RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 CUL7Q14999 1698 aa27.41■■□□□ 1.98
BRCA1-228ENST00000618469 JPH4Q96JJ6 628 aa27.36■■□□□ 1.97
BRCA1-228ENST00000618469 FAM69CQ0P6D2 419 aa27.35■■□□□ 1.97
BRCA1-228ENST00000618469 IGF1RP08069 1367 aa27.33■■□□□ 1.97
BRCA1-228ENST00000618469 RUSC2Q8N2Y8 1516 aa27.28■■□□□ 1.96
BRCA1-228ENST00000618469 NPM1P06748 294 aaKnown RBP eCLIP27.25■■□□□ 1.95
BRCA1-228ENST00000618469 ABCC10Q5T3U5 1492 aa27.23■■□□□ 1.95
BRCA1-228ENST00000618469 TSPOAP1O95153 1857 aa27.21■■□□□ 1.95
BRCA1-228ENST00000618469 CARMIL1Q5VZK9 1371 aa27.19■■□□□ 1.94
BRCA1-228ENST00000618469 ADCY10Q96PN6 1610 aa27.19■■□□□ 1.94
BRCA1-228ENST00000618469 DIP2BQ9P265 1576 aa27.18■■□□□ 1.94
BRCA1-228ENST00000618469 KDM4FA0A1W2PPD8 638 aa27.15■■□□□ 1.94
BRCA1-228ENST00000618469 MAPKBP1O60336 1514 aa27.13■■□□□ 1.93
BRCA1-228ENST00000618469 TTBK1Q5TCY1 1321 aaPredicted RBP27.13■■□□□ 1.93
BRCA1-228ENST00000618469 KDM6BO15054 1643 aa27.12■■□□□ 1.93
BRCA1-228ENST00000618469 KIAA0586Q9BVV6 1533 aa27.09■■□□□ 1.93
BRCA1-228ENST00000618469 RAPGEF2Q9Y4G8 1499 aa27.06■■□□□ 1.92
BRCA1-228ENST00000618469 IQGAP2Q13576 1575 aa27■■□□□ 1.91
BRCA1-228ENST00000618469 CTTNBP2Q8WZ74 1663 aa26.92■■□□□ 1.9
BRCA1-228ENST00000618469 ILDR1Q86SU0 546 aaPredicted RBP26.92■■□□□ 1.9
BRCA1-228ENST00000618469 PRXQ9BXM0 1461 aa26.92■■□□□ 1.9
BRCA1-228ENST00000618469 PTPRGP23470 1445 aa26.9■■□□□ 1.9
BRCA1-228ENST00000618469 EEA1Q15075 1411 aa26.86■■□□□ 1.89
BRCA1-228ENST00000618469 PPRC1Q5VV67 1664 aaKnown RBP26.82■■□□□ 1.88
BRCA1-228ENST00000618469 CHIC1Q5VXU3 224 aa26.82■■□□□ 1.88
BRCA1-228ENST00000618469 CARMIL2Q6F5E8 1435 aa26.82■■□□□ 1.88
BRCA1-228ENST00000618469 ASXL2Q76L83 1435 aa26.81■■□□□ 1.88
BRCA1-228ENST00000618469 UGGT2Q9NYU1 1516 aa26.8■■□□□ 1.88
BRCA1-228ENST00000618469 ABCC2Q92887 1545 aa26.79■■□□□ 1.88
BRCA1-228ENST00000618469 CSRNP3Q8WYN3 585 aa26.78■■□□□ 1.88
BRCA1-228ENST00000618469 DISP1Q96F81 1524 aa26.77■■□□□ 1.88
BRCA1-228ENST00000618469 TNIKQ9UKE5 1360 aa26.77■■□□□ 1.88
BRCA1-228ENST00000618469 KIAA0556O60303 1618 aa26.76■■□□□ 1.87
BRCA1-228ENST00000618469 ADGRL1O94910 1474 aa26.76■■□□□ 1.87
BRCA1-228ENST00000618469 FAM9AQ8IZU1 332 aaPredicted RBP26.72■■□□□ 1.87
BRCA1-228ENST00000618469 PLB1Q6P1J6 1458 aa26.71■■□□□ 1.87
BRCA1-228ENST00000618469 COL17A1Q9UMD9 1497 aaPredicted RBP26.71■■□□□ 1.87
BRCA1-228ENST00000618469 GLI2P10070 1586 aa26.69■■□□□ 1.86
BRCA1-228ENST00000618469 KIF21BO75037 1637 aa26.68■■□□□ 1.86
BRCA1-228ENST00000618469 UACAQ9BZF9 1416 aa26.65■■□□□ 1.86
BRCA1-228ENST00000618469 GOLGA3Q08378 1498 aa26.63■■□□□ 1.85
BRCA1-228ENST00000618469 UHRF1BP1LA0JNW5 1464 aa26.62■■□□□ 1.85
BRCA1-228ENST00000618469 EPRSP07814 1512 aaKnown RBP26.61■■□□□ 1.85
BRCA1-228ENST00000618469 MAP3K4Q9Y6R4 1608 aa26.6■■□□□ 1.85
BRCA1-228ENST00000618469 ZCCHC11Q5TAX3 1644 aaKnown RBP26.58■■□□□ 1.85
BRCA1-228ENST00000618469 HECW2Q9P2P5 1572 aa26.58■■□□□ 1.85
BRCA1-228ENST00000618469 KDM5BQ9UGL1 1544 aa26.55■■□□□ 1.84
BRCA1-228ENST00000618469 SAMD9Q5K651 1589 aa26.52■■□□□ 1.84
BRCA1-228ENST00000618469 TEX14Q8IWB6 1497 aa26.49■■□□□ 1.83
BRCA1-228ENST00000618469 KCNH8Q96L42 1107 aa26.45■■□□□ 1.82
BRCA1-228ENST00000618469 ABCA8O94911 1581 aa26.43■■□□□ 1.82
BRCA1-228ENST00000618469 EHMT2Q96KQ7 1210 aa26.42■■□□□ 1.82
BRCA1-228ENST00000618469 WDR7Q9Y4E6 1490 aa26.42■■□□□ 1.82
BRCA1-228ENST00000618469 RANGAP1P46060 587 aaPredicted RBP26.39■■□□□ 1.82
BRCA1-228ENST00000618469 P3H3Q8IVL6 736 aa26.39■■□□□ 1.82
BRCA1-228ENST00000618469 EFCAB5A4FU69 1503 aa26.37■■□□□ 1.81
BRCA1-228ENST00000618469 CD109Q6YHK3 1445 aa26.35■■□□□ 1.81
BRCA1-228ENST00000618469 FHOD3Q2V2M9 1422 aa26.33■■□□□ 1.81
BRCA1-228ENST00000618469 UBTFP17480 764 aaKnown RBP26.33■■□□□ 1.81
BRCA1-228ENST00000618469 ARID3CA6NKF2 412 aa26.32■■□□□ 1.8
BRCA1-228ENST00000618469 RAPGEF6Q8TEU7 1601 aa26.3■■□□□ 1.8
BRCA1-228ENST00000618469 CFAP43Q8NDM7 1665 aa26.29■■□□□ 1.8
BRCA1-228ENST00000618469 MAGI3Q5TCQ9 1506 aa26.26■■□□□ 1.79
BRCA1-228ENST00000618469 ARHGAP35Q9NRY4 1499 aa26.17■■□□□ 1.78
BRCA1-228ENST00000618469 NUP153P49790 1475 aaKnown RBP26.17■■□□□ 1.78
BRCA1-228ENST00000618469 ATP10BO94823 1461 aa26.16■■□□□ 1.78
BRCA1-228ENST00000618469 RAPGEF3O95398 923 aa26.1■■□□□ 1.77
BRCA1-228ENST00000618469 FBXO41Q8TF61 875 aa26.1■■□□□ 1.77
BRCA1-228ENST00000618469 ARAP3Q8WWN8 1544 aa26.08■■□□□ 1.77
BRCA1-228ENST00000618469 FMN1Q68DA7 1419 aa26.07■■□□□ 1.76
BRCA1-228ENST00000618469 PTPRMP28827 1452 aa26.06■■□□□ 1.76
BRCA1-228ENST00000618469 HECW1Q76N89 1606 aa26.06■■□□□ 1.76
BRCA1-228ENST00000618469 ADAMTSL3P82987 1691 aa26.05■■□□□ 1.76
BRCA1-228ENST00000618469 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.03■■□□□ 1.76
BRCA1-228ENST00000618469 HNRNPUL2Q1KMD3 747 aaKnown RBP26.03■■□□□ 1.76
BRCA1-228ENST00000618469 ARID4BQ4LE39 1312 aaPredicted RBP26.02■■□□□ 1.76
BRCA1-228ENST00000618469 CDK13Q14004 1512 aaKnown RBP26■■□□□ 1.75
BRCA1-228ENST00000618469 ABCA9Q8IUA7 1624 aa25.99■■□□□ 1.75
BRCA1-228ENST00000618469 PLPPR3Q6T4P5 718 aa25.98■■□□□ 1.75
BRCA1-228ENST00000618469 CLIP1P30622 1438 aa25.97■■□□□ 1.75
BRCA1-228ENST00000618469 MADDQ8WXG6 1647 aa25.96■■□□□ 1.75
BRCA1-228ENST00000618469 PCF11O94913 1555 aaKnown RBP25.96■■□□□ 1.75
BRCA1-228ENST00000618469 BCORL1Q5H9F3 1711 aa25.95■■□□□ 1.74
BRCA1-228ENST00000618469 FRMPD1Q5SYB0 1578 aa25.93■■□□□ 1.74
BRCA1-228ENST00000618469 LRRIQ1Q96JM4 1722 aa25.91■■□□□ 1.74
BRCA1-228ENST00000618469 ATP1B4Q9UN42 357 aaPredicted RBP25.9■■□□□ 1.74
BRCA1-228ENST00000618469 RIMS1Q86UR5 1692 aaKnown RBP25.89■■□□□ 1.73
BRCA1-228ENST00000618469 PHLDB1Q86UU1 1377 aa25.88■■□□□ 1.73
BRCA1-228ENST00000618469 HSPA2P54652 639 aa25.88■■□□□ 1.73
BRCA1-228ENST00000618469 NEO1Q92859 1461 aa25.87■■□□□ 1.73
BRCA1-228ENST00000618469 LMTK3Q96Q04 1460 aa25.87■■□□□ 1.73
BRCA1-228ENST00000618469 PLEKHD1A6NEE1 506 aa25.86■■□□□ 1.73
BRCA1-228ENST00000618469 CASKIN1Q8WXD9 1431 aa25.85■■□□□ 1.73
BRCA1-228ENST00000618469 CEP162Q5TB80 1403 aa25.84■■□□□ 1.73
BRCA1-228ENST00000618469 TTC37Q6PGP7 1564 aa25.84■■□□□ 1.73
BRCA1-228ENST00000618469 FYCO1Q9BQS8 1478 aa25.83■■□□□ 1.73
BRCA1-228ENST00000618469 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.82■■□□□ 1.72
BRCA1-228ENST00000618469 CCDC18Q5T9S5 1454 aa25.8■■□□□ 1.72
BRCA1-228ENST00000618469 RICTORQ6R327 1708 aa25.77■■□□□ 1.72
BRCA1-228ENST00000618469 ARHGEF40Q8TER5 1519 aa25.77■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms