RNA–Protein interactions for RNA: ENST00000621217.4

GGA3-222, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 4,181 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-222ENST00000621217 RAD54L2Q9Y4B4 1467 aa12.84□□□□□ -0.35
GGA3-222ENST00000621217 VPS8Q8N3P4 1428 aa12.84□□□□□ -0.35
GGA3-222ENST00000621217 CDK11AQ9UQ88 783 aaPredicted RBP12.83□□□□□ -0.36
GGA3-222ENST00000621217 PDS5BQ9NTI5 1447 aa12.83□□□□□ -0.36
GGA3-222ENST00000621217 SIN3AQ96ST3 1273 aa12.83□□□□□ -0.36
GGA3-222ENST00000621217 SYNJ1O43426 1573 aa12.82□□□□□ -0.36
GGA3-222ENST00000621217 CC2D2AQ9P2K1 1620 aa12.81□□□□□ -0.36
GGA3-222ENST00000621217 FGD5Q6ZNL6 1462 aa12.78□□□□□ -0.36
GGA3-222ENST00000621217 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.77□□□□□ -0.372e-7■■■□□ 16.1
GGA3-222ENST00000621217 FHOD3Q2V2M9 1422 aa12.76□□□□□ -0.37
GGA3-222ENST00000621217 IGF1RP08069 1367 aa12.75□□□□□ -0.37
GGA3-222ENST00000621217 ANP32CO43423 234 aa12.73□□□□□ -0.37
GGA3-222ENST00000621217 SENP3Q9H4L4 574 aaPredicted RBP12.73□□□□□ -0.37
GGA3-222ENST00000621217 CFTRP13569 1480 aa12.72□□□□□ -0.37
GGA3-222ENST00000621217 CCNB3Q8WWL7 1395 aa12.71□□□□□ -0.37
GGA3-222ENST00000621217 PLEKHD1A6NEE1 506 aa12.7□□□□□ -0.38
GGA3-222ENST00000621217 TONSLQ96HA7 1378 aa12.69□□□□□ -0.38
GGA3-222ENST00000621217 SLC4A1APQ9BWU0 796 aaKnown RBP12.69□□□□□ -0.38
GGA3-222ENST00000621217 AQRO60306 1485 aaKnown RBP eCLIP12.69□□□□□ -0.381e-7■■■■□ 25.8
GGA3-222ENST00000621217 RTL5Q5HYW3 569 aaPredicted RBP12.68□□□□□ -0.38
GGA3-222ENST00000621217 CFDP1Q9UEE9 299 aaPredicted RBP12.68□□□□□ -0.38
GGA3-222ENST00000621217 CUX1P39880 1505 aa12.67□□□□□ -0.38
GGA3-222ENST00000621217 KDM2AQ9Y2K7 1162 aa12.66□□□□□ -0.38
GGA3-222ENST00000621217 SENP3-EIF4A1A0A087X0R7 540 aa12.66□□□□□ -0.38
GGA3-222ENST00000621217 TSPY4P0CV99 314 aa12.65□□□□□ -0.38
GGA3-222ENST00000621217 TSPY10P0CW01 314 aa12.65□□□□□ -0.38
GGA3-222ENST00000621217 PLPPR3Q6T4P5 718 aa12.65□□□□□ -0.38
GGA3-222ENST00000621217 FOXD1Q16676 465 aa12.64□□□□□ -0.39
GGA3-222ENST00000621217 FKBP8Q14318 412 aa12.64□□□□□ -0.39
GGA3-222ENST00000621217 NPM1P06748 294 aaKnown RBP eCLIP12.63□□□□□ -0.39
GGA3-222ENST00000621217 FHAD1B1AJZ9 1412 aa12.63□□□□□ -0.39
GGA3-222ENST00000621217 RAB3GAP2Q9H2M9 1393 aa12.62□□□□□ -0.39
GGA3-222ENST00000621217 HMGXB3Q12766 1538 aa12.62□□□□□ -0.39
GGA3-222ENST00000621217 CHGAP10645 457 aaKnown RBP12.61□□□□□ -0.39
GGA3-222ENST00000621217 KIF21BO75037 1637 aa12.61□□□□□ -0.39
GGA3-222ENST00000621217 JPH4Q96JJ6 628 aa12.6□□□□□ -0.39
GGA3-222ENST00000621217 GAPVD1Q14C86 1478 aa12.6□□□□□ -0.39
GGA3-222ENST00000621217 DHX57Q6P158 1386 aaKnown RBP12.59□□□□□ -0.39
GGA3-222ENST00000621217 IRX6P78412 446 aaPredicted RBP12.59□□□□□ -0.39
GGA3-222ENST00000621217 RGL3Q3MIN7 710 aa12.59□□□□□ -0.39
GGA3-222ENST00000621217 HNRNPUQ00839 825 aaKnown RBP eCLIP12.58□□□□□ -0.4
GGA3-222ENST00000621217 ARAP1Q96P48 1450 aa12.57□□□□□ -0.4
GGA3-222ENST00000621217 FAM9BQ8IZU0 186 aa12.57□□□□□ -0.4
GGA3-222ENST00000621217 POLA1P09884 1462 aaPredicted RBP12.56□□□□□ -0.4
GGA3-222ENST00000621217 TOP2BQ02880 1626 aa12.56□□□□□ -0.4
GGA3-222ENST00000621217 TOPBP1Q92547 1522 aa12.55□□□□□ -0.4
GGA3-222ENST00000621217 DAXXQ9UER7 740 aaPredicted RBP12.55□□□□□ -0.4
GGA3-222ENST00000621217 PEG3Q9GZU2 1588 aa12.54□□□□□ -0.4
GGA3-222ENST00000621217 CLSPNQ9HAW4 1339 aa12.53□□□□□ -0.4
GGA3-222ENST00000621217 SETD5Q9C0A6 1442 aa12.53□□□□□ -0.4
GGA3-222ENST00000621217 FMN1Q68DA7 1419 aa12.51□□□□□ -0.41
GGA3-222ENST00000621217 PRXQ9BXM0 1461 aa12.51□□□□□ -0.41
GGA3-222ENST00000621217 ARHGAP35Q9NRY4 1499 aa12.51□□□□□ -0.41
GGA3-222ENST00000621217 SALL2Q9Y467 1007 aaPredicted RBP12.5□□□□□ -0.41
GGA3-222ENST00000621217 ZNF644Q9H582 1327 aaPredicted RBP12.49□□□□□ -0.41
GGA3-222ENST00000621217 HNRNPMP52272 730 aaKnown RBP eCLIP12.47□□□□□ -0.41
GGA3-222ENST00000621217 PHLDB1Q86UU1 1377 aa12.47□□□□□ -0.41
GGA3-222ENST00000621217 SUPT16HQ9Y5B9 1047 aaKnown RBP12.45□□□□□ -0.42
GGA3-222ENST00000621217 CARMIL2Q6F5E8 1435 aa12.44□□□□□ -0.42
GGA3-222ENST00000621217 EIF4G2P78344 907 aaKnown RBP eCLIP12.44□□□□□ -0.42
GGA3-222ENST00000621217 MRS2Q9HD23 443 aa12.43□□□□□ -0.42
GGA3-222ENST00000621217 URB2Q14146 1524 aaKnown RBP12.41□□□□□ -0.42
GGA3-222ENST00000621217 PPP1R15AO75807 674 aaPredicted RBP12.41□□□□□ -0.42
GGA3-222ENST00000621217 ANP32EQ9BTT0 268 aa12.4□□□□□ -0.42
GGA3-222ENST00000621217 PKD2Q13563 968 aa12.39□□□□□ -0.43
GGA3-222ENST00000621217 BCL11AQ9H165 835 aa12.39□□□□□ -0.43
GGA3-222ENST00000621217 DNMBPQ6XZF7 1577 aa12.38□□□□□ -0.43
GGA3-222ENST00000621217 ZNF608Q9ULD9 1512 aaPredicted RBP12.38□□□□□ -0.43
GGA3-222ENST00000621217 MPHOSPH9Q99550 1183 aa12.38□□□□□ -0.43
GGA3-222ENST00000621217 STAG3Q9UJ98 1225 aa12.38□□□□□ -0.43
GGA3-222ENST00000621217 MRC2Q9UBG0 1479 aa12.38□□□□□ -0.43
GGA3-222ENST00000621217 HSPA5P11021 654 aaKnown RBP12.37□□□□□ -0.43
GGA3-222ENST00000621217 ERICH3Q5RHP9 1530 aa12.37□□□□□ -0.43
GGA3-222ENST00000621217 EIF5BO60841 1220 aaKnown RBP12.36□□□□□ -0.43
GGA3-222ENST00000621217 PTPRGP23470 1445 aa12.36□□□□□ -0.43
GGA3-222ENST00000621217 DCAF11Q8TEB1 546 aa12.36□□□□□ -0.43
GGA3-222ENST00000621217 GRIN2BQ13224 1484 aa12.35□□□□□ -0.43
GGA3-222ENST00000621217 ESF1Q9H501 851 aaKnown RBP12.35□□□□□ -0.43
GGA3-222ENST00000621217 CYB5RLQ6IPT4 315 aa12.34□□□□□ -0.43
GGA3-222ENST00000621217 LRRC9Q6ZRR7 1453 aa12.34□□□□□ -0.43
GGA3-222ENST00000621217 MLECQ14165 292 aa12.34□□□□□ -0.43
GGA3-222ENST00000621217 GGT6Q6P531 493 aa12.33□□□□□ -0.43
GGA3-222ENST00000621217 SNAPC4Q5SXM2 1469 aa12.33□□□□□ -0.44
GGA3-222ENST00000621217 L3MBTL2Q969R5 705 aa12.33□□□□□ -0.44
GGA3-222ENST00000621217 ABCA10Q8WWZ4 1543 aa12.32□□□□□ -0.44
GGA3-222ENST00000621217 CARD11Q9BXL7 1154 aa12.32□□□□□ -0.44
GGA3-222ENST00000621217 PRDM2Q13029 1718 aa12.32□□□□□ -0.44
GGA3-222ENST00000621217 RRBP1Q9P2E9 1410 aaKnown RBP12.32□□□□□ -0.44
GGA3-222ENST00000621217 LAMC3Q9Y6N6 1575 aa12.31□□□□□ -0.44
GGA3-222ENST00000621217 NUP155O75694 1391 aa12.31□□□□□ -0.44
GGA3-222ENST00000621217 TMC1Q8TDI8 760 aa12.31□□□□□ -0.44
GGA3-222ENST00000621217 GLIPR1L2Q4G1C9 344 aa12.29□□□□□ -0.44
GGA3-222ENST00000621217 CCDC18Q5T9S5 1454 aa12.28□□□□□ -0.44
GGA3-222ENST00000621217 FGD6Q6ZV73 1430 aa12.28□□□□□ -0.44
GGA3-222ENST00000621217 BIVM-ERCC5R4GMW8 1640 aa12.28□□□□□ -0.44
GGA3-222ENST00000621217 EFCAB2Q5VUJ9 269 aa12.27□□□□□ -0.45
GGA3-222ENST00000621217 CASKIN1Q8WXD9 1431 aa12.27□□□□□ -0.45
GGA3-222ENST00000621217 ARID4BQ4LE39 1312 aaPredicted RBP12.27□□□□□ -0.45
GGA3-222ENST00000621217 NCOA2Q15596 1464 aa12.26□□□□□ -0.45
GGA3-222ENST00000621217 IFT140Q96RY7 1462 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms