RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 JPH4Q96JJ6 628 aa27.24■■□□□ 1.95
SHKBP1-219ENST00000599575 SHROOM2Q13796 1616 aa27.22■■□□□ 1.95
SHKBP1-219ENST00000599575 ARHGEF11O15085 1522 aa27.21■■□□□ 1.95
SHKBP1-219ENST00000599575 IQGAP2Q13576 1575 aa27.18■■□□□ 1.94
SHKBP1-219ENST00000599575 GOLGA3Q08378 1498 aa27.16■■□□□ 1.94
SHKBP1-219ENST00000599575 PRG4Q92954 1404 aaPredicted RBP27.12■■□□□ 1.93
SHKBP1-219ENST00000599575 RIMBP3CA6NJZ7 1639 aa27.11■■□□□ 1.93
SHKBP1-219ENST00000599575 RIMBP3BA6NNM3 1639 aa27.11■■□□□ 1.93
SHKBP1-219ENST00000599575 RIMBP3Q9UFD9 1639 aa27.11■■□□□ 1.93
SHKBP1-219ENST00000599575 CTTNBP2Q8WZ74 1663 aa27.09■■□□□ 1.93
SHKBP1-219ENST00000599575 CARMIL2Q6F5E8 1435 aa27.08■■□□□ 1.93
SHKBP1-219ENST00000599575 UGGT2Q9NYU1 1516 aa27.08■■□□□ 1.93
SHKBP1-219ENST00000599575 UBTFP17480 764 aaKnown RBP27.03■■□□□ 1.92
SHKBP1-219ENST00000599575 ARAP1Q96P48 1450 aa26.99■■□□□ 1.91
SHKBP1-219ENST00000599575 ERCC6L2Q5T890 1561 aa26.97■■□□□ 1.91
SHKBP1-219ENST00000599575 DISP1Q96F81 1524 aa26.95■■□□□ 1.91
SHKBP1-219ENST00000599575 TNIKQ9UKE5 1360 aa26.94■■□□□ 1.9
SHKBP1-219ENST00000599575 CYB5RLQ6IPT4 315 aa26.93■■□□□ 1.9
SHKBP1-219ENST00000599575 KIAA0556O60303 1618 aa26.89■■□□□ 1.9
SHKBP1-219ENST00000599575 PTPRGP23470 1445 aa26.88■■□□□ 1.89
SHKBP1-219ENST00000599575 EHMT2Q96KQ7 1210 aa26.86■■□□□ 1.89
SHKBP1-219ENST00000599575 EFCAB5A4FU69 1503 aa26.85■■□□□ 1.89
SHKBP1-219ENST00000599575 SAMD9Q5K651 1589 aa26.84■■□□□ 1.89
SHKBP1-219ENST00000599575 RANGAP1P46060 587 aaPredicted RBP26.71■■□□□ 1.87
SHKBP1-219ENST00000599575 UACAQ9BZF9 1416 aa26.71■■□□□ 1.87
SHKBP1-219ENST00000599575 UHRF1BP1LA0JNW5 1464 aa26.7■■□□□ 1.87
SHKBP1-219ENST00000599575 ARHGAP35Q9NRY4 1499 aa26.68■■□□□ 1.86
SHKBP1-219ENST00000599575 LOC105371045A0A1W2PR82 267 aa26.68■■□□□ 1.86
SHKBP1-219ENST00000599575 P3H3Q8IVL6 736 aa26.68■■□□□ 1.86
SHKBP1-219ENST00000599575 CLIP1P30622 1438 aa26.66■■□□□ 1.86
SHKBP1-219ENST00000599575 FHOD3Q2V2M9 1422 aa26.65■■□□□ 1.86
SHKBP1-219ENST00000599575 TTBK1Q5TCY1 1321 aaPredicted RBP26.65■■□□□ 1.86
SHKBP1-219ENST00000599575 NPM1P06748 294 aaKnown RBP eCLIP26.64■■□□□ 1.86
SHKBP1-219ENST00000599575 ABCC2Q92887 1545 aa26.64■■□□□ 1.85
SHKBP1-219ENST00000599575 FMN1Q68DA7 1419 aa26.64■■□□□ 1.85
SHKBP1-219ENST00000599575 CEP162Q5TB80 1403 aa26.6■■□□□ 1.85
SHKBP1-219ENST00000599575 ADCY10Q96PN6 1610 aa26.6■■□□□ 1.85
SHKBP1-219ENST00000599575 ABCA8O94911 1581 aa26.59■■□□□ 1.85
SHKBP1-219ENST00000599575 PLB1Q6P1J6 1458 aa26.58■■□□□ 1.85
SHKBP1-219ENST00000599575 KDM5BQ9UGL1 1544 aa26.55■■□□□ 1.84
SHKBP1-219ENST00000599575 RAPGEF6Q8TEU7 1601 aa26.5■■□□□ 1.83
SHKBP1-219ENST00000599575 MAPKBP1O60336 1514 aa26.49■■□□□ 1.83
SHKBP1-219ENST00000599575 NUP153P49790 1475 aaKnown RBP26.42■■□□□ 1.82
SHKBP1-219ENST00000599575 CASKIN1Q8WXD9 1431 aa26.41■■□□□ 1.82
SHKBP1-219ENST00000599575 ATP10BO94823 1461 aa26.39■■□□□ 1.82
SHKBP1-219ENST00000599575 ZCCHC11Q5TAX3 1644 aaKnown RBP26.38■■□□□ 1.81
SHKBP1-219ENST00000599575 HECW1Q76N89 1606 aa26.38■■□□□ 1.81
SHKBP1-219ENST00000599575 FYCO1Q9BQS8 1478 aa26.37■■□□□ 1.81
SHKBP1-219ENST00000599575 ASXL2Q76L83 1435 aa26.36■■□□□ 1.81
SHKBP1-219ENST00000599575 ABCC10Q5T3U5 1492 aa26.31■■□□□ 1.8
SHKBP1-219ENST00000599575 EPRSP07814 1512 aaKnown RBP26.31■■□□□ 1.8
SHKBP1-219ENST00000599575 CCDC18Q5T9S5 1454 aa26.3■■□□□ 1.8
SHKBP1-219ENST00000599575 WDR7Q9Y4E6 1490 aa26.3■■□□□ 1.8
SHKBP1-219ENST00000599575 CDK11AQ9UQ88 783 aaPredicted RBP26.3■■□□□ 1.8
SHKBP1-219ENST00000599575 VPS8Q8N3P4 1428 aa26.3■■□□□ 1.8
SHKBP1-219ENST00000599575 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.29■■□□□ 1.8
SHKBP1-219ENST00000599575 HNRNPUL2Q1KMD3 747 aaKnown RBP26.29■■□□□ 1.8
SHKBP1-219ENST00000599575 ATP1B4Q9UN42 357 aaPredicted RBP26.29■■□□□ 1.8
SHKBP1-219ENST00000599575 PCF11O94913 1555 aaKnown RBP26.29■■□□□ 1.8
SHKBP1-219ENST00000599575 PLEKHD1A6NEE1 506 aa26.27■■□□□ 1.8
SHKBP1-219ENST00000599575 TRHP20396 242 aaPredicted RBP26.27■■□□□ 1.8
SHKBP1-219ENST00000599575 ARID3CA6NKF2 412 aa26.24■■□□□ 1.79
SHKBP1-219ENST00000599575 FAM69CQ0P6D2 419 aa26.21■■□□□ 1.79
SHKBP1-219ENST00000599575 GLI2P10070 1586 aa26.2■■□□□ 1.79
SHKBP1-219ENST00000599575 DIP2BQ9P265 1576 aa26.2■■□□□ 1.79
SHKBP1-219ENST00000599575 CDK13Q14004 1512 aaKnown RBP26.19■■□□□ 1.78
SHKBP1-219ENST00000599575 KCNH8Q96L42 1107 aa26.12■■□□□ 1.77
SHKBP1-219ENST00000599575 TROQ12816 1431 aaPredicted RBP26.12■■□□□ 1.77
SHKBP1-219ENST00000599575 MAP3K1Q13233 1512 aa26.1■■□□□ 1.77
SHKBP1-219ENST00000599575 KIF13AQ9H1H9 1805 aa26.09■■□□□ 1.77
SHKBP1-219ENST00000599575 LRRIQ1Q96JM4 1722 aa26.08■■□□□ 1.76
SHKBP1-219ENST00000599575 APLP2Q06481 763 aa26.05■■□□□ 1.76
SHKBP1-219ENST00000599575 ABCA9Q8IUA7 1624 aa26.03■■□□□ 1.76
SHKBP1-219ENST00000599575 CD109Q6YHK3 1445 aa26.03■■□□□ 1.76
SHKBP1-219ENST00000599575 CFAP43Q8NDM7 1665 aa26.03■■□□□ 1.76
SHKBP1-219ENST00000599575 MTUS2Q5JR59 1369 aa26.02■■□□□ 1.76
SHKBP1-219ENST00000599575 MAP3K4Q9Y6R4 1608 aa26.02■■□□□ 1.76
SHKBP1-219ENST00000599575 TIAM1Q13009 1591 aa26.01■■□□□ 1.75
SHKBP1-219ENST00000599575 MAGI3Q5TCQ9 1506 aa26■■□□□ 1.75
SHKBP1-219ENST00000599575 KIF14Q15058 1648 aa25.99■■□□□ 1.75
SHKBP1-219ENST00000599575 TEX14Q8IWB6 1497 aa25.99■■□□□ 1.75
SHKBP1-219ENST00000599575 EHBP1L1Q8N3D4 1523 aa25.97■■□□□ 1.75
SHKBP1-219ENST00000599575 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.96■■□□□ 1.75
SHKBP1-219ENST00000599575 PHLDB1Q86UU1 1377 aa25.95■■□□□ 1.74
SHKBP1-219ENST00000599575 LRRC9Q6ZRR7 1453 aa25.92■■□□□ 1.74
SHKBP1-219ENST00000599575 ARAP3Q8WWN8 1544 aa25.91■■□□□ 1.74
SHKBP1-219ENST00000599575 PLCH2O75038 1416 aa25.9■■□□□ 1.74
SHKBP1-219ENST00000599575 TTC37Q6PGP7 1564 aa25.88■■□□□ 1.73
SHKBP1-219ENST00000599575 NEO1Q92859 1461 aa25.87■■□□□ 1.73
SHKBP1-219ENST00000599575 PPRC1Q5VV67 1664 aaKnown RBP25.85■■□□□ 1.73
SHKBP1-219ENST00000599575 EFCAB2Q5VUJ9 269 aa25.83■■□□□ 1.73
SHKBP1-219ENST00000599575 KANK4Q5T7N3 995 aaPredicted RBP25.82■■□□□ 1.72
SHKBP1-219ENST00000599575 CCNB3Q8WWL7 1395 aa25.82■■□□□ 1.72
SHKBP1-219ENST00000599575 FANCAO15360 1455 aa25.81■■□□□ 1.72
SHKBP1-219ENST00000599575 SUPT6HQ7KZ85 1726 aaKnown RBP25.81■■□□□ 1.72
SHKBP1-219ENST00000599575 CFAP74Q9C0B2 1584 aa25.81■■□□□ 1.72
SHKBP1-219ENST00000599575 TSPOAP1O95153 1857 aa25.81■■□□□ 1.72
SHKBP1-219ENST00000599575 MYO5CQ9NQX4 1742 aa25.8■■□□□ 1.72
SHKBP1-219ENST00000599575 NCOA2Q15596 1464 aa25.79■■□□□ 1.72
SHKBP1-219ENST00000599575 GPATCH8Q9UKJ3 1502 aaKnown RBP25.78■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms