RNA–Protein interactions for RNA: ENST00000591534.5

BRCA1-226, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-226ENST00000591534 GRIN2BQ13224 1484 aa16.93■□□□□ 0.3
BRCA1-226ENST00000591534 CUX1P39880 1505 aa16.91■□□□□ 0.3
BRCA1-226ENST00000591534 ARAP1Q96P48 1450 aa16.9■□□□□ 0.3
BRCA1-226ENST00000591534 SYNJ1O43426 1573 aa16.88■□□□□ 0.29
BRCA1-226ENST00000591534 SYNJ2O15056 1496 aa16.87■□□□□ 0.29
BRCA1-226ENST00000591534 SUPT5HO00267 1087 aaKnown RBP16.87■□□□□ 0.29
BRCA1-226ENST00000591534 GAPVD1Q14C86 1478 aa16.85■□□□□ 0.29
BRCA1-226ENST00000591534 DCAF8L1A6NGE4 600 aa16.83■□□□□ 0.28
BRCA1-226ENST00000591534 CLASP1Q7Z460 1538 aa16.82■□□□□ 0.28
BRCA1-226ENST00000591534 ABCA10Q8WWZ4 1543 aa16.8■□□□□ 0.28
BRCA1-226ENST00000591534 WRNQ14191 1432 aaPredicted RBP eCLIP16.79■□□□□ 0.281e-6■■■■■ 58.5
BRCA1-226ENST00000591534 SLC4A2P04920 1241 aa16.78■□□□□ 0.28
BRCA1-226ENST00000591534 PBRM1Q86U86 1689 aa16.71■□□□□ 0.27
BRCA1-226ENST00000591534 ABCA5Q8WWZ7 1642 aa16.7■□□□□ 0.26
BRCA1-226ENST00000591534 GRIN2AQ12879 1464 aa16.67■□□□□ 0.26
BRCA1-226ENST00000591534 FHAD1B1AJZ9 1412 aa16.65■□□□□ 0.26
BRCA1-226ENST00000591534 TOP2BQ02880 1626 aa16.63■□□□□ 0.25
BRCA1-226ENST00000591534 NUP160Q12769 1436 aa16.62■□□□□ 0.25
BRCA1-226ENST00000591534 ERICH3Q5RHP9 1530 aa16.6■□□□□ 0.25
BRCA1-226ENST00000591534 ADAMTS12P58397 1594 aa16.6■□□□□ 0.25
BRCA1-226ENST00000591534 BIVM-ERCC5R4GMW8 1640 aa16.59■□□□□ 0.25
BRCA1-226ENST00000591534 CEP170Q5SW79 1584 aa16.55■□□□□ 0.24
BRCA1-226ENST00000591534 CACNB1Q02641 598 aaPredicted RBP16.54■□□□□ 0.24
BRCA1-226ENST00000591534 JPH4Q96JJ6 628 aa16.53■□□□□ 0.24
BRCA1-226ENST00000591534 PRG4Q92954 1404 aaPredicted RBP16.5■□□□□ 0.23
BRCA1-226ENST00000591534 NPM1P06748 294 aaKnown RBP eCLIP16.49■□□□□ 0.23
BRCA1-226ENST00000591534 ERCC6L2Q5T890 1561 aa16.49■□□□□ 0.23
BRCA1-226ENST00000591534 SHROOM2Q13796 1616 aa16.48■□□□□ 0.23
BRCA1-226ENST00000591534 MYCNP04198 464 aaPredicted RBP16.42■□□□□ 0.22
BRCA1-226ENST00000591534 KIF27Q86VH2 1401 aa16.42■□□□□ 0.22
BRCA1-226ENST00000591534 RNF39Q9H2S5 420 aa16.41■□□□□ 0.22
BRCA1-226ENST00000591534 IGF1RP08069 1367 aa16.38■□□□□ 0.21
BRCA1-226ENST00000591534 KIAA0586Q9BVV6 1533 aa16.37■□□□□ 0.21
BRCA1-226ENST00000591534 FAM69CQ0P6D2 419 aa16.36■□□□□ 0.21
BRCA1-226ENST00000591534 RUSC2Q8N2Y8 1516 aa16.35■□□□□ 0.21
BRCA1-226ENST00000591534 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.34■□□□□ 0.211e-6■■■□□ 18.6
BRCA1-226ENST00000591534 CUL7Q14999 1698 aa16.31■□□□□ 0.2
BRCA1-226ENST00000591534 ABCC10Q5T3U5 1492 aa16.3■□□□□ 0.2
BRCA1-226ENST00000591534 CARMIL1Q5VZK9 1371 aa16.29■□□□□ 0.2
BRCA1-226ENST00000591534 MAPKBP1O60336 1514 aa16.29■□□□□ 0.2
BRCA1-226ENST00000591534 CARMIL2Q6F5E8 1435 aa16.28■□□□□ 0.2
BRCA1-226ENST00000591534 PTPRGP23470 1445 aa16.27■□□□□ 0.19
BRCA1-226ENST00000591534 KIF13AQ9H1H9 1805 aa16.23■□□□□ 0.19
BRCA1-226ENST00000591534 TNIKQ9UKE5 1360 aa16.23■□□□□ 0.19
BRCA1-226ENST00000591534 ATXN8OSP0DMR3 200 aa16.22■□□□□ 0.19
BRCA1-226ENST00000591534 ADCY10Q96PN6 1610 aa16.22■□□□□ 0.19
BRCA1-226ENST00000591534 TTBK1Q5TCY1 1321 aaPredicted RBP16.2■□□□□ 0.18
BRCA1-226ENST00000591534 DIP2BQ9P265 1576 aa16.19■□□□□ 0.18
BRCA1-226ENST00000591534 IQGAP2Q13576 1575 aa16.15■□□□□ 0.18
BRCA1-226ENST00000591534 ABCC2Q92887 1545 aa16.14■□□□□ 0.18
BRCA1-226ENST00000591534 U3KPZ7 1027 aaPredicted RBP16.14■□□□□ 0.17
BRCA1-226ENST00000591534 PLB1Q6P1J6 1458 aa16.14■□□□□ 0.17
BRCA1-226ENST00000591534 UACAQ9BZF9 1416 aa16.12■□□□□ 0.17
BRCA1-226ENST00000591534 RAPGEF2Q9Y4G8 1499 aa16.12■□□□□ 0.17
BRCA1-226ENST00000591534 ATF5Q9Y2D1 282 aaPredicted RBP16.12■□□□□ 0.17
BRCA1-226ENST00000591534 UHRF1BP1LA0JNW5 1464 aa16.11■□□□□ 0.17
BRCA1-226ENST00000591534 KDM6BO15054 1643 aa16.11■□□□□ 0.17
BRCA1-226ENST00000591534 ASXL2Q76L83 1435 aa16.11■□□□□ 0.17
BRCA1-226ENST00000591534 C1QBPQ07021 282 aaKnown RBP16.1■□□□□ 0.17
BRCA1-226ENST00000591534 FAM9AQ8IZU1 332 aaPredicted RBP16.08■□□□□ 0.16
BRCA1-226ENST00000591534 DISP1Q96F81 1524 aa16.06■□□□□ 0.16
BRCA1-226ENST00000591534 UGGT2Q9NYU1 1516 aa16.05■□□□□ 0.16
BRCA1-226ENST00000591534 GLI2P10070 1586 aa16.04■□□□□ 0.16
BRCA1-226ENST00000591534 KDM5BQ9UGL1 1544 aa16.02■□□□□ 0.15
BRCA1-226ENST00000591534 TSPOAP1O95153 1857 aa16.01■□□□□ 0.15
BRCA1-226ENST00000591534 KDM4FA0A1W2PPD8 638 aa16.01■□□□□ 0.15
BRCA1-226ENST00000591534 GOLGA3Q08378 1498 aa16.01■□□□□ 0.15
BRCA1-226ENST00000591534 TEX14Q8IWB6 1497 aa16■□□□□ 0.15
BRCA1-226ENST00000591534 EPRSP07814 1512 aaKnown RBP15.99■□□□□ 0.15
BRCA1-226ENST00000591534 KIAA0556O60303 1618 aa15.97■□□□□ 0.15
BRCA1-226ENST00000591534 SAMD1Q6SPF0 538 aaPredicted RBP15.97■□□□□ 0.15
BRCA1-226ENST00000591534 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.95■□□□□ 0.14
BRCA1-226ENST00000591534 HNRNPUL2Q1KMD3 747 aaKnown RBP15.95■□□□□ 0.14
BRCA1-226ENST00000591534 WDR7Q9Y4E6 1490 aa15.93■□□□□ 0.14
BRCA1-226ENST00000591534 ZCCHC11Q5TAX3 1644 aaKnown RBP15.91■□□□□ 0.14
BRCA1-226ENST00000591534 KCNH8Q96L42 1107 aa15.9■□□□□ 0.14
BRCA1-226ENST00000591534 PRXQ9BXM0 1461 aa15.9■□□□□ 0.14
BRCA1-226ENST00000591534 MAP3K4Q9Y6R4 1608 aa15.89■□□□□ 0.13
BRCA1-226ENST00000591534 CD109Q6YHK3 1445 aa15.88■□□□□ 0.13
BRCA1-226ENST00000591534 PPRC1Q5VV67 1664 aaKnown RBP15.88■□□□□ 0.13
BRCA1-226ENST00000591534 CTTNBP2Q8WZ74 1663 aa15.86■□□□□ 0.13
BRCA1-226ENST00000591534 ADGRL1O94910 1474 aa15.85■□□□□ 0.13
BRCA1-226ENST00000591534 COL17A1Q9UMD9 1497 aaPredicted RBP15.85■□□□□ 0.13
BRCA1-226ENST00000591534 MAGI3Q5TCQ9 1506 aa15.84■□□□□ 0.13
BRCA1-226ENST00000591534 ABCA8O94911 1581 aa15.83■□□□□ 0.13
BRCA1-226ENST00000591534 FKBP8Q14318 412 aa15.81■□□□□ 0.12
BRCA1-226ENST00000591534 P3H3Q8IVL6 736 aa15.8■□□□□ 0.12
BRCA1-226ENST00000591534 PHLDB1Q86UU1 1377 aa15.79■□□□□ 0.12
BRCA1-226ENST00000591534 CFAP43Q8NDM7 1665 aa15.79■□□□□ 0.12
BRCA1-226ENST00000591534 EEA1Q15075 1411 aa15.77■□□□□ 0.11
BRCA1-226ENST00000591534 ARID3CA6NKF2 412 aa15.76■□□□□ 0.11
BRCA1-226ENST00000591534 ATP10BO94823 1461 aa15.74■□□□□ 0.11
BRCA1-226ENST00000591534 ARAP3Q8WWN8 1544 aa15.72■□□□□ 0.11
BRCA1-226ENST00000591534 ZNF219Q9P2Y4 722 aaPredicted RBP15.7■□□□□ 0.1
BRCA1-226ENST00000591534 PLEKHD1A6NEE1 506 aa15.69■□□□□ 0.1
BRCA1-226ENST00000591534 RANGAP1P46060 587 aaPredicted RBP15.68■□□□□ 0.1
BRCA1-226ENST00000591534 SAMD9Q5K651 1589 aa15.67■□□□□ 0.1
BRCA1-226ENST00000591534 NEO1Q92859 1461 aa15.66■□□□□ 0.1
BRCA1-226ENST00000591534 RAPGEF6Q8TEU7 1601 aa15.65■□□□□ 0.1
BRCA1-226ENST00000591534 ABCA9Q8IUA7 1624 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms