RNA–Protein interactions for RNA: ENST00000613073.4

CNOT3-208, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

TSL 2

Gene CNOT3, Length 2,778 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-208ENST00000613073 P3H3Q8IVL6 736 aa24.7■■□□□ 1.54
CNOT3-208ENST00000613073 WDR97A6NE52 1622 aa24.64■■□□□ 1.54
CNOT3-208ENST00000613073 GAPVD1Q14C86 1478 aa24.61■■□□□ 1.53
CNOT3-208ENST00000613073 CUL7Q14999 1698 aa24.6■■□□□ 1.53
CNOT3-208ENST00000613073 ABCA5Q8WWZ7 1642 aa24.57■■□□□ 1.52
CNOT3-208ENST00000613073 ATP1B4Q9UN42 357 aaPredicted RBP24.55■■□□□ 1.52
CNOT3-208ENST00000613073 YTHDC1Q96MU7 727 aaKnown RBP24.55■■□□□ 1.52
CNOT3-208ENST00000613073 FHOD3Q2V2M9 1422 aa24.52■■□□□ 1.52
CNOT3-208ENST00000613073 TARBP1Q13395 1621 aaKnown RBP24.51■■□□□ 1.51
CNOT3-208ENST00000613073 MRC2Q9UBG0 1479 aa24.5■■□□□ 1.51
CNOT3-208ENST00000613073 CTTNBP2Q8WZ74 1663 aa24.47■■□□□ 1.51
CNOT3-208ENST00000613073 AQRO60306 1485 aaKnown RBP eCLIP24.46■■□□□ 1.517e-9■■■■■ 27
CNOT3-208ENST00000613073 FHAD1B1AJZ9 1412 aa24.45■■□□□ 1.5
CNOT3-208ENST00000613073 TIAM1Q13009 1591 aa24.43■■□□□ 1.5
CNOT3-208ENST00000613073 PCF11O94913 1555 aaKnown RBP24.41■■□□□ 1.5
CNOT3-208ENST00000613073 ITGAEP38570 1179 aa24.39■■□□□ 1.5
CNOT3-208ENST00000613073 RRBP1Q9P2E9 1410 aaKnown RBP24.39■■□□□ 1.49
CNOT3-208ENST00000613073 EFCAB5A4FU69 1503 aa24.39■■□□□ 1.49
CNOT3-208ENST00000613073 CCNB3Q8WWL7 1395 aa24.37■■□□□ 1.49
CNOT3-208ENST00000613073 LRRC9Q6ZRR7 1453 aa24.36■■□□□ 1.49
CNOT3-208ENST00000613073 MAP3K1Q13233 1512 aa24.35■■□□□ 1.49
CNOT3-208ENST00000613073 PBRM1Q86U86 1689 aa24.34■■□□□ 1.49
CNOT3-208ENST00000613073 ERCC6Q03468 1493 aa24.34■■□□□ 1.49
CNOT3-208ENST00000613073 ZNF608Q9ULD9 1512 aaPredicted RBP24.33■■□□□ 1.49
CNOT3-208ENST00000613073 WDR62O43379 1518 aa24.3■■□□□ 1.48
CNOT3-208ENST00000613073 CASKIN1Q8WXD9 1431 aa24.29■■□□□ 1.48
CNOT3-208ENST00000613073 FYCO1Q9BQS8 1478 aa24.29■■□□□ 1.48
CNOT3-208ENST00000613073 PHLDB1Q86UU1 1377 aa24.28■■□□□ 1.48
CNOT3-208ENST00000613073 FMN1Q68DA7 1419 aa24.27■■□□□ 1.48
CNOT3-208ENST00000613073 IFT140Q96RY7 1462 aa24.27■■□□□ 1.48
CNOT3-208ENST00000613073 GRIN2BQ13224 1484 aa24.26■■□□□ 1.47
CNOT3-208ENST00000613073 CFAP43Q8NDM7 1665 aa24.26■■□□□ 1.47
CNOT3-208ENST00000613073 SAMD9Q5K651 1589 aa24.24■■□□□ 1.47
CNOT3-208ENST00000613073 ADAMTS12P58397 1594 aa24.23■■□□□ 1.47
CNOT3-208ENST00000613073 FAM50AQ14320 339 aaKnown RBP24.22■■□□□ 1.47
CNOT3-208ENST00000613073 SNAPC4Q5SXM2 1469 aa24.2■■□□□ 1.47
CNOT3-208ENST00000613073 DHX57Q6P158 1386 aaKnown RBP24.17■■□□□ 1.46
CNOT3-208ENST00000613073 IQGAP2Q13576 1575 aa24.14■■□□□ 1.45
CNOT3-208ENST00000613073 ZNF316A6NFI3 1004 aaPredicted RBP24.13■■□□□ 1.45
CNOT3-208ENST00000613073 MTUS2Q5JR59 1369 aa24.12■■□□□ 1.45
CNOT3-208ENST00000613073 EIF4G3O43432 1585 aaKnown RBP24.12■■□□□ 1.45
CNOT3-208ENST00000613073 THOC2Q8NI27 1593 aaKnown RBP24.12■■□□□ 1.45
CNOT3-208ENST00000613073 MIER1Q8N108 512 aa24.1■■□□□ 1.45
CNOT3-208ENST00000613073 LRRIQ1Q96JM4 1722 aa24.09■■□□□ 1.45
CNOT3-208ENST00000613073 ARID3CA6NKF2 412 aa24.06■■□□□ 1.44
CNOT3-208ENST00000613073 RAB3GAP2Q9H2M9 1393 aa24.06■■□□□ 1.44
CNOT3-208ENST00000613073 FBLN2P98095 1184 aa24.06■■□□□ 1.44
CNOT3-208ENST00000613073 CHMP7Q8WUX9 453 aaPredicted RBP24.02■■□□□ 1.44
CNOT3-208ENST00000613073 GRIN2AQ12879 1464 aa24.01■■□□□ 1.43
CNOT3-208ENST00000613073 CLSPNQ9HAW4 1339 aa24.01■■□□□ 1.43
CNOT3-208ENST00000613073 SETD5Q9C0A6 1442 aa23.98■■□□□ 1.43
CNOT3-208ENST00000613073 KIAA0586Q9BVV6 1533 aa23.97■■□□□ 1.43
CNOT3-208ENST00000613073 FGD6Q6ZV73 1430 aa23.97■■□□□ 1.43
CNOT3-208ENST00000613073 UGGT2Q9NYU1 1516 aa23.96■■□□□ 1.43
CNOT3-208ENST00000613073 NCOA2Q15596 1464 aa23.96■■□□□ 1.43
CNOT3-208ENST00000613073 MAGI3Q5TCQ9 1506 aa23.93■■□□□ 1.42
CNOT3-208ENST00000613073 MAGI1Q96QZ7 1491 aaPredicted RBP23.93■■□□□ 1.42
CNOT3-208ENST00000613073 HECW1Q76N89 1606 aa23.91■■□□□ 1.42
CNOT3-208ENST00000613073 CDK13Q14004 1512 aaKnown RBP23.91■■□□□ 1.42
CNOT3-208ENST00000613073 CCDC18Q5T9S5 1454 aa23.91■■□□□ 1.42
CNOT3-208ENST00000613073 DISP1Q96F81 1524 aa23.9■■□□□ 1.42
CNOT3-208ENST00000613073 EPRSP07814 1512 aaKnown RBP23.9■■□□□ 1.42
CNOT3-208ENST00000613073 EHBP1L1Q8N3D4 1523 aa23.9■■□□□ 1.42
CNOT3-208ENST00000613073 SYNJ2O15056 1496 aa23.9■■□□□ 1.42
CNOT3-208ENST00000613073 SUPT6HQ7KZ85 1726 aaKnown RBP23.89■■□□□ 1.42
CNOT3-208ENST00000613073 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.88■■□□□ 1.41
CNOT3-208ENST00000613073 MYOM3Q5VTT5 1437 aa23.88■■□□□ 1.41
CNOT3-208ENST00000613073 KIAA0556O60303 1618 aa23.87■■□□□ 1.41
CNOT3-208ENST00000613073 CEP170Q5SW79 1584 aa23.86■■□□□ 1.41
CNOT3-208ENST00000613073 BCL11AQ9H165 835 aa23.85■■□□□ 1.41
CNOT3-208ENST00000613073 PTPRKQ15262 1439 aa23.82■■□□□ 1.4
CNOT3-208ENST00000613073 MAPKBP1O60336 1514 aa23.82■■□□□ 1.4
CNOT3-208ENST00000613073 JPH4Q96JJ6 628 aa23.79■■□□□ 1.4
CNOT3-208ENST00000613073 ARHGEF11O15085 1522 aa23.77■■□□□ 1.4
CNOT3-208ENST00000613073 PTPN23Q9H3S7 1636 aa23.76■■□□□ 1.39
CNOT3-208ENST00000613073 SIN3AQ96ST3 1273 aa23.76■■□□□ 1.39
CNOT3-208ENST00000613073 NUP153P49790 1475 aaKnown RBP23.75■■□□□ 1.39
CNOT3-208ENST00000613073 SUPT16HQ9Y5B9 1047 aaKnown RBP23.74■■□□□ 1.39
CNOT3-208ENST00000613073 ANP32EQ9BTT0 268 aa23.74■■□□□ 1.39
CNOT3-208ENST00000613073 CHIC2Q9UKJ5 165 aa23.74■■□□□ 1.39
CNOT3-208ENST00000613073 NUP160Q12769 1436 aa23.74■■□□□ 1.39
CNOT3-208ENST00000613073 RAPGEF6Q8TEU7 1601 aa23.72■■□□□ 1.39
CNOT3-208ENST00000613073 PLB1Q6P1J6 1458 aa23.71■■□□□ 1.39
CNOT3-208ENST00000613073 RRP7BPQ9NSQ0 103 aa23.69■■□□□ 1.38
CNOT3-208ENST00000613073 HFM1A2PYH4 1435 aa23.69■■□□□ 1.38
CNOT3-208ENST00000613073 CARMIL2Q6F5E8 1435 aa23.68■■□□□ 1.38
CNOT3-208ENST00000613073 TSHZ2Q9NRE2 1034 aa23.68■■□□□ 1.38
CNOT3-208ENST00000613073 NAIPQ13075 1403 aa23.66■■□□□ 1.38
CNOT3-208ENST00000613073 CDK11AQ9UQ88 783 aaPredicted RBP23.66■■□□□ 1.38
CNOT3-208ENST00000613073 TCOF1Q13428 1488 aaKnown RBP23.64■■□□□ 1.37
CNOT3-208ENST00000613073 PRG4Q92954 1404 aaPredicted RBP23.62■■□□□ 1.37
CNOT3-208ENST00000613073 MIA2Q96PC5 1412 aa23.61■■□□□ 1.37
CNOT3-208ENST00000613073 ZNF644Q9H582 1327 aaPredicted RBP23.6■■□□□ 1.37
CNOT3-208ENST00000613073 UACAQ9BZF9 1416 aa23.56■■□□□ 1.36
CNOT3-208ENST00000613073 TROQ12816 1431 aaPredicted RBP23.54■■□□□ 1.36
CNOT3-208ENST00000613073 TRIM52Q96A61 297 aa23.52■■□□□ 1.36
CNOT3-208ENST00000613073 ZNF777Q9ULD5 760 aaPredicted RBP23.5■■□□□ 1.35
CNOT3-208ENST00000613073 CHD1O14646 1710 aa23.5■■□□□ 1.35
CNOT3-208ENST00000613073 CFDP1Q9UEE9 299 aaPredicted RBP23.49■■□□□ 1.35
CNOT3-208ENST00000613073 KDM6BO15054 1643 aa23.48■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms