RNA–Protein interactions for RNA: ENST00000623007.3

LDB3-208, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,664 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-208ENST00000623007 ZEB1P37275 1124 aaPredicted RBP25.07■■□□□ 1.6
LDB3-208ENST00000623007 RANGAP1P46060 587 aaPredicted RBP25.07■■□□□ 1.6
LDB3-208ENST00000623007 PPARGC1BQ86YN6 1023 aaKnown RBP25.05■■□□□ 1.6
LDB3-208ENST00000623007 ADAMTS12P58397 1594 aa25.04■■□□□ 1.6
LDB3-208ENST00000623007 AQRO60306 1485 aaKnown RBP eCLIP24.98■■□□□ 1.59
LDB3-208ENST00000623007 FMN1Q68DA7 1419 aa24.95■■□□□ 1.58
LDB3-208ENST00000623007 EIF4G3O43432 1585 aaKnown RBP24.93■■□□□ 1.58
LDB3-208ENST00000623007 SAMD9Q5K651 1589 aa24.93■■□□□ 1.58
LDB3-208ENST00000623007 MAGI1Q96QZ7 1491 aaPredicted RBP24.92■■□□□ 1.58
LDB3-208ENST00000623007 FYCO1Q9BQS8 1478 aa24.9■■□□□ 1.58
LDB3-208ENST00000623007 ZNF608Q9ULD9 1512 aaPredicted RBP24.89■■□□□ 1.58
LDB3-208ENST00000623007 TIAM1Q13009 1591 aa24.88■■□□□ 1.57
LDB3-208ENST00000623007 IQGAP2Q13576 1575 aa24.86■■□□□ 1.57
LDB3-208ENST00000623007 CASKIN1Q8WXD9 1431 aa24.86■■□□□ 1.57
LDB3-208ENST00000623007 CFAP43Q8NDM7 1665 aa24.83■■□□□ 1.57
LDB3-208ENST00000623007 SNAPC4Q5SXM2 1469 aa24.82■■□□□ 1.56
LDB3-208ENST00000623007 TTBK1Q5TCY1 1321 aaPredicted RBP24.81■■□□□ 1.56
LDB3-208ENST00000623007 FHOD3Q2V2M9 1422 aa24.8■■□□□ 1.56
LDB3-208ENST00000623007 PCF11O94913 1555 aaKnown RBP24.8■■□□□ 1.56
LDB3-208ENST00000623007 KIAA0586Q9BVV6 1533 aa24.79■■□□□ 1.56
LDB3-208ENST00000623007 GRIN2AQ12879 1464 aa24.79■■□□□ 1.56
LDB3-208ENST00000623007 SYNJ2O15056 1496 aa24.78■■□□□ 1.56
LDB3-208ENST00000623007 UGGT2Q9NYU1 1516 aa24.78■■□□□ 1.56
LDB3-208ENST00000623007 RRBP1Q9P2E9 1410 aaKnown RBP24.75■■□□□ 1.55
LDB3-208ENST00000623007 LRRC9Q6ZRR7 1453 aa24.75■■□□□ 1.55
LDB3-208ENST00000623007 KANK4Q5T7N3 995 aaPredicted RBP24.72■■□□□ 1.55
LDB3-208ENST00000623007 P3H3Q8IVL6 736 aa24.69■■□□□ 1.54
LDB3-208ENST00000623007 CHMP7Q8WUX9 453 aaPredicted RBP24.66■■□□□ 1.54
LDB3-208ENST00000623007 CCDC18Q5T9S5 1454 aa24.65■■□□□ 1.54
LDB3-208ENST00000623007 HECW1Q76N89 1606 aa24.62■■□□□ 1.53
LDB3-208ENST00000623007 CCNB3Q8WWL7 1395 aa24.62■■□□□ 1.53
LDB3-208ENST00000623007 CCER1Q8TC90 406 aaPredicted RBP24.62■■□□□ 1.53
LDB3-208ENST00000623007 NUP160Q12769 1436 aa24.61■■□□□ 1.53
LDB3-208ENST00000623007 DNAJC5Q9H3Z4 198 aa24.6■■□□□ 1.53
LDB3-208ENST00000623007 KIAA0556O60303 1618 aa24.58■■□□□ 1.52
LDB3-208ENST00000623007 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.55■■□□□ 1.52
LDB3-208ENST00000623007 ATP1B4Q9UN42 357 aaPredicted RBP24.55■■□□□ 1.52
LDB3-208ENST00000623007 CEP170Q5SW79 1584 aa24.54■■□□□ 1.52
LDB3-208ENST00000623007 EHBP1L1Q8N3D4 1523 aa24.53■■□□□ 1.52
LDB3-208ENST00000623007 CARMIL2Q6F5E8 1435 aa24.53■■□□□ 1.52
LDB3-208ENST00000623007 DISP1Q96F81 1524 aa24.51■■□□□ 1.51
LDB3-208ENST00000623007 MTUS2Q5JR59 1369 aa24.51■■□□□ 1.51
LDB3-208ENST00000623007 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.5■■□□□ 1.51
LDB3-208ENST00000623007 HNRNPUL2Q1KMD3 747 aaKnown RBP24.5■■□□□ 1.51
LDB3-208ENST00000623007 SUPT6HQ7KZ85 1726 aaKnown RBP24.47■■□□□ 1.51
LDB3-208ENST00000623007 LRRIQ1Q96JM4 1722 aa24.45■■□□□ 1.5
LDB3-208ENST00000623007 PHLDB1Q86UU1 1377 aa24.44■■□□□ 1.5
LDB3-208ENST00000623007 CLSPNQ9HAW4 1339 aa24.44■■□□□ 1.5
LDB3-208ENST00000623007 EPRSP07814 1512 aaKnown RBP24.43■■□□□ 1.5
LDB3-208ENST00000623007 FBLN2P98095 1184 aa24.42■■□□□ 1.5
LDB3-208ENST00000623007 RAPGEF6Q8TEU7 1601 aa24.4■■□□□ 1.5
LDB3-208ENST00000623007 JPH4Q96JJ6 628 aa24.38■■□□□ 1.49
LDB3-208ENST00000623007 CDK11AQ9UQ88 783 aaPredicted RBP24.36■■□□□ 1.49
LDB3-208ENST00000623007 ARHGEF11O15085 1522 aa24.35■■□□□ 1.49
LDB3-208ENST00000623007 FGD6Q6ZV73 1430 aa24.35■■□□□ 1.49
LDB3-208ENST00000623007 NCOA2Q15596 1464 aa24.35■■□□□ 1.49
LDB3-208ENST00000623007 MYOM3Q5VTT5 1437 aa24.34■■□□□ 1.49
LDB3-208ENST00000623007 CHD1O14646 1710 aa24.31■■□□□ 1.48
LDB3-208ENST00000623007 NUP153P49790 1475 aaKnown RBP24.28■■□□□ 1.48
LDB3-208ENST00000623007 MIA2Q96PC5 1412 aa24.27■■□□□ 1.48
LDB3-208ENST00000623007 FAM50AQ14320 339 aaKnown RBP24.25■■□□□ 1.47
LDB3-208ENST00000623007 SHROOM2Q13796 1616 aa24.24■■□□□ 1.47
LDB3-208ENST00000623007 MAGI3Q5TCQ9 1506 aa24.23■■□□□ 1.47
LDB3-208ENST00000623007 CDK13Q14004 1512 aaKnown RBP24.23■■□□□ 1.47
LDB3-208ENST00000623007 SETD5Q9C0A6 1442 aa24.23■■□□□ 1.47
LDB3-208ENST00000623007 TCOF1Q13428 1488 aaKnown RBP24.21■■□□□ 1.47
LDB3-208ENST00000623007 ABCA8O94911 1581 aa24.2■■□□□ 1.46
LDB3-208ENST00000623007 PTPN23Q9H3S7 1636 aa24.19■■□□□ 1.46
LDB3-208ENST00000623007 PRG4Q92954 1404 aaPredicted RBP24.18■■□□□ 1.46
LDB3-208ENST00000623007 ACIN1Q9UKV3 1341 aaKnown RBP24.17■■□□□ 1.46
LDB3-208ENST00000623007 DHX57Q6P158 1386 aaKnown RBP24.17■■□□□ 1.46
LDB3-208ENST00000623007 TROQ12816 1431 aaPredicted RBP24.16■■□□□ 1.46
LDB3-208ENST00000623007 PLB1Q6P1J6 1458 aa24.14■■□□□ 1.46
LDB3-208ENST00000623007 ADCY10Q96PN6 1610 aa24.14■■□□□ 1.46
LDB3-208ENST00000623007 ITGAEP38570 1179 aa24.14■■□□□ 1.45
LDB3-208ENST00000623007 RAB3GAP2Q9H2M9 1393 aa24.13■■□□□ 1.45
LDB3-208ENST00000623007 PTPRGP23470 1445 aa24.12■■□□□ 1.45
LDB3-208ENST00000623007 ITSN2Q9NZM3 1697 aa24.1■■□□□ 1.45
LDB3-208ENST00000623007 AKNAQ7Z591 1439 aa24.09■■□□□ 1.45
LDB3-208ENST00000623007 HFM1A2PYH4 1435 aa24.08■■□□□ 1.45
LDB3-208ENST00000623007 CLASP1Q7Z460 1538 aa24.08■■□□□ 1.45
LDB3-208ENST00000623007 PLEKHD1A6NEE1 506 aa24.04■■□□□ 1.44
LDB3-208ENST00000623007 UACAQ9BZF9 1416 aa24.01■■□□□ 1.43
LDB3-208ENST00000623007 KIF14Q15058 1648 aa24.01■■□□□ 1.43
LDB3-208ENST00000623007 ATP10BO94823 1461 aa24■■□□□ 1.43
LDB3-208ENST00000623007 GCC2Q8IWJ2 1684 aa23.96■■□□□ 1.43
LDB3-208ENST00000623007 ROCK1Q13464 1354 aa23.95■■□□□ 1.42
LDB3-208ENST00000623007 ABCC2Q92887 1545 aa23.95■■□□□ 1.42
LDB3-208ENST00000623007 DNMT1P26358 1616 aaKnown RBP23.94■■□□□ 1.42
LDB3-208ENST00000623007 NAIPQ13075 1403 aa23.93■■□□□ 1.42
LDB3-208ENST00000623007 ARID3CA6NKF2 412 aa23.93■■□□□ 1.42
LDB3-208ENST00000623007 TIMELESSQ9UNS1 1208 aa23.92■■□□□ 1.42
LDB3-208ENST00000623007 UHRF1BP1LA0JNW5 1464 aa23.92■■□□□ 1.42
LDB3-208ENST00000623007 PTPRKQ15262 1439 aa23.92■■□□□ 1.42
LDB3-208ENST00000623007 GPATCH8Q9UKJ3 1502 aaKnown RBP23.92■■□□□ 1.42
LDB3-208ENST00000623007 CFDP1Q9UEE9 299 aaPredicted RBP23.89■■□□□ 1.41
LDB3-208ENST00000623007 DAPK1P53355 1430 aa23.89■■□□□ 1.41
LDB3-208ENST00000623007 MAPKBP1O60336 1514 aa23.87■■□□□ 1.41
LDB3-208ENST00000623007 ABCC10Q5T3U5 1492 aa23.87■■□□□ 1.41
LDB3-208ENST00000623007 CAMSAP2Q08AD1 1489 aa23.85■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms