435 aa25.76■■□□□ 1.71
PNKP-218ENST00000625299 PLB1Q6P1J6 1458 aa25.72■■□□□ 1.71
PNKP-218ENST00000625299 PPRC1Q5VV67 1664 aaKnown RBP25.71■■□□□ 1.71
PNKP-218ENST00000625299 GLI2P10070 1586 aa25.69■■□□□ 1.7
PNKP-218ENST00000625299 UACAQ9BZF9 1416 aa25.67■■□□□ 1.7
PNKP-218ENST00000625299 UHRF1BP1LA0JNW5 1464 aa25.66■■□□□ 1.7
PNKP-218ENST00000625299 DISP1Q96F81 1524 aa25.64■■□□□ 1.7
PNKP-218ENST00000625299 ADGRL1O94910 1474 aa25.6■■□□□ 1.69
PNKP-218ENST00000625299 EPRSP07814 1512 aaKnown RBP25.59■■□□□ 1.69
PNKP-218ENST00000625299 ZCCHC11Q5TAX3 1644 aaKnown RBP25.58■■□□□ 1.69
PNKP-218ENST00000625299 MAP3K4Q9Y6R4 1608 aa25.57■■□□□ 1.68
PNKP-218ENST00000625299 KDM5BQ9UGL1 1544 aa25.56■■□□□ 1.68
PNKP-218ENST00000625299 COL17A1Q9UMD9 1497 aaPredicted RBP25.54■■□□□ 1.68
PNKP-218ENST00000625299 RAPGEF2Q9Y4G8 1499 aa25.54■■□□□ 1.68
PNKP-218ENST00000625299 UGGT2Q9NYU1 1516 aa25.54■■□□□ 1.68
PNKP-218ENST00000625299 KIAA0556O60303 1618 aa25.54■■□□□ 1.68
PNKP-218ENST00000625299 TEX14Q8IWB6 1497 aa25.53■■□□□ 1.68
PNKP-218ENST00000625299 ILDR1Q86SU0 546 aaPredicted RBP25.49■■□□□ 1.67
PNKP-218ENST00000625299 WDR7Q9Y4E6 1490 aa25.44■■□□□ 1.66
PNKP-218ENST00000625299 CTTNBP2Q8WZ74 1663 aa25.41■■□□□ 1.66
PNKP-218ENST00000625299 HECW2Q9P2P5 1572 aa25.39■■□□□ 1.65
PNKP-218ENST00000625299 KCNH8Q96L42 1107 aa25.34■■□□□ 1.65
PNKP-218ENST00000625299 CD109Q6YHK3 1445 aa25.33■■□□□ 1.65
PNKP-218ENST00000625299 CFAP43Q8NDM7 1665 aa25.32■■□□□ 1.64
PNKP-218ENST00000625299 GOLGA3Q08378 1498 aa25.32■■□□□ 1.64
PNKP-218ENST00000625299 ABCA8O94911 1581 aa25.3■■□□□ 1.64
PNKP-218ENST00000625299 MAGI3Q5TCQ9 1506 aa25.28■■□□□ 1.64
PNKP-218ENST00000625299 KIF21BO75037 1637 aa25.23■■□□□ 1.63
PNKP-218ENST00000625299 ARID3CA6NKF2 412 aa25.22■■□□□ 1.63
PNKP-218ENST00000625299 PRXQ9BXM0 1461 aa25.15■■□□□ 1.62
PNKP-218ENST00000625299 P3H3Q8IVL6 736 aa25.14■■□□□ 1.62
PNKP-218ENST00000625299 FAM9AQ8IZU1 332 aaPredicted RBP25.12■■□□□ 1.61
PNKP-218ENST00000625299 ARAP3Q8WWN8 1544 aa25.09■■□□□ 1.61
PNKP-218ENST00000625299 ATP10BO94823 1461 aa25.08■■□□□ 1.6
PNKP-218ENST00000625299 ABCA9Q8IUA7 1624 aa25.04■■□□□ 1.6
PNKP-218ENST00000625299 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.01■■□□□ 1.59
PNKP-218ENST00000625299 HNRNPUL2Q1KMD3 747 aaKnown RBP25.01■■□□□ 1.59
PNKP-218ENST00000625299 RAPGEF3O95398 923 aa24.99■■□□□ 1.59
PNKP-218ENST00000625299 RAPGEF6Q8TEU7 1601 aa24.99■■□□□ 1.59
PNKP-218ENST00000625299 SAMD9Q5K651 1589 aa24.98■■□□□ 1.59
PNKP-218ENST00000625299 ADAMTSL3P82987 1691 aa24.97■■□□□ 1.59
PNKP-218ENST00000625299 PTPRMP28827 1452 aa24.97■■□□□ 1.59
PNKP-218ENST00000625299 PHLDB1Q86UU1 1377 aa24.97■■□□□ 1.59
PNKP-218ENST00000625299 NEO1Q92859 1461 aa24.95■■□□□ 1.58
PNKP-218ENST00000625299 ARID4BQ4LE39 1312 aaPredicted RBP24.93■■□□□ 1.58
PNKP-218ENST00000625299 RANGAP1P46060 587 aaPredicted RBP24.93■■□□□ 1.58
PNKP-218ENST00000625299 FRMPD1Q5SYB0 1578 aa24.91■■□□□ 1.58
PNKP-218ENST00000625299 BCORL1Q5H9F3 1711 aa24.9■■□□□ 1.58
PNKP-218ENST00000625299 MADDQ8WXG6 1647 aa24.9■■□□□ 1.58
PNKP-218ENST00000625299 FBXO41Q8TF61 875 aa24.88■■□□□ 1.57
PNKP-218ENST00000625299 CSRNP3Q8WYN3 585 aa24.88■■□□□ 1.57
PNKP-218ENST00000625299 NUP153P49790 1475 aaKnown RBP24.87■■□□□ 1.57
PNKP-218ENST00000625299 FHOD3Q2V2M9 1422 aa24.85■■□□□ 1.57
PNKP-218ENST00000625299 PCF11O94913 1555 aaKnown RBP24.83■■□□□ 1.57
PNKP-218ENST00000625299 RIMS1Q86UR5 1692 aaKnown RBP24.81■■□□□ 1.56
PNKP-218ENST00000625299 ARHGEF40Q8TER5 1519 aa24.81■■□□□ 1.56
PNKP-218ENST00000625299 DENND4BO75064 1496 aaPredicted RBP24.79■■□□□ 1.56
PNKP-218ENST00000625299 RICTORQ6R327 1708 aa24.79■■□□□ 1.56
PNKP-218ENST00000625299 PLEKHD1A6NEE1 506 aa24.78■■□□□ 1.56
PNKP-218ENST00000625299 PLPPR3Q6T4P5 718 aa24.78■■□□□ 1.56
PNKP-218ENST00000625299 LMTK3Q96Q04 1460 aa24.77■■□□□ 1.56
PNKP-218ENST00000625299 AKNAQ7Z591 1439 aa24.76■■□□□ 1.55
PNKP-218ENST00000625299 FANCAO15360 1455 aa24.76■■□□□ 1.55
PNKP-218ENST00000625299 CFAP74Q9C0B2 1584 aa24.76■■□□□ 1.55
PNKP-218ENST00000625299 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.73■■□□□ 1.55
PNKP-218ENST00000625299 TTC37Q6PGP7 1564 aa24.72■■□□□ 1.55
PNKP-218ENST00000625299 ZFYVE16Q7Z3T8 1539 aa24.69■■□□□ 1.54
PNKP-218ENST00000625299 EEA1Q15075 1411 aa24.69■■□□□ 1.54
PNKP-218ENST00000625299 HSPA2P54652 639 aa24.68■■□□□ 1.54
PNKP-218ENST00000625299 POGZQ7Z3K3 1410 aa24.68■■□□□ 1.54
PNKP-218ENST00000625299 SIGLEC1Q9BZZ2 1709 aa24.66■■□□□ 1.54
PNKP-218ENST00000625299 ZMYM4Q5VZL5 1548 aa24.66■■□□□ 1.54
PNKP-218ENST00000625299 YEATS2Q9ULM3 1422 aa24.66■■□□□ 1.54
PNKP-218ENST00000625299 EFCAB5A4FU69 1503 aa24.66■■□□□ 1.54
PNKP-218ENST00000625299 MLECQ14165 292 aa24.64■■□□□ 1.54
PNKP-218ENST00000625299 CDK13Q14004 1512 aaKnown RBP24.64■■□□□ 1.53
PNKP-218ENST00000625299 HECW1Q76N89 1606 aa24.61■■□□□ 1.53
PNKP-218ENST00000625299 FER1L4A9Z1Z3 1794 aa24.61■■□□□ 1.53
PNKP-218ENST00000625299 MAGI2Q86UL8 1455 aa24.58■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms