RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 NUP160Q12769 1436 aa23.67■■□□□ 1.38
SHKBP1-211ENST00000595945 CEP170Q5SW79 1584 aa23.66■■□□□ 1.38
SHKBP1-211ENST00000595945 CLIP1P30622 1438 aa23.65■■□□□ 1.38
SHKBP1-211ENST00000595945 IQGAP2Q13576 1575 aa23.62■■□□□ 1.37
SHKBP1-211ENST00000595945 KIAA0586Q9BVV6 1533 aa23.62■■□□□ 1.37
SHKBP1-211ENST00000595945 FBLN2P98095 1184 aa23.59■■□□□ 1.37
SHKBP1-211ENST00000595945 ARHGAP35Q9NRY4 1499 aa23.56■■□□□ 1.36
SHKBP1-211ENST00000595945 EFCAB5A4FU69 1503 aa23.54■■□□□ 1.36
SHKBP1-211ENST00000595945 SAMD9Q5K651 1589 aa23.54■■□□□ 1.36
SHKBP1-211ENST00000595945 UGGT2Q9NYU1 1516 aa23.53■■□□□ 1.36
SHKBP1-211ENST00000595945 ARAP1Q96P48 1450 aa23.51■■□□□ 1.35
SHKBP1-211ENST00000595945 RANGAP1P46060 587 aaPredicted RBP23.48■■□□□ 1.35
SHKBP1-211ENST00000595945 CLASP1Q7Z460 1538 aa23.46■■□□□ 1.35
SHKBP1-211ENST00000595945 SHROOM2Q13796 1616 aa23.44■■□□□ 1.34
SHKBP1-211ENST00000595945 VPS8Q8N3P4 1428 aa23.42■■□□□ 1.34
SHKBP1-211ENST00000595945 DISP1Q96F81 1524 aa23.41■■□□□ 1.34
SHKBP1-211ENST00000595945 KIAA0556O60303 1618 aa23.4■■□□□ 1.34
SHKBP1-211ENST00000595945 FHOD3Q2V2M9 1422 aa23.37■■□□□ 1.33
SHKBP1-211ENST00000595945 JPH4Q96JJ6 628 aa23.35■■□□□ 1.33
SHKBP1-211ENST00000595945 P3H3Q8IVL6 736 aa23.31■■□□□ 1.32
SHKBP1-211ENST00000595945 CARMIL2Q6F5E8 1435 aa23.28■■□□□ 1.32
SHKBP1-211ENST00000595945 FMN1Q68DA7 1419 aa23.27■■□□□ 1.32
SHKBP1-211ENST00000595945 PRG4Q92954 1404 aaPredicted RBP23.27■■□□□ 1.32
SHKBP1-211ENST00000595945 OSCARQ8IYS5 282 aa23.26■■□□□ 1.31
SHKBP1-211ENST00000595945 PCF11O94913 1555 aaKnown RBP23.25■■□□□ 1.31
SHKBP1-211ENST00000595945 CASKIN1Q8WXD9 1431 aa23.22■■□□□ 1.31
SHKBP1-211ENST00000595945 ERCC6L2Q5T890 1561 aa23.22■■□□□ 1.31
SHKBP1-211ENST00000595945 FYCO1Q9BQS8 1478 aa23.21■■□□□ 1.31
SHKBP1-211ENST00000595945 LRRIQ1Q96JM4 1722 aa23.16■■□□□ 1.3
SHKBP1-211ENST00000595945 MAP3K1Q13233 1512 aa23.14■■□□□ 1.3
SHKBP1-211ENST00000595945 CFAP43Q8NDM7 1665 aa23.13■■□□□ 1.29
SHKBP1-211ENST00000595945 RAPGEF6Q8TEU7 1601 aa23.13■■□□□ 1.29
SHKBP1-211ENST00000595945 HECW1Q76N89 1606 aa23.11■■□□□ 1.29
SHKBP1-211ENST00000595945 ABCA8O94911 1581 aa23.1■■□□□ 1.29
SHKBP1-211ENST00000595945 TIAM1Q13009 1591 aa23.1■■□□□ 1.29
SHKBP1-211ENST00000595945 PTPRGP23470 1445 aa23.08■■□□□ 1.29
SHKBP1-211ENST00000595945 PLB1Q6P1J6 1458 aa23.05■■□□□ 1.28
SHKBP1-211ENST00000595945 NUP153P49790 1475 aaKnown RBP23.04■■□□□ 1.28
SHKBP1-211ENST00000595945 APLP2Q06481 763 aa23.03■■□□□ 1.28
SHKBP1-211ENST00000595945 CCDC18Q5T9S5 1454 aa23.02■■□□□ 1.28
SHKBP1-211ENST00000595945 EPRSP07814 1512 aaKnown RBP23.01■■□□□ 1.27
SHKBP1-211ENST00000595945 TTBK1Q5TCY1 1321 aaPredicted RBP23■■□□□ 1.27
SHKBP1-211ENST00000595945 UACAQ9BZF9 1416 aa22.98■■□□□ 1.27
SHKBP1-211ENST00000595945 ATP1B4Q9UN42 357 aaPredicted RBP22.96■■□□□ 1.27
SHKBP1-211ENST00000595945 LRRC9Q6ZRR7 1453 aa22.96■■□□□ 1.27
SHKBP1-211ENST00000595945 ARHGEF11O15085 1522 aa22.96■■□□□ 1.27
SHKBP1-211ENST00000595945 CDK13Q14004 1512 aaKnown RBP22.95■■□□□ 1.26
SHKBP1-211ENST00000595945 KANK4Q5T7N3 995 aaPredicted RBP22.95■■□□□ 1.26
SHKBP1-211ENST00000595945 ABCC2Q92887 1545 aa22.95■■□□□ 1.26
SHKBP1-211ENST00000595945 UHRF1BP1LA0JNW5 1464 aa22.94■■□□□ 1.26
SHKBP1-211ENST00000595945 PPARGC1BQ86YN6 1023 aaKnown RBP22.94■■□□□ 1.26
SHKBP1-211ENST00000595945 RIMBP3CA6NJZ7 1639 aa22.9■■□□□ 1.26
SHKBP1-211ENST00000595945 RIMBP3BA6NNM3 1639 aa22.9■■□□□ 1.26
SHKBP1-211ENST00000595945 RIMBP3Q9UFD9 1639 aa22.9■■□□□ 1.26
SHKBP1-211ENST00000595945 MAGI3Q5TCQ9 1506 aa22.89■■□□□ 1.26
SHKBP1-211ENST00000595945 ATP10BO94823 1461 aa22.88■■□□□ 1.25
SHKBP1-211ENST00000595945 EHBP1L1Q8N3D4 1523 aa22.87■■□□□ 1.25
SHKBP1-211ENST00000595945 ADCY10Q96PN6 1610 aa22.87■■□□□ 1.25
SHKBP1-211ENST00000595945 KDM5BQ9UGL1 1544 aa22.83■■□□□ 1.25
SHKBP1-211ENST00000595945 SUPT6HQ7KZ85 1726 aaKnown RBP22.82■■□□□ 1.24
SHKBP1-211ENST00000595945 ZCCHC11Q5TAX3 1644 aaKnown RBP22.82■■□□□ 1.24
SHKBP1-211ENST00000595945 MTUS2Q5JR59 1369 aa22.81■■□□□ 1.24
SHKBP1-211ENST00000595945 ARID3CA6NKF2 412 aa22.81■■□□□ 1.24
SHKBP1-211ENST00000595945 TROQ12816 1431 aaPredicted RBP22.77■■□□□ 1.24
SHKBP1-211ENST00000595945 TRIM26Q12899 539 aaPredicted RBP22.75■■□□□ 1.23
SHKBP1-211ENST00000595945 CDK11AQ9UQ88 783 aaPredicted RBP22.75■■□□□ 1.23
SHKBP1-211ENST00000595945 NCOA2Q15596 1464 aa22.73■■□□□ 1.23
SHKBP1-211ENST00000595945 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.72■■□□□ 1.23
SHKBP1-211ENST00000595945 HNRNPUL2Q1KMD3 747 aaKnown RBP22.72■■□□□ 1.23
SHKBP1-211ENST00000595945 PHLDB1Q86UU1 1377 aa22.7■■□□□ 1.22
SHKBP1-211ENST00000595945 KIF14Q15058 1648 aa22.69■■□□□ 1.22
SHKBP1-211ENST00000595945 PLEKHD1A6NEE1 506 aa22.68■■□□□ 1.22
SHKBP1-211ENST00000595945 RRBP1Q9P2E9 1410 aaKnown RBP22.67■■□□□ 1.22
SHKBP1-211ENST00000595945 ABCC10Q5T3U5 1492 aa22.64■■□□□ 1.21
SHKBP1-211ENST00000595945 MYOM3Q5VTT5 1437 aa22.63■■□□□ 1.21
SHKBP1-211ENST00000595945 CYB5RLQ6IPT4 315 aa22.61■■□□□ 1.21
SHKBP1-211ENST00000595945 CDC42BPAQ5VT25 1732 aa22.6■■□□□ 1.21
SHKBP1-211ENST00000595945 ITSN2Q9NZM3 1697 aa22.59■■□□□ 1.21
SHKBP1-211ENST00000595945 WDR7Q9Y4E6 1490 aa22.59■■□□□ 1.21
SHKBP1-211ENST00000595945 FGD6Q6ZV73 1430 aa22.58■■□□□ 1.21
SHKBP1-211ENST00000595945 PCGF6Q9BYE7 350 aa22.58■■□□□ 1.21
SHKBP1-211ENST00000595945 CCNB3Q8WWL7 1395 aa22.57■■□□□ 1.2
SHKBP1-211ENST00000595945 ASXL2Q76L83 1435 aa22.57■■□□□ 1.2
SHKBP1-211ENST00000595945 MAPKBP1O60336 1514 aa22.55■■□□□ 1.2
SHKBP1-211ENST00000595945 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.55■■□□□ 1.2
SHKBP1-211ENST00000595945 MIA2Q96PC5 1412 aa22.55■■□□□ 1.2
SHKBP1-211ENST00000595945 TTC37Q6PGP7 1564 aa22.55■■□□□ 1.2
SHKBP1-211ENST00000595945 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.54■■□□□ 1.2
SHKBP1-211ENST00000595945 GPATCH8Q9UKJ3 1502 aaKnown RBP22.54■■□□□ 1.2
SHKBP1-211ENST00000595945 NPM1P06748 294 aaKnown RBP eCLIP22.54■■□□□ 1.2
SHKBP1-211ENST00000595945 PTPN23Q9H3S7 1636 aa22.53■■□□□ 1.2
SHKBP1-211ENST00000595945 TCOF1Q13428 1488 aaKnown RBP22.53■■□□□ 1.2
SHKBP1-211ENST00000595945 PREX2Q70Z35 1606 aa22.51■■□□□ 1.19
SHKBP1-211ENST00000595945 MYO5CQ9NQX4 1742 aa22.51■■□□□ 1.19
SHKBP1-211ENST00000595945 CDC42BPBQ9Y5S2 1711 aa22.51■■□□□ 1.19
SHKBP1-211ENST00000595945 ABCA9Q8IUA7 1624 aa22.49■■□□□ 1.19
SHKBP1-211ENST00000595945 KCNH8Q96L42 1107 aa22.45■■□□□ 1.18
SHKBP1-211ENST00000595945 DNAJC5Q9H3Z4 198 aa22.43■■□□□ 1.18
SHKBP1-211ENST00000595945 ARAP3Q8WWN8 1544 aa22.42■■□□□ 1.18
SHKBP1-211ENST00000595945 PLCH2O75038 1416 aa22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms