RNA–Protein interactions for RNA: ENST00000616407.1

PPP4R3B-206, Transcript of protein phosphatase 4 regulatory subunit 3B, humanhuman

TSL 1 (best) BASIC

Gene PPP4R3B, Length 4,385 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R3B-206ENST00000616407 CLSPNQ9HAW4 1339 aa18.44■□□□□ 0.54
PPP4R3B-206ENST00000616407 SCAF1Q9H7N4 1312 aaKnown RBP18.43■□□□□ 0.54
PPP4R3B-206ENST00000616407 BCANQ96GW7 911 aa18.41■□□□□ 0.54
PPP4R3B-206ENST00000616407 IGF1RP08069 1367 aa18.41■□□□□ 0.54
PPP4R3B-206ENST00000616407 ERICH6Q7L0X2 663 aa18.4■□□□□ 0.54
PPP4R3B-206ENST00000616407 ERCC6Q03468 1493 aa18.39■□□□□ 0.54
PPP4R3B-206ENST00000616407 CFTRP13569 1480 aa18.36■□□□□ 0.53
PPP4R3B-206ENST00000616407 FGD5Q6ZNL6 1462 aa18.36■□□□□ 0.53
PPP4R3B-206ENST00000616407 TSPY4P0CV99 314 aa18.36■□□□□ 0.53
PPP4R3B-206ENST00000616407 TSPY10P0CW01 314 aa18.36■□□□□ 0.53
PPP4R3B-206ENST00000616407 FHOD3Q2V2M9 1422 aa18.36■□□□□ 0.53
PPP4R3B-206ENST00000616407 PLEKHD1A6NEE1 506 aa18.34■□□□□ 0.53
PPP4R3B-206ENST00000616407 UNC13AQ9UPW8 1703 aa18.34■□□□□ 0.53
PPP4R3B-206ENST00000616407 SLC4A1APQ9BWU0 796 aaKnown RBP18.33■□□□□ 0.52
PPP4R3B-206ENST00000616407 CFDP1Q9UEE9 299 aaPredicted RBP18.32■□□□□ 0.52
PPP4R3B-206ENST00000616407 SETD5Q9C0A6 1442 aa18.3■□□□□ 0.52
PPP4R3B-206ENST00000616407 RAD54L2Q9Y4B4 1467 aa18.3■□□□□ 0.52
PPP4R3B-206ENST00000616407 FMN1Q68DA7 1419 aa18.29■□□□□ 0.52
PPP4R3B-206ENST00000616407 ARHGAP35Q9NRY4 1499 aa18.29■□□□□ 0.52
PPP4R3B-206ENST00000616407 KIF21BO75037 1637 aa18.29■□□□□ 0.52
PPP4R3B-206ENST00000616407 RAB3GAP2Q9H2M9 1393 aa18.29■□□□□ 0.52
PPP4R3B-206ENST00000616407 HMGXB3Q12766 1538 aa18.29■□□□□ 0.52
PPP4R3B-206ENST00000616407 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.28■□□□□ 0.522e-8■■■□□ 14.7
PPP4R3B-206ENST00000616407 TOP2BQ02880 1626 aa18.25■□□□□ 0.51
PPP4R3B-206ENST00000616407 PEG3Q9GZU2 1588 aa18.24■□□□□ 0.51
PPP4R3B-206ENST00000616407 KCNH8Q96L42 1107 aa18.24■□□□□ 0.51
PPP4R3B-206ENST00000616407 CUX1P39880 1505 aa18.24■□□□□ 0.51
PPP4R3B-206ENST00000616407 KDM2AQ9Y2K7 1162 aa18.22■□□□□ 0.51
PPP4R3B-206ENST00000616407 PRXQ9BXM0 1461 aa18.22■□□□□ 0.51
PPP4R3B-206ENST00000616407 EIF4G2P78344 907 aaKnown RBP eCLIP18.22■□□□□ 0.51
PPP4R3B-206ENST00000616407 HNRNPUQ00839 825 aaKnown RBP eCLIP18.2■□□□□ 0.5
PPP4R3B-206ENST00000616407 ARAP1Q96P48 1450 aa18.18■□□□□ 0.5
PPP4R3B-206ENST00000616407 NESP48681 1621 aa18.18■□□□□ 0.5
PPP4R3B-206ENST00000616407 DHX57Q6P158 1386 aaKnown RBP18.18■□□□□ 0.5
PPP4R3B-206ENST00000616407 ERICH3Q5RHP9 1530 aa18.17■□□□□ 0.5
PPP4R3B-206ENST00000616407 CC2D2AQ9P2K1 1620 aa18.16■□□□□ 0.5
PPP4R3B-206ENST00000616407 FAM9BQ8IZU0 186 aa18.16■□□□□ 0.5
PPP4R3B-206ENST00000616407 FKBP8Q14318 412 aa18.15■□□□□ 0.5
PPP4R3B-206ENST00000616407 TIMELESSQ9UNS1 1208 aa18.14■□□□□ 0.49
PPP4R3B-206ENST00000616407 GAPVD1Q14C86 1478 aa18.13■□□□□ 0.49
PPP4R3B-206ENST00000616407 NPM1P06748 294 aaKnown RBP eCLIP18.13■□□□□ 0.49
PPP4R3B-206ENST00000616407 FOXD1Q16676 465 aa18.08■□□□□ 0.48
PPP4R3B-206ENST00000616407 MRS2Q9HD23 443 aa18.07■□□□□ 0.48
PPP4R3B-206ENST00000616407 RGL3Q3MIN7 710 aa18.06■□□□□ 0.48
PPP4R3B-206ENST00000616407 DNAJC5BQ9UF47 199 aa18.05■□□□□ 0.48
PPP4R3B-206ENST00000616407 CHGAP10645 457 aaKnown RBP18.05■□□□□ 0.48
PPP4R3B-206ENST00000616407 PHLDB1Q86UU1 1377 aa18.04■□□□□ 0.48
PPP4R3B-206ENST00000616407 PPP1R15AO75807 674 aaPredicted RBP18.04■□□□□ 0.48
PPP4R3B-206ENST00000616407 CARMIL2Q6F5E8 1435 aa18.04■□□□□ 0.48
PPP4R3B-206ENST00000616407 JPH4Q96JJ6 628 aa18.03■□□□□ 0.48
PPP4R3B-206ENST00000616407 TOPBP1Q92547 1522 aa18.03■□□□□ 0.48
PPP4R3B-206ENST00000616407 AQRO60306 1485 aaKnown RBP eCLIP18.02■□□□□ 0.482e-7■■■□□ 16.7
PPP4R3B-206ENST00000616407 POLA1P09884 1462 aaPredicted RBP18.02■□□□□ 0.48
PPP4R3B-206ENST00000616407 MPHOSPH9Q99550 1183 aa18.01■□□□□ 0.47
PPP4R3B-206ENST00000616407 LRRC9Q6ZRR7 1453 aa18■□□□□ 0.47
PPP4R3B-206ENST00000616407 TMC1Q8TDI8 760 aa18■□□□□ 0.47
PPP4R3B-206ENST00000616407 SALL2Q9Y467 1007 aaPredicted RBP17.95■□□□□ 0.46
PPP4R3B-206ENST00000616407 CARD11Q9BXL7 1154 aa17.95■□□□□ 0.46
PPP4R3B-206ENST00000616407 RRBP1Q9P2E9 1410 aaKnown RBP17.94■□□□□ 0.46
PPP4R3B-206ENST00000616407 PKD2Q13563 968 aa17.94■□□□□ 0.46
PPP4R3B-206ENST00000616407 HSPA5P11021 654 aaKnown RBP17.93■□□□□ 0.46
PPP4R3B-206ENST00000616407 CASKIN1Q8WXD9 1431 aa17.93■□□□□ 0.46
PPP4R3B-206ENST00000616407 MYT1Q01538 1121 aa17.93■□□□□ 0.46
PPP4R3B-206ENST00000616407 CCDC18Q5T9S5 1454 aa17.92■□□□□ 0.46
PPP4R3B-206ENST00000616407 FGD6Q6ZV73 1430 aa17.91■□□□□ 0.46
PPP4R3B-206ENST00000616407 IRX6P78412 446 aaPredicted RBP17.9■□□□□ 0.46
PPP4R3B-206ENST00000616407 DNMBPQ6XZF7 1577 aa17.9■□□□□ 0.46
PPP4R3B-206ENST00000616407 L3MBTL2Q969R5 705 aa17.89■□□□□ 0.45
PPP4R3B-206ENST00000616407 DCAF11Q8TEB1 546 aa17.88■□□□□ 0.45
PPP4R3B-206ENST00000616407 BIVM-ERCC5R4GMW8 1640 aa17.87■□□□□ 0.45
PPP4R3B-206ENST00000616407 SENP3-EIF4A1A0A087X0R7 540 aa17.86■□□□□ 0.45
PPP4R3B-206ENST00000616407 HNRNPMP52272 730 aaKnown RBP eCLIP17.86■□□□□ 0.45
PPP4R3B-206ENST00000616407 ABCA10Q8WWZ4 1543 aa17.85■□□□□ 0.45
PPP4R3B-206ENST00000616407 MYOM3Q5VTT5 1437 aa17.85■□□□□ 0.45
PPP4R3B-206ENST00000616407 NUP155O75694 1391 aa17.84■□□□□ 0.45
PPP4R3B-206ENST00000616407 ANKRD30AQ9BXX3 1397 aa17.84■□□□□ 0.45
PPP4R3B-206ENST00000616407 FYCO1Q9BQS8 1478 aa17.84■□□□□ 0.45
PPP4R3B-206ENST00000616407 GRIN2BQ13224 1484 aa17.83■□□□□ 0.45
PPP4R3B-206ENST00000616407 DAXXQ9UER7 740 aaPredicted RBP17.83■□□□□ 0.45
PPP4R3B-206ENST00000616407 ZNF644Q9H582 1327 aaPredicted RBP17.83■□□□□ 0.44
PPP4R3B-206ENST00000616407 CCER2I3L3R5 266 aa17.82■□□□□ 0.44
PPP4R3B-206ENST00000616407 NCOA2Q15596 1464 aa17.81■□□□□ 0.44
PPP4R3B-206ENST00000616407 TIAM1Q13009 1591 aa17.8■□□□□ 0.44
PPP4R3B-206ENST00000616407 STAG3Q9UJ98 1225 aa17.8■□□□□ 0.44
PPP4R3B-206ENST00000616407 SUPT16HQ9Y5B9 1047 aaKnown RBP17.79■□□□□ 0.44
PPP4R3B-206ENST00000616407 EFCAB5A4FU69 1503 aa17.79■□□□□ 0.44
PPP4R3B-206ENST00000616407 MRC2Q9UBG0 1479 aa17.79■□□□□ 0.44
PPP4R3B-206ENST00000616407 SENP3Q9H4L4 574 aaPredicted RBP17.77■□□□□ 0.43
PPP4R3B-206ENST00000616407 PTPRGP23470 1445 aa17.76■□□□□ 0.43
PPP4R3B-206ENST00000616407 LAMC3Q9Y6N6 1575 aa17.76■□□□□ 0.43
PPP4R3B-206ENST00000616407 ESF1Q9H501 851 aaKnown RBP17.75■□□□□ 0.43
PPP4R3B-206ENST00000616407 EFCAB2Q5VUJ9 269 aa17.75■□□□□ 0.43
PPP4R3B-206ENST00000616407 URB2Q14146 1524 aaKnown RBP17.73■□□□□ 0.43
PPP4R3B-206ENST00000616407 UACAQ9BZF9 1416 aa17.72■□□□□ 0.43
PPP4R3B-206ENST00000616407 CANXP27824 592 aaKnown RBP17.71■□□□□ 0.43
PPP4R3B-206ENST00000616407 WDR43Q15061 677 aaKnown RBP eCLIP17.71■□□□□ 0.43
PPP4R3B-206ENST00000616407 IFT140Q96RY7 1462 aa17.7■□□□□ 0.42
PPP4R3B-206ENST00000616407 CCDC136Q96JN2 1154 aa17.7■□□□□ 0.42
PPP4R3B-206ENST00000616407 RSPH4AQ5TD94 716 aa17.68■□□□□ 0.42
PPP4R3B-206ENST00000616407 PCF11O94913 1555 aaKnown RBP17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms