RNA–Protein interactions for RNA: ENST00000612417.4

CDH1-213, Transcript of cadherin 1, humanhuman

TSL 5 BASIC

Gene CDH1, Length 2,068 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-213ENST00000612417 GRIN2BQ13224 1484 aa22.28■■□□□ 1.16
CDH1-213ENST00000612417 TTBK1Q5TCY1 1321 aaPredicted RBP22.27■■□□□ 1.16
CDH1-213ENST00000612417 ARAP1Q96P48 1450 aa22.25■■□□□ 1.15
CDH1-213ENST00000612417 ARHGAP35Q9NRY4 1499 aa22.24■■□□□ 1.15
CDH1-213ENST00000612417 CTTNBP2Q8WZ74 1663 aa22.24■■□□□ 1.15
CDH1-213ENST00000612417 APLP2Q06481 763 aa22.22■■□□□ 1.15
CDH1-213ENST00000612417 EIF4G3O43432 1585 aaKnown RBP22.22■■□□□ 1.15
CDH1-213ENST00000612417 FHAD1B1AJZ9 1412 aa22.22■■□□□ 1.15
CDH1-213ENST00000612417 MYT1Q01538 1121 aa22.2■■□□□ 1.14
CDH1-213ENST00000612417 ADAMTS12P58397 1594 aa22.19■■□□□ 1.14
CDH1-213ENST00000612417 P3H3Q8IVL6 736 aa22.15■■□□□ 1.14
CDH1-213ENST00000612417 SNAPC4Q5SXM2 1469 aa22.14■■□□□ 1.14
CDH1-213ENST00000612417 EFCAB5A4FU69 1503 aa22.07■■□□□ 1.12
CDH1-213ENST00000612417 MAGI1Q96QZ7 1491 aaPredicted RBP22.05■■□□□ 1.12
CDH1-213ENST00000612417 FHOD3Q2V2M9 1422 aa22.04■■□□□ 1.12
CDH1-213ENST00000612417 CHMP7Q8WUX9 453 aaPredicted RBP22.04■■□□□ 1.12
CDH1-213ENST00000612417 FBLN2P98095 1184 aa22.03■■□□□ 1.12
CDH1-213ENST00000612417 GRIN2AQ12879 1464 aa22.01■■□□□ 1.11
CDH1-213ENST00000612417 IQGAP2Q13576 1575 aa21.99■■□□□ 1.11
CDH1-213ENST00000612417 SYNJ2O15056 1496 aa21.99■■□□□ 1.11
CDH1-213ENST00000612417 ATP1B4Q9UN42 357 aaPredicted RBP21.98■■□□□ 1.11
CDH1-213ENST00000612417 SAMD9Q5K651 1589 aa21.96■■□□□ 1.11
CDH1-213ENST00000612417 DIEXFQ68CQ4 756 aaKnown RBP21.95■■□□□ 1.1
CDH1-213ENST00000612417 HNRNPUL2Q1KMD3 747 aaKnown RBP21.94■■□□□ 1.1
CDH1-213ENST00000612417 KANK4Q5T7N3 995 aaPredicted RBP21.93■■□□□ 1.1
CDH1-213ENST00000612417 FMN1Q68DA7 1419 aa21.91■■□□□ 1.1
CDH1-213ENST00000612417 PCF11O94913 1555 aaKnown RBP21.91■■□□□ 1.1
CDH1-213ENST00000612417 KIAA0586Q9BVV6 1533 aa21.91■■□□□ 1.1
CDH1-213ENST00000612417 CASKIN1Q8WXD9 1431 aa21.86■■□□□ 1.09
CDH1-213ENST00000612417 FYCO1Q9BQS8 1478 aa21.86■■□□□ 1.09
CDH1-213ENST00000612417 CEP170Q5SW79 1584 aa21.86■■□□□ 1.09
CDH1-213ENST00000612417 TIAM1Q13009 1591 aa21.86■■□□□ 1.09
CDH1-213ENST00000612417 ZNF316A6NFI3 1004 aaPredicted RBP21.86■■□□□ 1.09
CDH1-213ENST00000612417 UGGT2Q9NYU1 1516 aa21.85■■□□□ 1.09
CDH1-213ENST00000612417 RRBP1Q9P2E9 1410 aaKnown RBP21.84■■□□□ 1.09
CDH1-213ENST00000612417 SCAF1Q9H7N4 1312 aaKnown RBP21.84■■□□□ 1.09
CDH1-213ENST00000612417 MAP3K1Q13233 1512 aa21.83■■□□□ 1.09
CDH1-213ENST00000612417 CLSPNQ9HAW4 1339 aa21.81■■□□□ 1.08
CDH1-213ENST00000612417 NUP160Q12769 1436 aa21.8■■□□□ 1.08
CDH1-213ENST00000612417 CFAP43Q8NDM7 1665 aa21.79■■□□□ 1.08
CDH1-213ENST00000612417 LRRC9Q6ZRR7 1453 aa21.77■■□□□ 1.07
CDH1-213ENST00000612417 CHD1O14646 1710 aa21.76■■□□□ 1.07
CDH1-213ENST00000612417 KIAA0556O60303 1618 aa21.75■■□□□ 1.07
CDH1-213ENST00000612417 DISP1Q96F81 1524 aa21.75■■□□□ 1.07
CDH1-213ENST00000612417 JPH4Q96JJ6 628 aa21.75■■□□□ 1.07
CDH1-213ENST00000612417 ACIN1Q9UKV3 1341 aaKnown RBP21.74■■□□□ 1.07
CDH1-213ENST00000612417 DHX57Q6P158 1386 aaKnown RBP21.7■■□□□ 1.06
CDH1-213ENST00000612417 LRRIQ1Q96JM4 1722 aa21.7■■□□□ 1.06
CDH1-213ENST00000612417 CARMIL2Q6F5E8 1435 aa21.68■■□□□ 1.06
CDH1-213ENST00000612417 CCNB3Q8WWL7 1395 aa21.67■■□□□ 1.06
CDH1-213ENST00000612417 HECW1Q76N89 1606 aa21.67■■□□□ 1.06
CDH1-213ENST00000612417 CENPBP07199 599 aaPredicted RBP21.67■■□□□ 1.06
CDH1-213ENST00000612417 NEUROD1Q13562 356 aa21.65■■□□□ 1.06
CDH1-213ENST00000612417 MTUS2Q5JR59 1369 aa21.65■■□□□ 1.06
CDH1-213ENST00000612417 ARID3CA6NKF2 412 aa21.63■■□□□ 1.05
CDH1-213ENST00000612417 CCDC18Q5T9S5 1454 aa21.63■■□□□ 1.05
CDH1-213ENST00000612417 PHLDB1Q86UU1 1377 aa21.59■■□□□ 1.05
CDH1-213ENST00000612417 EPRSP07814 1512 aaKnown RBP21.59■■□□□ 1.05
CDH1-213ENST00000612417 RAPGEF6Q8TEU7 1601 aa21.57■■□□□ 1.04
CDH1-213ENST00000612417 PRG4Q92954 1404 aaPredicted RBP21.57■■□□□ 1.04
CDH1-213ENST00000612417 CDK13Q14004 1512 aaKnown RBP21.56■■□□□ 1.04
CDH1-213ENST00000612417 ITGAEP38570 1179 aa21.54■■□□□ 1.04
CDH1-213ENST00000612417 EHBP1L1Q8N3D4 1523 aa21.53■■□□□ 1.04
CDH1-213ENST00000612417 FAM50AQ14320 339 aaKnown RBP21.52■■□□□ 1.04
CDH1-213ENST00000612417 PLB1Q6P1J6 1458 aa21.52■■□□□ 1.03
CDH1-213ENST00000612417 SUPT6HQ7KZ85 1726 aaKnown RBP21.51■■□□□ 1.03
CDH1-213ENST00000612417 NUP153P49790 1475 aaKnown RBP21.51■■□□□ 1.03
CDH1-213ENST00000612417 MAGI3Q5TCQ9 1506 aa21.5■■□□□ 1.03
CDH1-213ENST00000612417 NCOA2Q15596 1464 aa21.48■■□□□ 1.03
CDH1-213ENST00000612417 SHROOM2Q13796 1616 aa21.48■■□□□ 1.03
CDH1-213ENST00000612417 PTPRGP23470 1445 aa21.46■■□□□ 1.03
CDH1-213ENST00000612417 MIER1Q8N108 512 aa21.46■■□□□ 1.03
CDH1-213ENST00000612417 CDK11AQ9UQ88 783 aaPredicted RBP21.46■■□□□ 1.03
CDH1-213ENST00000612417 CLASP1Q7Z460 1538 aa21.43■■□□□ 1.02
CDH1-213ENST00000612417 RAB3GAP2Q9H2M9 1393 aa21.42■■□□□ 1.02
CDH1-213ENST00000612417 FGD6Q6ZV73 1430 aa21.42■■□□□ 1.02
CDH1-213ENST00000612417 ABCA8O94911 1581 aa21.41■■□□□ 1.02
CDH1-213ENST00000612417 GTF3C3Q9Y5Q9 886 aa21.41■■□□□ 1.02
CDH1-213ENST00000612417 MYOM3Q5VTT5 1437 aa21.4■■□□□ 1.02
CDH1-213ENST00000612417 MAPKBP1O60336 1514 aa21.4■■□□□ 1.02
CDH1-213ENST00000612417 ERCC6L2Q5T890 1561 aa21.39■■□□□ 1.01
CDH1-213ENST00000612417 SETD5Q9C0A6 1442 aa21.39■■□□□ 1.01
CDH1-213ENST00000612417 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.37■■□□□ 1.01
CDH1-213ENST00000612417 ARHGEF11O15085 1522 aa21.37■■□□□ 1.01
CDH1-213ENST00000612417 TROQ12816 1431 aaPredicted RBP21.32■■□□□ 1
CDH1-213ENST00000612417 ATP10BO94823 1461 aa21.32■■□□□ 1
CDH1-213ENST00000612417 PLEKHD1A6NEE1 506 aa21.32■■□□□ 1
CDH1-213ENST00000612417 UACAQ9BZF9 1416 aa21.31■■□□□ 1
CDH1-213ENST00000612417 PTPN23Q9H3S7 1636 aa21.31■■□□□ 1
CDH1-213ENST00000612417 OSCARQ8IYS5 282 aa21.29■■□□□ 1
CDH1-213ENST00000612417 YTHDC1Q96MU7 727 aaKnown RBP21.26■□□□□ 0.99
CDH1-213ENST00000612417 MIA2Q96PC5 1412 aa21.24■□□□□ 0.99
CDH1-213ENST00000612417 KIF14Q15058 1648 aa21.23■□□□□ 0.99
CDH1-213ENST00000612417 ADCY10Q96PN6 1610 aa21.22■□□□□ 0.99
CDH1-213ENST00000612417 ABCC2Q92887 1545 aa21.22■□□□□ 0.99
CDH1-213ENST00000612417 TCOF1Q13428 1488 aaKnown RBP21.21■□□□□ 0.99
CDH1-213ENST00000612417 PTPRKQ15262 1439 aa21.18■□□□□ 0.98
CDH1-213ENST00000612417 CFDP1Q9UEE9 299 aaPredicted RBP21.17■□□□□ 0.98
CDH1-213ENST00000612417 ITSN2Q9NZM3 1697 aa21.17■□□□□ 0.98
CDH1-213ENST00000612417 TIMELESSQ9UNS1 1208 aa21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms