RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	FHAD1	B1AJZ9	1412 aa		24.08	■■□□□ 1.45
DDX39A-209	ENST00000589318	PCGF6	Q9BYE7	350 aa		24.05	■■□□□ 1.44
DDX39A-209	ENST00000589318	TRIM26	Q12899	539 aa	Predicted RBP	24.04	■■□□□ 1.44
DDX39A-209	ENST00000589318	SNAPC4	Q5SXM2	1469 aa		24	■■□□□ 1.43
DDX39A-209	ENST00000589318	PPARGC1B	Q86YN6	1023 aa	Known RBP	24	■■□□□ 1.43
DDX39A-209	ENST00000589318	MAGI1	Q96QZ7	1491 aa	Predicted RBP	23.94	■■□□□ 1.42
DDX39A-209	ENST00000589318	EFCAB5	A4FU69	1503 aa		23.93	■■□□□ 1.42
DDX39A-209	ENST00000589318	GRIN2A	Q12879	1464 aa		23.88	■■□□□ 1.41
DDX39A-209	ENST00000589318	SAMD9	Q5K651	1589 aa		23.88	■■□□□ 1.41
DDX39A-209	ENST00000589318	SYNJ2	O15056	1496 aa		23.85	■■□□□ 1.41
DDX39A-209	ENST00000589318	IQGAP2	Q13576	1575 aa		23.84	■■□□□ 1.41
DDX39A-209	ENST00000589318	FHOD3	Q2V2M9	1422 aa		23.82	■■□□□ 1.4
DDX39A-209	ENST00000589318	P3H3	Q8IVL6	736 aa		23.78	■■□□□ 1.4
DDX39A-209	ENST00000589318	TTBK1	Q5TCY1	1321 aa	Predicted RBP	23.77	■■□□□ 1.4
DDX39A-209	ENST00000589318	KIAA0586	Q9BVV6	1533 aa		23.77	■■□□□ 1.4
DDX39A-209	ENST00000589318	PCF11	O94913	1555 aa	Known RBP	23.76	■■□□□ 1.39
DDX39A-209	ENST00000589318	CEP170	Q5SW79	1584 aa		23.76	■■□□□ 1.39
DDX39A-209	ENST00000589318	APLP2	Q06481	763 aa		23.74	■■□□□ 1.39
DDX39A-209	ENST00000589318	UGGT2	Q9NYU1	1516 aa		23.74	■■□□□ 1.39
DDX39A-209	ENST00000589318	CHMP7	Q8WUX9	453 aa	Predicted RBP	23.73	■■□□□ 1.39
DDX39A-209	ENST00000589318	NUP160	Q12769	1436 aa		23.72	■■□□□ 1.39
DDX39A-209	ENST00000589318	MAP3K1	Q13233	1512 aa		23.7	■■□□□ 1.38
DDX39A-209	ENST00000589318	FMN1	Q68DA7	1419 aa		23.68	■■□□□ 1.38
DDX39A-209	ENST00000589318	FYCO1	Q9BQS8	1478 aa		23.68	■■□□□ 1.38
DDX39A-209	ENST00000589318	TIAM1	Q13009	1591 aa		23.68	■■□□□ 1.38
DDX39A-209	ENST00000589318	CASKIN1	Q8WXD9	1431 aa		23.67	■■□□□ 1.38
DDX39A-209	ENST00000589318	KANK4	Q5T7N3	995 aa	Predicted RBP	23.67	■■□□□ 1.38
DDX39A-209	ENST00000589318	FBLN2	P98095	1184 aa		23.65	■■□□□ 1.38
DDX39A-209	ENST00000589318	CFAP43	Q8NDM7	1665 aa		23.65	■■□□□ 1.38
DDX39A-209	ENST00000589318	DISP1	Q96F81	1524 aa		23.63	■■□□□ 1.37
DDX39A-209	ENST00000589318	CHD1	O14646	1710 aa		23.63	■■□□□ 1.37
DDX39A-209	ENST00000589318	KIAA0556	O60303	1618 aa		23.62	■■□□□ 1.37
DDX39A-209	ENST00000589318	MYT1	Q01538	1121 aa		23.62	■■□□□ 1.37
DDX39A-209	ENST00000589318	LRRIQ1	Q96JM4	1722 aa		23.59	■■□□□ 1.37
DDX39A-209	ENST00000589318	LRRC9	Q6ZRR7	1453 aa		23.55	■■□□□ 1.36
DDX39A-209	ENST00000589318	ATP1B4	Q9UN42	357 aa	Predicted RBP	23.49	■■□□□ 1.35
DDX39A-209	ENST00000589318	JPH4	Q96JJ6	628 aa		23.48	■■□□□ 1.35
DDX39A-209	ENST00000589318	HECW1	Q76N89	1606 aa		23.46	■■□□□ 1.35
DDX39A-209	ENST00000589318	RRBP1	Q9P2E9	1410 aa	Known RBP	23.42	■■□□□ 1.34
DDX39A-209	ENST00000589318	CARMIL2	Q6F5E8	1435 aa		23.41	■■□□□ 1.34
DDX39A-209	ENST00000589318	SHROOM2	Q13796	1616 aa		23.41	■■□□□ 1.34
DDX39A-209	ENST00000589318	CCDC18	Q5T9S5	1454 aa		23.4	■■□□□ 1.34
DDX39A-209	ENST00000589318	RAPGEF6	Q8TEU7	1601 aa		23.39	■■□□□ 1.33
DDX39A-209	ENST00000589318	EPRS	P07814	1512 aa	Known RBP	23.38	■■□□□ 1.33
DDX39A-209	ENST00000589318	MAGI3	Q5TCQ9	1506 aa		23.35	■■□□□ 1.33
DDX39A-209	ENST00000589318	CLASP1	Q7Z460	1538 aa		23.35	■■□□□ 1.33
DDX39A-209	ENST00000589318	PHLDB1	Q86UU1	1377 aa		23.35	■■□□□ 1.33
DDX39A-209	ENST00000589318	NUP153	P49790	1475 aa	Known RBP	23.34	■■□□□ 1.33
DDX39A-209	ENST00000589318	CDK13	Q14004	1512 aa	Known RBP	23.34	■■□□□ 1.33
DDX39A-209	ENST00000589318	PRG4	Q92954	1404 aa	Predicted RBP	23.34	■■□□□ 1.33
DDX39A-209	ENST00000589318	ZEB1	P37275	1124 aa	Predicted RBP	23.33	■■□□□ 1.33
DDX39A-209	ENST00000589318	EHBP1L1	Q8N3D4	1523 aa		23.32	■■□□□ 1.32
DDX39A-209	ENST00000589318	MTUS2	Q5JR59	1369 aa		23.31	■■□□□ 1.32
DDX39A-209	ENST00000589318	PLB1	Q6P1J6	1458 aa		23.31	■■□□□ 1.32
DDX39A-209	ENST00000589318	CCNB3	Q8WWL7	1395 aa		23.31	■■□□□ 1.32
DDX39A-209	ENST00000589318	ABCA8	O94911	1581 aa		23.28	■■□□□ 1.32
DDX39A-209	ENST00000589318	SUPT6H	Q7KZ85	1726 aa	Known RBP	23.27	■■□□□ 1.32
DDX39A-209	ENST00000589318	HNRNPUL2	Q1KMD3	747 aa	Known RBP	23.26	■■□□□ 1.31
DDX39A-209	ENST00000589318	ARHGEF11	O15085	1522 aa		23.25	■■□□□ 1.31
DDX39A-209	ENST00000589318	ERCC6L2	Q5T890	1561 aa		23.24	■■□□□ 1.31
DDX39A-209	ENST00000589318	NCOA2	Q15596	1464 aa		23.24	■■□□□ 1.31
DDX39A-209	ENST00000589318	ARID3C	A6NKF2	412 aa		23.2	■■□□□ 1.3
DDX39A-209	ENST00000589318	PTPRG	P23470	1445 aa		23.19	■■□□□ 1.3
DDX39A-209	ENST00000589318	FGD6	Q6ZV73	1430 aa		23.17	■■□□□ 1.3
DDX39A-209	ENST00000589318	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	23.16	■■□□□ 1.3
DDX39A-209	ENST00000589318	MYOM3	Q5VTT5	1437 aa		23.15	■■□□□ 1.3
DDX39A-209	ENST00000589318	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	23.14	■■□□□ 1.29	4e-9	■□□□□ 10.2
DDX39A-209	ENST00000589318	ATP10B	O94823	1461 aa		23.1	■■□□□ 1.29
DDX39A-209	ENST00000589318	TRO	Q12816	1431 aa	Predicted RBP	23.08	■■□□□ 1.29
DDX39A-209	ENST00000589318	UACA	Q9BZF9	1416 aa		23.08	■■□□□ 1.28
DDX39A-209	ENST00000589318	ADCY10	Q96PN6	1610 aa		23.07	■■□□□ 1.28
DDX39A-209	ENST00000589318	FAM50A	Q14320	339 aa	Known RBP	23.06	■■□□□ 1.28
DDX39A-209	ENST00000589318	CDK11A	Q9UQ88	783 aa	Predicted RBP	23.06	■■□□□ 1.28
DDX39A-209	ENST00000589318	SCAF1	Q9H7N4	1312 aa	Known RBP	23.06	■■□□□ 1.28
DDX39A-209	ENST00000589318	PTPN23	Q9H3S7	1636 aa		23.05	■■□□□ 1.28
DDX39A-209	ENST00000589318	CCER1	Q8TC90	406 aa	Predicted RBP	23.04	■■□□□ 1.28
DDX39A-209	ENST00000589318	ABCC2	Q92887	1545 aa		23.03	■■□□□ 1.28
DDX39A-209	ENST00000589318	ITGAE	P38570	1179 aa		23.03	■■□□□ 1.28
DDX39A-209	ENST00000589318	KIF14	Q15058	1648 aa		23.03	■■□□□ 1.28
DDX39A-209	ENST00000589318	TCOF1	Q13428	1488 aa	Known RBP	23.02	■■□□□ 1.28
DDX39A-209	ENST00000589318	MIA2	Q96PC5	1412 aa		23	■■□□□ 1.27
DDX39A-209	ENST00000589318	OSCAR	Q8IYS5	282 aa		22.99	■■□□□ 1.27
DDX39A-209	ENST00000589318	UHRF1BP1L	A0JNW5	1464 aa		22.96	■■□□□ 1.27
DDX39A-209	ENST00000589318	PTPRK	Q15262	1439 aa		22.95	■■□□□ 1.26
DDX39A-209	ENST00000589318	PLEKHD1	A6NEE1	506 aa		22.94	■■□□□ 1.26
DDX39A-209	ENST00000589318	ITSN2	Q9NZM3	1697 aa		22.93	■■□□□ 1.26
DDX39A-209	ENST00000589318	ABCC10	Q5T3U5	1492 aa		22.92	■■□□□ 1.26
DDX39A-209	ENST00000589318	GPATCH8	Q9UKJ3	1502 aa	Known RBP	22.91	■■□□□ 1.26
DDX39A-209	ENST00000589318	ZCCHC11	Q5TAX3	1644 aa	Known RBP	22.9	■■□□□ 1.26
DDX39A-209	ENST00000589318	CDC42BPA	Q5VT25	1732 aa		22.89	■■□□□ 1.26
DDX39A-209	ENST00000589318	RAB3GAP2	Q9H2M9	1393 aa		22.89	■■□□□ 1.25
DDX39A-209	ENST00000589318	SETD5	Q9C0A6	1442 aa		22.89	■■□□□ 1.25
DDX39A-209	ENST00000589318	KDM5B	Q9UGL1	1544 aa		22.89	■■□□□ 1.25
DDX39A-209	ENST00000589318	DHX57	Q6P158	1386 aa	Known RBP	22.86	■■□□□ 1.25
DDX39A-209	ENST00000589318	DNMT1	P26358	1616 aa	Known RBP	22.82	■■□□□ 1.24
DDX39A-209	ENST00000589318	ZNF644	Q9H582	1327 aa	Predicted RBP	22.82	■■□□□ 1.24
DDX39A-209	ENST00000589318	HFM1	A2PYH4	1435 aa		22.82	■■□□□ 1.24
DDX39A-209	ENST00000589318	CAMSAP2	Q08AD1	1489 aa		22.81	■■□□□ 1.24
DDX39A-209	ENST00000589318	CFDP1	Q9UEE9	299 aa	Predicted RBP	22.78	■■□□□ 1.24
DDX39A-209	ENST00000589318	TTC37	Q6PGP7	1564 aa		22.78	■■□□□ 1.24

Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms