RNA–Protein interactions for RNA: ENST00000622555.1

PTCHD3-202, Transcript of patched domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene PTCHD3, Length 1,720 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3-202ENST00000622555 CEP170Q5SW79 1584 aa28.62■■■□□ 2.17
PTCHD3-202ENST00000622555 CEP162Q5TB80 1403 aa28.61■■■□□ 2.17
PTCHD3-202ENST00000622555 NUP160Q12769 1436 aa28.6■■■□□ 2.17
PTCHD3-202ENST00000622555 RANGAP1P46060 587 aaPredicted RBP28.57■■■□□ 2.16
PTCHD3-202ENST00000622555 IQGAP2Q13576 1575 aa28.55■■■□□ 2.16
PTCHD3-202ENST00000622555 KIAA0586Q9BVV6 1533 aa28.54■■■□□ 2.16
PTCHD3-202ENST00000622555 CLIP1P30622 1438 aa28.52■■■□□ 2.16
PTCHD3-202ENST00000622555 ARHGAP35Q9NRY4 1499 aa28.39■■■□□ 2.14
PTCHD3-202ENST00000622555 UGGT2Q9NYU1 1516 aa28.39■■■□□ 2.14
PTCHD3-202ENST00000622555 EFCAB5A4FU69 1503 aa28.38■■■□□ 2.13
PTCHD3-202ENST00000622555 CLASP1Q7Z460 1538 aa28.38■■■□□ 2.13
PTCHD3-202ENST00000622555 SAMD9Q5K651 1589 aa28.36■■■□□ 2.13
PTCHD3-202ENST00000622555 OSCARQ8IYS5 282 aa28.34■■■□□ 2.13
PTCHD3-202ENST00000622555 JPH4Q96JJ6 628 aa28.33■■■□□ 2.13
PTCHD3-202ENST00000622555 ARAP1Q96P48 1450 aa28.3■■■□□ 2.12
PTCHD3-202ENST00000622555 P3H3Q8IVL6 736 aa28.3■■■□□ 2.12
PTCHD3-202ENST00000622555 SHROOM2Q13796 1616 aa28.3■■■□□ 2.12
PTCHD3-202ENST00000622555 KIAA0556O60303 1618 aa28.27■■■□□ 2.12
PTCHD3-202ENST00000622555 DISP1Q96F81 1524 aa28.27■■■□□ 2.12
PTCHD3-202ENST00000622555 FHOD3Q2V2M9 1422 aa28.26■■■□□ 2.11
PTCHD3-202ENST00000622555 CARMIL2Q6F5E8 1435 aa28.23■■■□□ 2.11
PTCHD3-202ENST00000622555 PRG4Q92954 1404 aaPredicted RBP28.23■■■□□ 2.11
PTCHD3-202ENST00000622555 VPS8Q8N3P4 1428 aa28.19■■■□□ 2.1
PTCHD3-202ENST00000622555 ERCC6L2Q5T890 1561 aa28.12■■■□□ 2.09
PTCHD3-202ENST00000622555 FMN1Q68DA7 1419 aa28.11■■■□□ 2.09
PTCHD3-202ENST00000622555 TTBK1Q5TCY1 1321 aaPredicted RBP28.08■■■□□ 2.09
PTCHD3-202ENST00000622555 PCF11O94913 1555 aaKnown RBP28.04■■■□□ 2.08
PTCHD3-202ENST00000622555 PTPRGP23470 1445 aa27.99■■■□□ 2.07
PTCHD3-202ENST00000622555 CASKIN1Q8WXD9 1431 aa27.99■■■□□ 2.07
PTCHD3-202ENST00000622555 FYCO1Q9BQS8 1478 aa27.98■■■□□ 2.07
PTCHD3-202ENST00000622555 ATP1B4Q9UN42 357 aaPredicted RBP27.95■■■□□ 2.06
PTCHD3-202ENST00000622555 RAPGEF6Q8TEU7 1601 aa27.94■■■□□ 2.06
PTCHD3-202ENST00000622555 HECW1Q76N89 1606 aa27.91■■■□□ 2.06
PTCHD3-202ENST00000622555 PLB1Q6P1J6 1458 aa27.91■■■□□ 2.06
PTCHD3-202ENST00000622555 APLP2Q06481 763 aa27.9■■■□□ 2.06
PTCHD3-202ENST00000622555 ARHGEF11O15085 1522 aa27.89■■■□□ 2.06
PTCHD3-202ENST00000622555 ABCA8O94911 1581 aa27.88■■■□□ 2.05
PTCHD3-202ENST00000622555 LRRIQ1Q96JM4 1722 aa27.87■■■□□ 2.05
PTCHD3-202ENST00000622555 RIMBP3CA6NJZ7 1639 aa27.83■■■□□ 2.04
PTCHD3-202ENST00000622555 RIMBP3BA6NNM3 1639 aa27.83■■■□□ 2.04
PTCHD3-202ENST00000622555 RIMBP3Q9UFD9 1639 aa27.83■■■□□ 2.04
PTCHD3-202ENST00000622555 UACAQ9BZF9 1416 aa27.82■■■□□ 2.04
PTCHD3-202ENST00000622555 NUP153P49790 1475 aaKnown RBP27.82■■■□□ 2.04
PTCHD3-202ENST00000622555 CFAP43Q8NDM7 1665 aa27.82■■■□□ 2.04
PTCHD3-202ENST00000622555 TIAM1Q13009 1591 aa27.81■■■□□ 2.04
PTCHD3-202ENST00000622555 MAP3K1Q13233 1512 aa27.79■■■□□ 2.04
PTCHD3-202ENST00000622555 CCDC18Q5T9S5 1454 aa27.79■■■□□ 2.04
PTCHD3-202ENST00000622555 EPRSP07814 1512 aaKnown RBP27.78■■■□□ 2.04
PTCHD3-202ENST00000622555 ARID3CA6NKF2 412 aa27.77■■■□□ 2.04
PTCHD3-202ENST00000622555 PPARGC1BQ86YN6 1023 aaKnown RBP27.77■■■□□ 2.04
PTCHD3-202ENST00000622555 ABCC2Q92887 1545 aa27.77■■■□□ 2.04
PTCHD3-202ENST00000622555 CDK13Q14004 1512 aaKnown RBP27.75■■■□□ 2.03
PTCHD3-202ENST00000622555 UHRF1BP1LA0JNW5 1464 aa27.72■■■□□ 2.03
PTCHD3-202ENST00000622555 ADCY10Q96PN6 1610 aa27.69■■■□□ 2.02
PTCHD3-202ENST00000622555 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.68■■■□□ 2.02
PTCHD3-202ENST00000622555 HNRNPUL2Q1KMD3 747 aaKnown RBP27.68■■■□□ 2.02
PTCHD3-202ENST00000622555 KANK4Q5T7N3 995 aaPredicted RBP27.68■■■□□ 2.02
PTCHD3-202ENST00000622555 ATP10BO94823 1461 aa27.66■■■□□ 2.02
PTCHD3-202ENST00000622555 LRRC9Q6ZRR7 1453 aa27.66■■■□□ 2.02
PTCHD3-202ENST00000622555 CYB5RLQ6IPT4 315 aa27.61■■■□□ 2.01
PTCHD3-202ENST00000622555 MTUS2Q5JR59 1369 aa27.61■■■□□ 2.01
PTCHD3-202ENST00000622555 ZCCHC11Q5TAX3 1644 aaKnown RBP27.6■■■□□ 2.01
PTCHD3-202ENST00000622555 KDM5BQ9UGL1 1544 aa27.6■■■□□ 2.01
PTCHD3-202ENST00000622555 MAGI3Q5TCQ9 1506 aa27.59■■■□□ 2.01
PTCHD3-202ENST00000622555 CDK11AQ9UQ88 783 aaPredicted RBP27.58■■■□□ 2.01
PTCHD3-202ENST00000622555 EHBP1L1Q8N3D4 1523 aa27.58■■■□□ 2.01
PTCHD3-202ENST00000622555 PLEKHD1A6NEE1 506 aa27.51■■□□□ 1.99
PTCHD3-202ENST00000622555 SUPT6HQ7KZ85 1726 aaKnown RBP27.51■■□□□ 1.99
PTCHD3-202ENST00000622555 TROQ12816 1431 aaPredicted RBP27.5■■□□□ 1.99
PTCHD3-202ENST00000622555 NPM1P06748 294 aaKnown RBP eCLIP27.48■■□□□ 1.99
PTCHD3-202ENST00000622555 DNAJC5Q9H3Z4 198 aa27.44■■□□□ 1.98
PTCHD3-202ENST00000622555 NCOA2Q15596 1464 aa27.43■■□□□ 1.98
PTCHD3-202ENST00000622555 KIF14Q15058 1648 aa27.41■■□□□ 1.98
PTCHD3-202ENST00000622555 ASXL2Q76L83 1435 aa27.37■■□□□ 1.97
PTCHD3-202ENST00000622555 WDR7Q9Y4E6 1490 aa27.37■■□□□ 1.97
PTCHD3-202ENST00000622555 PHLDB1Q86UU1 1377 aa27.37■■□□□ 1.97
PTCHD3-202ENST00000622555 TRIM26Q12899 539 aaPredicted RBP27.33■■□□□ 1.96
PTCHD3-202ENST00000622555 KCNH8Q96L42 1107 aa27.33■■□□□ 1.96
PTCHD3-202ENST00000622555 MAPKBP1O60336 1514 aa27.3■■□□□ 1.96
PTCHD3-202ENST00000622555 ABCC10Q5T3U5 1492 aa27.29■■□□□ 1.96
PTCHD3-202ENST00000622555 MYOM3Q5VTT5 1437 aa27.29■■□□□ 1.96
PTCHD3-202ENST00000622555 CCNB3Q8WWL7 1395 aa27.28■■□□□ 1.96
PTCHD3-202ENST00000622555 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.26■■□□□ 1.95
PTCHD3-202ENST00000622555 TTC37Q6PGP7 1564 aa27.25■■□□□ 1.95
PTCHD3-202ENST00000622555 ITSN2Q9NZM3 1697 aa27.25■■□□□ 1.95
PTCHD3-202ENST00000622555 RRBP1Q9P2E9 1410 aaKnown RBP27.24■■□□□ 1.95
PTCHD3-202ENST00000622555 CDC42BPAQ5VT25 1732 aa27.24■■□□□ 1.95
PTCHD3-202ENST00000622555 FGD6Q6ZV73 1430 aa27.23■■□□□ 1.95
PTCHD3-202ENST00000622555 GPATCH8Q9UKJ3 1502 aaKnown RBP27.21■■□□□ 1.95
PTCHD3-202ENST00000622555 MYO5CQ9NQX4 1742 aa27.2■■□□□ 1.94
PTCHD3-202ENST00000622555 ABCA9Q8IUA7 1624 aa27.18■■□□□ 1.94
PTCHD3-202ENST00000622555 PREX2Q70Z35 1606 aa27.17■■□□□ 1.94
PTCHD3-202ENST00000622555 PCGF6Q9BYE7 350 aa27.16■■□□□ 1.94
PTCHD3-202ENST00000622555 MIA2Q96PC5 1412 aa27.16■■□□□ 1.94
PTCHD3-202ENST00000622555 PTPN23Q9H3S7 1636 aa27.16■■□□□ 1.94
PTCHD3-202ENST00000622555 CDC42BPBQ9Y5S2 1711 aa27.15■■□□□ 1.94
PTCHD3-202ENST00000622555 FAM50AQ14320 339 aaKnown RBP27.13■■□□□ 1.93
PTCHD3-202ENST00000622555 CFDP1Q9UEE9 299 aaPredicted RBP27.13■■□□□ 1.93
PTCHD3-202ENST00000622555 ARHGAP5Q13017 1502 aa27.09■■□□□ 1.93
PTCHD3-202ENST00000622555 TCOF1Q13428 1488 aaKnown RBP27.09■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms