RNA–Protein interactions for RNA: ENST00000613073.4

CNOT3-208, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

TSL 2

Gene CNOT3, Length 2,778 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-208ENST00000613073 NISCHQ9Y2I1 1504 aa35.24■■■■□ 3.23
CNOT3-208ENST00000613073 CCDC180Q9P1Z9 1646 aa30.22■■■□□ 2.43
CNOT3-208ENST00000613073 ZCCHC6Q5VYS8 1495 aaKnown RBP29.68■■■□□ 2.34
CNOT3-208ENST00000613073 SHROOM4Q9ULL8 1493 aa29.66■■■□□ 2.34
CNOT3-208ENST00000613073 DCAF8L2P0C7V8 631 aa29.47■■■□□ 2.31
CNOT3-208ENST00000613073 DCAF1Q9Y4B6 1507 aa28.9■■■□□ 2.22
CNOT3-208ENST00000613073 SUPT5HO00267 1087 aaKnown RBP28.83■■■□□ 2.21
CNOT3-208ENST00000613073 ABCC9O60706 1549 aa28.53■■■□□ 2.16
CNOT3-208ENST00000613073 MYO15BQ96JP2 1530 aa28.28■■■□□ 2.12
CNOT3-208ENST00000613073 SCRIBQ14160 1630 aa28.26■■■□□ 2.11
CNOT3-208ENST00000613073 NACADO15069 1562 aa28.09■■■□□ 2.09
CNOT3-208ENST00000613073 RB1CC1Q8TDY2 1594 aa27.77■■■□□ 2.04
CNOT3-208ENST00000613073 CHIC1Q5VXU3 224 aa27.71■■■□□ 2.03
CNOT3-208ENST00000613073 RSF1Q96T23 1441 aaPredicted RBP27.67■■■□□ 2.02
CNOT3-208ENST00000613073 CECR2Q9BXF3 1484 aa27.54■■■□□ 2
CNOT3-208ENST00000613073 MROH2BQ7Z745 1585 aa27.38■■□□□ 1.97
CNOT3-208ENST00000613073 UNC13AQ9UPW8 1703 aa27.32■■□□□ 1.96
CNOT3-208ENST00000613073 WIZO95785 1651 aa27.2■■□□□ 1.94
CNOT3-208ENST00000613073 HRCP23327 699 aa27.19■■□□□ 1.94
CNOT3-208ENST00000613073 PABPN1Q86U42 306 aaKnown RBP eCLIP27.19■■□□□ 1.94
CNOT3-208ENST00000613073 BAZ1AQ9NRL2 1556 aaPredicted RBP27.11■■□□□ 1.93
CNOT3-208ENST00000613073 BICRAQ9NZM4 1560 aa27.01■■□□□ 1.91
CNOT3-208ENST00000613073 SMARCA4P51532 1647 aa26.96■■□□□ 1.91
CNOT3-208ENST00000613073 LOC105371045A0A1W2PR82 267 aa26.9■■□□□ 1.9
CNOT3-208ENST00000613073 TRIM41Q8WV44 630 aa26.9■■□□□ 1.9
CNOT3-208ENST00000613073 PPARGC1BQ86YN6 1023 aaKnown RBP26.89■■□□□ 1.9
CNOT3-208ENST00000613073 PCGF6Q9BYE7 350 aa26.78■■□□□ 1.88
CNOT3-208ENST00000613073 TOP2AP11388 1531 aaKnown RBP26.76■■□□□ 1.87
CNOT3-208ENST00000613073 FAM9AQ8IZU1 332 aaPredicted RBP26.67■■□□□ 1.86
CNOT3-208ENST00000613073 CCDC88BA6NC98 1476 aa26.64■■□□□ 1.86
CNOT3-208ENST00000613073 SMARCA2P51531 1590 aa26.59■■□□□ 1.85
CNOT3-208ENST00000613073 EIF4G1Q04637 1599 aaKnown RBP26.53■■□□□ 1.84
CNOT3-208ENST00000613073 EHMT2Q96KQ7 1210 aa26.48■■□□□ 1.83
CNOT3-208ENST00000613073 PEG3Q9GZU2 1588 aa26.45■■□□□ 1.82
CNOT3-208ENST00000613073 ATAD2BQ9ULI0 1458 aa26.42■■□□□ 1.82
CNOT3-208ENST00000613073 ABCC8Q09428 1581 aa26.39■■□□□ 1.82
CNOT3-208ENST00000613073 BAZ1BQ9UIG0 1483 aaKnown RBP26.32■■□□□ 1.8
CNOT3-208ENST00000613073 PELP1Q8IZL8 1130 aaKnown RBP26.22■■□□□ 1.79
CNOT3-208ENST00000613073 SOGA1O94964 1423 aa26.03■■□□□ 1.76
CNOT3-208ENST00000613073 WRNQ14191 1432 aaPredicted RBP eCLIP26.02■■□□□ 1.76
CNOT3-208ENST00000613073 NCAPD3P42695 1498 aa26■■□□□ 1.75
CNOT3-208ENST00000613073 HMGXB3Q12766 1538 aa25.94■■□□□ 1.74
CNOT3-208ENST00000613073 RUSC2Q8N2Y8 1516 aa25.93■■□□□ 1.74
CNOT3-208ENST00000613073 SYNJ1O43426 1573 aa25.9■■□□□ 1.74
CNOT3-208ENST00000613073 TRIM26Q12899 539 aaPredicted RBP25.9■■□□□ 1.74
CNOT3-208ENST00000613073 SCAF1Q9H7N4 1312 aaKnown RBP25.89■■□□□ 1.74
CNOT3-208ENST00000613073 CSRNP3Q8WYN3 585 aa25.84■■□□□ 1.73
CNOT3-208ENST00000613073 EEA1Q15075 1411 aa25.77■■□□□ 1.72
CNOT3-208ENST00000613073 UBTFP17480 764 aaKnown RBP25.72■■□□□ 1.71
CNOT3-208ENST00000613073 CC2D2AQ9P2K1 1620 aa25.67■■□□□ 1.7
CNOT3-208ENST00000613073 CFTRP13569 1480 aa25.63■■□□□ 1.69
CNOT3-208ENST00000613073 TOP2BQ02880 1626 aa25.63■■□□□ 1.69
CNOT3-208ENST00000613073 CEP162Q5TB80 1403 aa25.63■■□□□ 1.69
CNOT3-208ENST00000613073 TNIKQ9UKE5 1360 aa25.62■■□□□ 1.69
CNOT3-208ENST00000613073 GOLGA3Q08378 1498 aa25.59■■□□□ 1.69
CNOT3-208ENST00000613073 BIVM-ERCC5R4GMW8 1640 aa25.53■■□□□ 1.68
CNOT3-208ENST00000613073 CUX1P39880 1505 aa25.52■■□□□ 1.68
CNOT3-208ENST00000613073 CEP164Q9UPV0 1460 aa25.5■■□□□ 1.67
CNOT3-208ENST00000613073 CADPSQ9ULU8 1353 aa25.48■■□□□ 1.67
CNOT3-208ENST00000613073 TTBK1Q5TCY1 1321 aaPredicted RBP25.46■■□□□ 1.67
CNOT3-208ENST00000613073 KIF21BO75037 1637 aa25.44■■□□□ 1.66
CNOT3-208ENST00000613073 RAPGEF2Q9Y4G8 1499 aa25.42■■□□□ 1.66
CNOT3-208ENST00000613073 ZEB1P37275 1124 aaPredicted RBP25.39■■□□□ 1.66
CNOT3-208ENST00000613073 RANGAP1P46060 587 aaPredicted RBP25.39■■□□□ 1.66
CNOT3-208ENST00000613073 PRDM2Q13029 1718 aa25.37■■□□□ 1.65
CNOT3-208ENST00000613073 CLIP1P30622 1438 aa25.29■■□□□ 1.64
CNOT3-208ENST00000613073 KIF27Q86VH2 1401 aa25.27■■□□□ 1.64
CNOT3-208ENST00000613073 NESP48681 1621 aa25.25■■□□□ 1.63
CNOT3-208ENST00000613073 FANCD2Q9BXW9 1451 aa25.23■■□□□ 1.63
CNOT3-208ENST00000613073 DNAJC5BQ9UF47 199 aa25.22■■□□□ 1.63
CNOT3-208ENST00000613073 PRXQ9BXM0 1461 aa25.22■■□□□ 1.63
CNOT3-208ENST00000613073 NEUROD1Q13562 356 aa25.17■■□□□ 1.62
CNOT3-208ENST00000613073 FGD5Q6ZNL6 1462 aa25.17■■□□□ 1.62
CNOT3-208ENST00000613073 CUX2O14529 1486 aa25.16■■□□□ 1.62
CNOT3-208ENST00000613073 ACIN1Q9UKV3 1341 aaKnown RBP25.14■■□□□ 1.62
CNOT3-208ENST00000613073 ERICH3Q5RHP9 1530 aa25.14■■□□□ 1.62
CNOT3-208ENST00000613073 MYT1Q01538 1121 aa25.14■■□□□ 1.62
CNOT3-208ENST00000613073 VPS8Q8N3P4 1428 aa25.08■■□□□ 1.61
CNOT3-208ENST00000613073 GTF3C3Q9Y5Q9 886 aa25.05■■□□□ 1.6
CNOT3-208ENST00000613073 IGF1RP08069 1367 aa25.05■■□□□ 1.6
CNOT3-208ENST00000613073 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.02■■□□□ 1.6
CNOT3-208ENST00000613073 APLP2Q06481 763 aa25■■□□□ 1.59
CNOT3-208ENST00000613073 RAD54L2Q9Y4B4 1467 aa25■■□□□ 1.59
CNOT3-208ENST00000613073 TOPBP1Q92547 1522 aa24.99■■□□□ 1.59
CNOT3-208ENST00000613073 DNMBPQ6XZF7 1577 aa24.99■■□□□ 1.59
CNOT3-208ENST00000613073 LAMC3Q9Y6N6 1575 aa24.98■■□□□ 1.59
CNOT3-208ENST00000613073 POLA1P09884 1462 aaPredicted RBP24.95■■□□□ 1.58
CNOT3-208ENST00000613073 CARMIL1Q5VZK9 1371 aa24.94■■□□□ 1.58
CNOT3-208ENST00000613073 ARAP1Q96P48 1450 aa24.93■■□□□ 1.58
CNOT3-208ENST00000613073 CCER1Q8TC90 406 aaPredicted RBP24.91■■□□□ 1.58
CNOT3-208ENST00000613073 URB2Q14146 1524 aaKnown RBP24.89■■□□□ 1.57
CNOT3-208ENST00000613073 PDS5BQ9NTI5 1447 aa24.87■■□□□ 1.57
CNOT3-208ENST00000613073 ABCA10Q8WWZ4 1543 aa24.84■■□□□ 1.57
CNOT3-208ENST00000613073 ARHGAP35Q9NRY4 1499 aa24.82■■□□□ 1.56
CNOT3-208ENST00000613073 CENPBP07199 599 aaPredicted RBP24.79■■□□□ 1.56
CNOT3-208ENST00000613073 HNRNPUL2Q1KMD3 747 aaKnown RBP24.79■■□□□ 1.56
CNOT3-208ENST00000613073 KIF21AQ7Z4S6 1674 aa24.79■■□□□ 1.56
CNOT3-208ENST00000613073 KANK4Q5T7N3 995 aaPredicted RBP24.75■■□□□ 1.55
CNOT3-208ENST00000613073 TDRD9Q8NDG6 1382 aaKnown RBP24.75■■□□□ 1.55
CNOT3-208ENST00000613073 DIEXFQ68CQ4 756 aaKnown RBP24.71■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms