RNA–Protein interactions for RNA: ENST00000592911.5

SMAD4-215, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-215ENST00000592911 ERICH3Q5RHP9 1530 aa15.9■□□□□ 0.14
SMAD4-215ENST00000592911 KIF13AQ9H1H9 1805 aa15.89■□□□□ 0.13
SMAD4-215ENST00000592911 BIVM-ERCC5R4GMW8 1640 aa15.88■□□□□ 0.13
SMAD4-215ENST00000592911 ERCC6L2Q5T890 1561 aa15.87■□□□□ 0.13
SMAD4-215ENST00000592911 TOP2BQ02880 1626 aa15.86■□□□□ 0.13
SMAD4-215ENST00000592911 MSH5O43196 834 aa15.84■□□□□ 0.13
SMAD4-215ENST00000592911 MAPKBP1O60336 1514 aa15.8■□□□□ 0.12
SMAD4-215ENST00000592911 ABCC10Q5T3U5 1492 aa15.78■□□□□ 0.12
SMAD4-215ENST00000592911 PRG4Q92954 1404 aaPredicted RBP15.77■□□□□ 0.11
SMAD4-215ENST00000592911 RUSC2Q8N2Y8 1516 aa15.73■□□□□ 0.11
SMAD4-215ENST00000592911 JPH4Q96JJ6 628 aa15.73■□□□□ 0.11
SMAD4-215ENST00000592911 DIP2BQ9P265 1576 aa15.72■□□□□ 0.11
SMAD4-215ENST00000592911 NPM1P06748 294 aaKnown RBP eCLIP15.71■□□□□ 0.11
SMAD4-215ENST00000592911 ADCY10Q96PN6 1610 aa15.66■□□□□ 0.1
SMAD4-215ENST00000592911 FAM69CQ0P6D2 419 aa15.66■□□□□ 0.1
SMAD4-215ENST00000592911 KDM6BO15054 1643 aa15.65■□□□□ 0.1
SMAD4-215ENST00000592911 KIAA0586Q9BVV6 1533 aa15.64■□□□□ 0.09
SMAD4-215ENST00000592911 CUL7Q14999 1698 aa15.63■□□□□ 0.09
SMAD4-215ENST00000592911 TSPOAP1O95153 1857 aa15.55■□□□□ 0.08
SMAD4-215ENST00000592911 GLI2P10070 1586 aa15.55■□□□□ 0.08
SMAD4-215ENST00000592911 KIF27Q86VH2 1401 aa15.53■□□□□ 0.08
SMAD4-215ENST00000592911 KDM4FA0A1W2PPD8 638 aa15.53■□□□□ 0.08
SMAD4-215ENST00000592911 PLB1Q6P1J6 1458 aa15.52■□□□□ 0.08
SMAD4-215ENST00000592911 ABCC2Q92887 1545 aa15.52■□□□□ 0.07
SMAD4-215ENST00000592911 CARMIL2Q6F5E8 1435 aa15.51■□□□□ 0.07
SMAD4-215ENST00000592911 IGF1RP08069 1367 aa15.5■□□□□ 0.07
SMAD4-215ENST00000592911 SUPT5HO00267 1087 aaKnown RBP15.5■□□□□ 0.07
SMAD4-215ENST00000592911 UHRF1BP1LA0JNW5 1464 aa15.5■□□□□ 0.07
SMAD4-215ENST00000592911 PTPRGP23470 1445 aa15.5■□□□□ 0.07
SMAD4-215ENST00000592911 TNIKQ9UKE5 1360 aa15.49■□□□□ 0.07
SMAD4-215ENST00000592911 PPRC1Q5VV67 1664 aaKnown RBP15.46■□□□□ 0.07
SMAD4-215ENST00000592911 TEX14Q8IWB6 1497 aa15.44■□□□□ 0.06
SMAD4-215ENST00000592911 IQGAP2Q13576 1575 aa15.44■□□□□ 0.06
SMAD4-215ENST00000592911 ASXL2Q76L83 1435 aa15.43■□□□□ 0.06
SMAD4-215ENST00000592911 MAP3K4Q9Y6R4 1608 aa15.41■□□□□ 0.06
SMAD4-215ENST00000592911 CARMIL1Q5VZK9 1371 aa15.4■□□□□ 0.06
SMAD4-215ENST00000592911 KDM5BQ9UGL1 1544 aa15.4■□□□□ 0.06
SMAD4-215ENST00000592911 UACAQ9BZF9 1416 aa15.4■□□□□ 0.06
SMAD4-215ENST00000592911 ADGRL1O94910 1474 aa15.39■□□□□ 0.05
SMAD4-215ENST00000592911 EPRSP07814 1512 aaKnown RBP15.37■□□□□ 0.05
SMAD4-215ENST00000592911 PPP4R3CPQ6ZMV5 832 aa15.36■□□□□ 0.05
SMAD4-215ENST00000592911 ILDR1Q86SU0 546 aaPredicted RBP15.36■□□□□ 0.05
SMAD4-215ENST00000592911 UGGT2Q9NYU1 1516 aa15.35■□□□□ 0.05
SMAD4-215ENST00000592911 DISP1Q96F81 1524 aa15.34■□□□□ 0.05
SMAD4-215ENST00000592911 ZCCHC11Q5TAX3 1644 aaKnown RBP15.31■□□□□ 0.04
SMAD4-215ENST00000592911 HECW2Q9P2P5 1572 aa15.29■□□□□ 0.04
SMAD4-215ENST00000592911 COL17A1Q9UMD9 1497 aaPredicted RBP15.29■□□□□ 0.04
SMAD4-215ENST00000592911 CFAP43Q8NDM7 1665 aa15.28■□□□□ 0.04
SMAD4-215ENST00000592911 KIAA0556O60303 1618 aa15.28■□□□□ 0.04
SMAD4-215ENST00000592911 WDR7Q9Y4E6 1490 aa15.28■□□□□ 0.04
SMAD4-215ENST00000592911 MAGI3Q5TCQ9 1506 aa15.27■□□□□ 0.04
SMAD4-215ENST00000592911 RAPGEF2Q9Y4G8 1499 aa15.27■□□□□ 0.03
SMAD4-215ENST00000592911 GOLGA3Q08378 1498 aa15.22■□□□□ 0.03
SMAD4-215ENST00000592911 CTTNBP2Q8WZ74 1663 aa15.2■□□□□ 0.02
SMAD4-215ENST00000592911 PHLDB1Q86UU1 1377 aa15.19■□□□□ 0.02
SMAD4-215ENST00000592911 CD109Q6YHK3 1445 aa15.18■□□□□ 0.02
SMAD4-215ENST00000592911 ABCA8O94911 1581 aa15.17■□□□□ 0.02
SMAD4-215ENST00000592911 ARAP3Q8WWN8 1544 aa15.17■□□□□ 0.02
SMAD4-215ENST00000592911 TTBK1Q5TCY1 1321 aaPredicted RBP15.17■□□□□ 0.02
SMAD4-215ENST00000592911 SCAF1Q9H7N4 1312 aaKnown RBP15.15■□□□□ 0.02
SMAD4-215ENST00000592911 MAPK8IP2Q13387 824 aaPredicted RBP15.12■□□□□ 0.01
SMAD4-215ENST00000592911 FAM9AQ8IZU1 332 aaPredicted RBP15.11■□□□□ 0.01
SMAD4-215ENST00000592911 FBXO41Q8TF61 875 aa15.09■□□□□ 0.01
SMAD4-215ENST00000592911 KIF21BO75037 1637 aa15.09■□□□□ 0.01
SMAD4-215ENST00000592911 ABCA9Q8IUA7 1624 aa15.08■□□□□ 0
SMAD4-215ENST00000592911 ADAMTSL3P82987 1691 aa15.08■□□□□ 0
SMAD4-215ENST00000592911 KCNA4P22459 653 aa15.06■□□□□ 0
SMAD4-215ENST00000592911 NEO1Q92859 1461 aa15.06■□□□□ 0
SMAD4-215ENST00000592911 PTPRMP28827 1452 aa15.03■□□□□ -0
SMAD4-215ENST00000592911 PRXQ9BXM0 1461 aa15.03■□□□□ -0
SMAD4-215ENST00000592911 BCORL1Q5H9F3 1711 aa15□□□□□ -0.01
SMAD4-215ENST00000592911 KCNH8Q96L42 1107 aa15□□□□□ -0.01
SMAD4-215ENST00000592911 PCF11O94913 1555 aaKnown RBP14.99□□□□□ -0.01
SMAD4-215ENST00000592911 ATP10BO94823 1461 aa14.99□□□□□ -0.01
SMAD4-215ENST00000592911 SAMD9Q5K651 1589 aa14.95□□□□□ -0.02
SMAD4-215ENST00000592911 CFAP74Q9C0B2 1584 aa14.95□□□□□ -0.02
SMAD4-215ENST00000592911 ARHGEF40Q8TER5 1519 aa14.94□□□□□ -0.02
SMAD4-215ENST00000592911 RAPGEF6Q8TEU7 1601 aa14.94□□□□□ -0.02
SMAD4-215ENST00000592911 LMTK3Q96Q04 1460 aa14.93□□□□□ -0.02
SMAD4-215ENST00000592911 FRMPD1Q5SYB0 1578 aa14.93□□□□□ -0.02
SMAD4-215ENST00000592911 MADDQ8WXG6 1647 aa14.92□□□□□ -0.02
SMAD4-215ENST00000592911 NCBP3Q53F19 620 aaKnown RBP14.91□□□□□ -0.02
SMAD4-215ENST00000592911 RICTORQ6R327 1708 aa14.91□□□□□ -0.02
SMAD4-215ENST00000592911 POGZQ7Z3K3 1410 aa14.91□□□□□ -0.02
SMAD4-215ENST00000592911 CNKSR2Q8WXI2 1034 aa14.9□□□□□ -0.02
SMAD4-215ENST00000592911 FHOD3Q2V2M9 1422 aa14.9□□□□□ -0.02
SMAD4-215ENST00000592911 MAGI2Q86UL8 1455 aa14.89□□□□□ -0.03
SMAD4-215ENST00000592911 ZMYM4Q5VZL5 1548 aa14.89□□□□□ -0.03
SMAD4-215ENST00000592911 FANCAO15360 1455 aa14.88□□□□□ -0.03
SMAD4-215ENST00000592911 DENND4BO75064 1496 aaPredicted RBP14.88□□□□□ -0.03
SMAD4-215ENST00000592911 EFCAB5A4FU69 1503 aa14.87□□□□□ -0.03
SMAD4-215ENST00000592911 RAPGEF3O95398 923 aa14.86□□□□□ -0.03
SMAD4-215ENST00000592911 RIMS1Q86UR5 1692 aaKnown RBP14.86□□□□□ -0.03
SMAD4-215ENST00000592911 AKNAQ7Z591 1439 aa14.85□□□□□ -0.03
SMAD4-215ENST00000592911 NUP153P49790 1475 aaKnown RBP14.84□□□□□ -0.03
SMAD4-215ENST00000592911 DMRT2Q9Y5R5 561 aa14.84□□□□□ -0.03
SMAD4-215ENST00000592911 ARID4BQ4LE39 1312 aaPredicted RBP14.83□□□□□ -0.04
SMAD4-215ENST00000592911 SETD1BQ9UPS6 1966 aaKnown RBP14.82□□□□□ -0.04
SMAD4-215ENST00000592911 TTC37Q6PGP7 1564 aa14.81□□□□□ -0.04
SMAD4-215ENST00000592911 EEA1Q15075 1411 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms