RNA–Protein interactions for RNA: ENST00000622555.1

PTCHD3-202, Transcript of patched domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene PTCHD3, Length 1,720 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3-202ENST00000622555 NISCHQ9Y2I1 1504 aa41.54■■■■■ 4.24
PTCHD3-202ENST00000622555 CCDC180Q9P1Z9 1646 aa36.55■■■■□ 3.44
PTCHD3-202ENST00000622555 ABCC9O60706 1549 aa34.98■■■■□ 3.19
PTCHD3-202ENST00000622555 ZCCHC6Q5VYS8 1495 aaKnown RBP34.79■■■■□ 3.16
PTCHD3-202ENST00000622555 DCAF8L2P0C7V8 631 aa34.45■■■■□ 3.11
PTCHD3-202ENST00000622555 DCAF1Q9Y4B6 1507 aa34.36■■■■□ 3.09
PTCHD3-202ENST00000622555 MYO15BQ96JP2 1530 aa34.16■■■■□ 3.06
PTCHD3-202ENST00000622555 NACADO15069 1562 aa34.14■■■■□ 3.06
PTCHD3-202ENST00000622555 RB1CC1Q8TDY2 1594 aa33.99■■■■□ 3.03
PTCHD3-202ENST00000622555 SCRIBQ14160 1630 aa33.5■■■□□ 2.95
PTCHD3-202ENST00000622555 SHROOM4Q9ULL8 1493 aa33.47■■■□□ 2.95
PTCHD3-202ENST00000622555 UNC13AQ9UPW8 1703 aa33.3■■■□□ 2.92
PTCHD3-202ENST00000622555 BICRAQ9NZM4 1560 aa32.93■■■□□ 2.86
PTCHD3-202ENST00000622555 PABPN1Q86U42 306 aaKnown RBP eCLIP32.84■■■□□ 2.85
PTCHD3-202ENST00000622555 CECR2Q9BXF3 1484 aa32.3■■■□□ 2.76
PTCHD3-202ENST00000622555 BAZ1AQ9NRL2 1556 aaPredicted RBP32.14■■■□□ 2.74
PTCHD3-202ENST00000622555 SMARCA4P51532 1647 aa32.08■■■□□ 2.73
PTCHD3-202ENST00000622555 MROH2BQ7Z745 1585 aa32.06■■■□□ 2.72
PTCHD3-202ENST00000622555 EIF4G1Q04637 1599 aaKnown RBP31.99■■■□□ 2.71
PTCHD3-202ENST00000622555 RSF1Q96T23 1441 aaPredicted RBP31.99■■■□□ 2.71
PTCHD3-202ENST00000622555 SUPT5HO00267 1087 aaKnown RBP31.93■■■□□ 2.7
PTCHD3-202ENST00000622555 WIZO95785 1651 aa31.8■■■□□ 2.68
PTCHD3-202ENST00000622555 PEG3Q9GZU2 1588 aa31.69■■■□□ 2.66
PTCHD3-202ENST00000622555 CC2D2AQ9P2K1 1620 aa31.66■■■□□ 2.66
PTCHD3-202ENST00000622555 SMARCA2P51531 1590 aa31.66■■■□□ 2.66
PTCHD3-202ENST00000622555 ATAD2BQ9ULI0 1458 aa31.65■■■□□ 2.66
PTCHD3-202ENST00000622555 TOP2AP11388 1531 aaKnown RBP31.47■■■□□ 2.63
PTCHD3-202ENST00000622555 NCAPD3P42695 1498 aa31.47■■■□□ 2.63
PTCHD3-202ENST00000622555 BAZ1BQ9UIG0 1483 aaKnown RBP31.47■■■□□ 2.63
PTCHD3-202ENST00000622555 HMGXB3Q12766 1538 aa31.42■■■□□ 2.62
PTCHD3-202ENST00000622555 DNAJC5BQ9UF47 199 aa31.27■■■□□ 2.6
PTCHD3-202ENST00000622555 CCDC88BA6NC98 1476 aa31.1■■■□□ 2.57
PTCHD3-202ENST00000622555 CADPSQ9ULU8 1353 aa30.62■■■□□ 2.49
PTCHD3-202ENST00000622555 CFTRP13569 1480 aa30.62■■■□□ 2.49
PTCHD3-202ENST00000622555 PRDM2Q13029 1718 aa30.54■■■□□ 2.48
PTCHD3-202ENST00000622555 NESP48681 1621 aa30.53■■■□□ 2.48
PTCHD3-202ENST00000622555 LAMC3Q9Y6N6 1575 aa30.53■■■□□ 2.48
PTCHD3-202ENST00000622555 FANCD2Q9BXW9 1451 aa30.3■■■□□ 2.44
PTCHD3-202ENST00000622555 ABCC8Q09428 1581 aa30.28■■■□□ 2.44
PTCHD3-202ENST00000622555 PDS5BQ9NTI5 1447 aa30.28■■■□□ 2.44
PTCHD3-202ENST00000622555 CHIC1Q5VXU3 224 aa30.27■■■□□ 2.44
PTCHD3-202ENST00000622555 KIF21AQ7Z4S6 1674 aa30.22■■■□□ 2.43
PTCHD3-202ENST00000622555 CEP164Q9UPV0 1460 aa30.18■■■□□ 2.42
PTCHD3-202ENST00000622555 WRNQ14191 1432 aaPredicted RBP eCLIP30.15■■■□□ 2.42
PTCHD3-202ENST00000622555 TRIM41Q8WV44 630 aa30.08■■■□□ 2.41
PTCHD3-202ENST00000622555 ERCC6Q03468 1493 aa30.07■■■□□ 2.4
PTCHD3-202ENST00000622555 SYNJ1O43426 1573 aa30.06■■■□□ 2.4
PTCHD3-202ENST00000622555 CUX1P39880 1505 aa30.03■■■□□ 2.4
PTCHD3-202ENST00000622555 TOP2BQ02880 1626 aa29.99■■■□□ 2.39
PTCHD3-202ENST00000622555 BIVM-ERCC5R4GMW8 1640 aa29.99■■■□□ 2.39
PTCHD3-202ENST00000622555 DNMBPQ6XZF7 1577 aa29.95■■■□□ 2.39
PTCHD3-202ENST00000622555 URB2Q14146 1524 aaKnown RBP29.95■■■□□ 2.38
PTCHD3-202ENST00000622555 MRC2Q9UBG0 1479 aa29.94■■■□□ 2.38
PTCHD3-202ENST00000622555 TOPBP1Q92547 1522 aa29.92■■■□□ 2.38
PTCHD3-202ENST00000622555 THOC2Q8NI27 1593 aaKnown RBP29.85■■■□□ 2.37
PTCHD3-202ENST00000622555 WDR62O43379 1518 aa29.8■■■□□ 2.36
PTCHD3-202ENST00000622555 FGD5Q6ZNL6 1462 aa29.79■■■□□ 2.36
PTCHD3-202ENST00000622555 POLA1P09884 1462 aaPredicted RBP29.72■■■□□ 2.35
PTCHD3-202ENST00000622555 SOGA1O94964 1423 aa29.61■■■□□ 2.33
PTCHD3-202ENST00000622555 RAD54L2Q9Y4B4 1467 aa29.6■■■□□ 2.33
PTCHD3-202ENST00000622555 CUX2O14529 1486 aa29.56■■■□□ 2.32
PTCHD3-202ENST00000622555 TARBP1Q13395 1621 aaKnown RBP29.52■■■□□ 2.32
PTCHD3-202ENST00000622555 ABCA10Q8WWZ4 1543 aa29.51■■■□□ 2.32
PTCHD3-202ENST00000622555 WDR97A6NE52 1622 aa29.51■■■□□ 2.31
PTCHD3-202ENST00000622555 FAM9AQ8IZU1 332 aaPredicted RBP29.49■■■□□ 2.31
PTCHD3-202ENST00000622555 RUSC2Q8N2Y8 1516 aa29.49■■■□□ 2.31
PTCHD3-202ENST00000622555 IFT140Q96RY7 1462 aa29.49■■■□□ 2.31
PTCHD3-202ENST00000622555 EEA1Q15075 1411 aa29.44■■■□□ 2.3
PTCHD3-202ENST00000622555 KIF27Q86VH2 1401 aa29.44■■■□□ 2.3
PTCHD3-202ENST00000622555 TDRD9Q8NDG6 1382 aaKnown RBP29.35■■■□□ 2.29
PTCHD3-202ENST00000622555 ABCA5Q8WWZ7 1642 aa29.34■■■□□ 2.29
PTCHD3-202ENST00000622555 ZNF608Q9ULD9 1512 aaPredicted RBP29.32■■■□□ 2.28
PTCHD3-202ENST00000622555 CSRNP3Q8WYN3 585 aa29.3■■■□□ 2.28
PTCHD3-202ENST00000622555 GAPVD1Q14C86 1478 aa29.29■■■□□ 2.28
PTCHD3-202ENST00000622555 AQRO60306 1485 aaKnown RBP eCLIP29.27■■■□□ 2.28
PTCHD3-202ENST00000622555 EIF4G3O43432 1585 aaKnown RBP29.25■■■□□ 2.27
PTCHD3-202ENST00000622555 PBRM1Q86U86 1689 aa29.22■■■□□ 2.27
PTCHD3-202ENST00000622555 IGF1RP08069 1367 aa29.2■■■□□ 2.27
PTCHD3-202ENST00000622555 ERICH3Q5RHP9 1530 aa29.17■■■□□ 2.26
PTCHD3-202ENST00000622555 GRIN2BQ13224 1484 aa29.15■■■□□ 2.26
PTCHD3-202ENST00000622555 KIF21BO75037 1637 aa29.11■■■□□ 2.25
PTCHD3-202ENST00000622555 CUL7Q14999 1698 aa29.11■■■□□ 2.25
PTCHD3-202ENST00000622555 EHMT2Q96KQ7 1210 aa29.09■■■□□ 2.25
PTCHD3-202ENST00000622555 PRXQ9BXM0 1461 aa29.08■■■□□ 2.25
PTCHD3-202ENST00000622555 LOC105371045A0A1W2PR82 267 aa29.07■■■□□ 2.24
PTCHD3-202ENST00000622555 CARMIL1Q5VZK9 1371 aa29.07■■■□□ 2.24
PTCHD3-202ENST00000622555 GOLGA3Q08378 1498 aa29.01■■■□□ 2.24
PTCHD3-202ENST00000622555 SNAPC4Q5SXM2 1469 aa29.01■■■□□ 2.24
PTCHD3-202ENST00000622555 RAPGEF2Q9Y4G8 1499 aa29.01■■■□□ 2.23
PTCHD3-202ENST00000622555 ADAMTS12P58397 1594 aa29■■■□□ 2.23
PTCHD3-202ENST00000622555 MAGI1Q96QZ7 1491 aaPredicted RBP28.97■■■□□ 2.23
PTCHD3-202ENST00000622555 FHAD1B1AJZ9 1412 aa28.96■■■□□ 2.23
PTCHD3-202ENST00000622555 UBTFP17480 764 aaKnown RBP28.89■■■□□ 2.22
PTCHD3-202ENST00000622555 SYNJ2O15056 1496 aa28.85■■■□□ 2.21
PTCHD3-202ENST00000622555 CHMP7Q8WUX9 453 aaPredicted RBP28.8■■■□□ 2.2
PTCHD3-202ENST00000622555 TNIKQ9UKE5 1360 aa28.79■■■□□ 2.2
PTCHD3-202ENST00000622555 GRIN2AQ12879 1464 aa28.79■■■□□ 2.2
PTCHD3-202ENST00000622555 FBLN2P98095 1184 aa28.78■■■□□ 2.2
PTCHD3-202ENST00000622555 CHD1O14646 1710 aa28.75■■■□□ 2.19
PTCHD3-202ENST00000622555 CTTNBP2Q8WZ74 1663 aa28.73■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 94.3 ms