RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 KIAA0586Q9BVV6 1533 aa19.99■□□□□ 0.79
LIG3-213ENST00000590630 EEA1Q15075 1411 aa19.98■□□□□ 0.79
LIG3-213ENST00000590630 PRXQ9BXM0 1461 aa19.94■□□□□ 0.78
LIG3-213ENST00000590630 ERCC6L2Q5T890 1561 aa19.93■□□□□ 0.78
LIG3-213ENST00000590630 CYB5RLQ6IPT4 315 aa19.93■□□□□ 0.78
LIG3-213ENST00000590630 JPH4Q96JJ6 628 aa19.93■□□□□ 0.78
LIG3-213ENST00000590630 PRG4Q92954 1404 aaPredicted RBP19.91■□□□□ 0.78
LIG3-213ENST00000590630 IQGAP2Q13576 1575 aa19.91■□□□□ 0.78
LIG3-213ENST00000590630 CSRNP3Q8WYN3 585 aa19.9■□□□□ 0.78
LIG3-213ENST00000590630 CTTNBP2Q8WZ74 1663 aa19.88■□□□□ 0.77
LIG3-213ENST00000590630 FAM9AQ8IZU1 332 aaPredicted RBP19.79■□□□□ 0.76
LIG3-213ENST00000590630 CARMIL2Q6F5E8 1435 aa19.78■□□□□ 0.76
LIG3-213ENST00000590630 UGGT2Q9NYU1 1516 aa19.78■□□□□ 0.76
LIG3-213ENST00000590630 KIF21BO75037 1637 aa19.78■□□□□ 0.76
LIG3-213ENST00000590630 DISP1Q96F81 1524 aa19.73■□□□□ 0.75
LIG3-213ENST00000590630 KIAA0556O60303 1618 aa19.71■□□□□ 0.75
LIG3-213ENST00000590630 TNIKQ9UKE5 1360 aa19.7■□□□□ 0.74
LIG3-213ENST00000590630 GOLGA3Q08378 1498 aa19.68■□□□□ 0.74
LIG3-213ENST00000590630 PTPRGP23470 1445 aa19.68■□□□□ 0.74
LIG3-213ENST00000590630 ADCY10Q96PN6 1610 aa19.64■□□□□ 0.73
LIG3-213ENST00000590630 SAMD9Q5K651 1589 aa19.59■□□□□ 0.73
LIG3-213ENST00000590630 TTBK1Q5TCY1 1321 aaPredicted RBP19.57■□□□□ 0.72
LIG3-213ENST00000590630 UHRF1BP1LA0JNW5 1464 aa19.55■□□□□ 0.72
LIG3-213ENST00000590630 UACAQ9BZF9 1416 aa19.55■□□□□ 0.72
LIG3-213ENST00000590630 NPM1P06748 294 aaKnown RBP eCLIP19.54■□□□□ 0.72
LIG3-213ENST00000590630 UBTFP17480 764 aaKnown RBP19.54■□□□□ 0.72
LIG3-213ENST00000590630 ABCC2Q92887 1545 aa19.54■□□□□ 0.72
LIG3-213ENST00000590630 EFCAB5A4FU69 1503 aa19.52■□□□□ 0.72
LIG3-213ENST00000590630 MAPKBP1O60336 1514 aa19.52■□□□□ 0.72
LIG3-213ENST00000590630 TRHP20396 242 aaPredicted RBP19.52■□□□□ 0.72
LIG3-213ENST00000590630 EHMT2Q96KQ7 1210 aa19.5■□□□□ 0.71
LIG3-213ENST00000590630 ABCA8O94911 1581 aa19.49■□□□□ 0.71
LIG3-213ENST00000590630 PLB1Q6P1J6 1458 aa19.48■□□□□ 0.71
LIG3-213ENST00000590630 RANGAP1P46060 587 aaPredicted RBP19.46■□□□□ 0.71
LIG3-213ENST00000590630 P3H3Q8IVL6 736 aa19.46■□□□□ 0.71
LIG3-213ENST00000590630 KDM5BQ9UGL1 1544 aa19.46■□□□□ 0.71
LIG3-213ENST00000590630 KIF13AQ9H1H9 1805 aa19.44■□□□□ 0.7
LIG3-213ENST00000590630 ZCCHC11Q5TAX3 1644 aaKnown RBP19.43■□□□□ 0.7
LIG3-213ENST00000590630 FHOD3Q2V2M9 1422 aa19.42■□□□□ 0.7
LIG3-213ENST00000590630 ABCC10Q5T3U5 1492 aa19.41■□□□□ 0.7
LIG3-213ENST00000590630 DIP2BQ9P265 1576 aa19.4■□□□□ 0.7
LIG3-213ENST00000590630 RAPGEF6Q8TEU7 1601 aa19.4■□□□□ 0.7
LIG3-213ENST00000590630 ASXL2Q76L83 1435 aa19.38■□□□□ 0.69
LIG3-213ENST00000590630 ARHGAP35Q9NRY4 1499 aa19.37■□□□□ 0.69
LIG3-213ENST00000590630 FAM69CQ0P6D2 419 aa19.32■□□□□ 0.68
LIG3-213ENST00000590630 FMN1Q68DA7 1419 aa19.32■□□□□ 0.68
LIG3-213ENST00000590630 NUP153P49790 1475 aaKnown RBP19.3■□□□□ 0.68
LIG3-213ENST00000590630 WDR7Q9Y4E6 1490 aa19.3■□□□□ 0.68
LIG3-213ENST00000590630 ATP10BO94823 1461 aa19.29■□□□□ 0.68
LIG3-213ENST00000590630 GLI2P10070 1586 aa19.29■□□□□ 0.68
LIG3-213ENST00000590630 CLIP1P30622 1438 aa19.27■□□□□ 0.68
LIG3-213ENST00000590630 EPRSP07814 1512 aaKnown RBP19.27■□□□□ 0.68
LIG3-213ENST00000590630 HECW1Q76N89 1606 aa19.25■□□□□ 0.67
LIG3-213ENST00000590630 TSPOAP1O95153 1857 aa19.24■□□□□ 0.67
LIG3-213ENST00000590630 ARID3CA6NKF2 412 aa19.23■□□□□ 0.67
LIG3-213ENST00000590630 MAP3K4Q9Y6R4 1608 aa19.22■□□□□ 0.67
LIG3-213ENST00000590630 CEP162Q5TB80 1403 aa19.19■□□□□ 0.66
LIG3-213ENST00000590630 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.19■□□□□ 0.66
LIG3-213ENST00000590630 HNRNPUL2Q1KMD3 747 aaKnown RBP19.19■□□□□ 0.66
LIG3-213ENST00000590630 CFAP43Q8NDM7 1665 aa19.18■□□□□ 0.66
LIG3-213ENST00000590630 PPRC1Q5VV67 1664 aaKnown RBP19.17■□□□□ 0.66
LIG3-213ENST00000590630 PCF11O94913 1555 aaKnown RBP19.16■□□□□ 0.66
LIG3-213ENST00000590630 LOC105371045A0A1W2PR82 267 aa19.16■□□□□ 0.66
LIG3-213ENST00000590630 CASKIN1Q8WXD9 1431 aa19.16■□□□□ 0.66
LIG3-213ENST00000590630 CDK13Q14004 1512 aaKnown RBP19.15■□□□□ 0.66
LIG3-213ENST00000590630 KCNH8Q96L42 1107 aa19.15■□□□□ 0.66
LIG3-213ENST00000590630 LRRIQ1Q96JM4 1722 aa19.14■□□□□ 0.66
LIG3-213ENST00000590630 FYCO1Q9BQS8 1478 aa19.14■□□□□ 0.65
LIG3-213ENST00000590630 PLEKHD1A6NEE1 506 aa19.13■□□□□ 0.65
LIG3-213ENST00000590630 ATP1B4Q9UN42 357 aaPredicted RBP19.13■□□□□ 0.65
LIG3-213ENST00000590630 ABCA9Q8IUA7 1624 aa19.13■□□□□ 0.65
LIG3-213ENST00000590630 TEX14Q8IWB6 1497 aa19.12■□□□□ 0.65
LIG3-213ENST00000590630 CCDC18Q5T9S5 1454 aa19.1■□□□□ 0.65
LIG3-213ENST00000590630 CD109Q6YHK3 1445 aa19.1■□□□□ 0.65
LIG3-213ENST00000590630 MAGI3Q5TCQ9 1506 aa19.09■□□□□ 0.65
LIG3-213ENST00000590630 KDM6BO15054 1643 aa19.07■□□□□ 0.64
LIG3-213ENST00000590630 CDK11AQ9UQ88 783 aaPredicted RBP19.07■□□□□ 0.64
LIG3-213ENST00000590630 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.02■□□□□ 0.64
LIG3-213ENST00000590630 TROQ12816 1431 aaPredicted RBP19.01■□□□□ 0.63
LIG3-213ENST00000590630 KIF14Q15058 1648 aa19.01■□□□□ 0.63
LIG3-213ENST00000590630 TTC37Q6PGP7 1564 aa19.01■□□□□ 0.63
LIG3-213ENST00000590630 VPS8Q8N3P4 1428 aa18.97■□□□□ 0.63
LIG3-213ENST00000590630 PHLDB1Q86UU1 1377 aa18.96■□□□□ 0.63
LIG3-213ENST00000590630 MYO5CQ9NQX4 1742 aa18.96■□□□□ 0.63
LIG3-213ENST00000590630 NEO1Q92859 1461 aa18.96■□□□□ 0.63
LIG3-213ENST00000590630 CFAP74Q9C0B2 1584 aa18.95■□□□□ 0.62
LIG3-213ENST00000590630 COL17A1Q9UMD9 1497 aaPredicted RBP18.94■□□□□ 0.62
LIG3-213ENST00000590630 ARAP3Q8WWN8 1544 aa18.93■□□□□ 0.62
LIG3-213ENST00000590630 PLCH2O75038 1416 aa18.91■□□□□ 0.62
LIG3-213ENST00000590630 FANCAO15360 1455 aa18.9■□□□□ 0.62
LIG3-213ENST00000590630 TIAM1Q13009 1591 aa18.87■□□□□ 0.61
LIG3-213ENST00000590630 MTUS2Q5JR59 1369 aa18.87■□□□□ 0.61
LIG3-213ENST00000590630 EHBP1L1Q8N3D4 1523 aa18.87■□□□□ 0.61
LIG3-213ENST00000590630 PREX2Q70Z35 1606 aa18.86■□□□□ 0.61
LIG3-213ENST00000590630 CDC42BPBQ9Y5S2 1711 aa18.86■□□□□ 0.61
LIG3-213ENST00000590630 AKNAQ7Z591 1439 aa18.85■□□□□ 0.61
LIG3-213ENST00000590630 CDC42BPAQ5VT25 1732 aa18.85■□□□□ 0.61
LIG3-213ENST00000590630 ARHGAP5Q13017 1502 aa18.84■□□□□ 0.61
LIG3-213ENST00000590630 MAP3K1Q13233 1512 aa18.84■□□□□ 0.61
LIG3-213ENST00000590630 EFCAB2Q5VUJ9 269 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms