RNA–Protein interactions for RNA: ENST00000587201.5

TPM4-206, Transcript of tropomyosin 4, humanhuman

TSL 2

Gene TPM4, Length 877 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-206ENST00000587201 CARMIL1Q5VZK9 1371 aa30.28■■■□□ 2.44
TPM4-206ENST00000587201 TRHP20396 242 aaPredicted RBP30.26■■■□□ 2.43
TPM4-206ENST00000587201 PRG4Q92954 1404 aaPredicted RBP30.26■■■□□ 2.43
TPM4-206ENST00000587201 KIAA0586Q9BVV6 1533 aa30.19■■■□□ 2.42
TPM4-206ENST00000587201 RAPGEF2Q9Y4G8 1499 aa30.04■■■□□ 2.4
TPM4-206ENST00000587201 IQGAP2Q13576 1575 aa29.95■■■□□ 2.39
TPM4-206ENST00000587201 CARMIL2Q6F5E8 1435 aa29.91■■■□□ 2.38
TPM4-206ENST00000587201 NPM1P06748 294 aaKnown RBP eCLIP29.86■■■□□ 2.37
TPM4-206ENST00000587201 TTBK1Q5TCY1 1321 aaPredicted RBP29.86■■■□□ 2.37
TPM4-206ENST00000587201 PTPRGP23470 1445 aa29.85■■■□□ 2.37
TPM4-206ENST00000587201 TNIKQ9UKE5 1360 aa29.84■■■□□ 2.37
TPM4-206ENST00000587201 PRXQ9BXM0 1461 aa29.82■■■□□ 2.36
TPM4-206ENST00000587201 ADCY10Q96PN6 1610 aa29.82■■■□□ 2.36
TPM4-206ENST00000587201 UGGT2Q9NYU1 1516 aa29.78■■■□□ 2.36
TPM4-206ENST00000587201 DISP1Q96F81 1524 aa29.77■■■□□ 2.36
TPM4-206ENST00000587201 CSRNP3Q8WYN3 585 aa29.75■■■□□ 2.35
TPM4-206ENST00000587201 CTTNBP2Q8WZ74 1663 aa29.74■■■□□ 2.35
TPM4-206ENST00000587201 MAPKBP1O60336 1514 aa29.7■■■□□ 2.34
TPM4-206ENST00000587201 KIAA0556O60303 1618 aa29.68■■■□□ 2.34
TPM4-206ENST00000587201 EEA1Q15075 1411 aa29.68■■■□□ 2.34
TPM4-206ENST00000587201 KIF13AQ9H1H9 1805 aa29.64■■■□□ 2.34
TPM4-206ENST00000587201 ABCC10Q5T3U5 1492 aa29.64■■■□□ 2.34
TPM4-206ENST00000587201 FAM69CQ0P6D2 419 aa29.64■■■□□ 2.34
TPM4-206ENST00000587201 UACAQ9BZF9 1416 aa29.63■■■□□ 2.33
TPM4-206ENST00000587201 ABCC2Q92887 1545 aa29.61■■■□□ 2.33
TPM4-206ENST00000587201 FAM9AQ8IZU1 332 aaPredicted RBP29.61■■■□□ 2.33
TPM4-206ENST00000587201 GOLGA3Q08378 1498 aa29.61■■■□□ 2.33
TPM4-206ENST00000587201 UHRF1BP1LA0JNW5 1464 aa29.6■■■□□ 2.33
TPM4-206ENST00000587201 CHIC1Q5VXU3 224 aa29.58■■■□□ 2.33
TPM4-206ENST00000587201 DIP2BQ9P265 1576 aa29.56■■■□□ 2.32
TPM4-206ENST00000587201 ASXL2Q76L83 1435 aa29.47■■■□□ 2.31
TPM4-206ENST00000587201 KDM5BQ9UGL1 1544 aa29.46■■■□□ 2.31
TPM4-206ENST00000587201 PLB1Q6P1J6 1458 aa29.46■■■□□ 2.31
TPM4-206ENST00000587201 P3H3Q8IVL6 736 aa29.43■■■□□ 2.3
TPM4-206ENST00000587201 ZCCHC11Q5TAX3 1644 aaKnown RBP29.4■■■□□ 2.3
TPM4-206ENST00000587201 ABCA8O94911 1581 aa29.38■■■□□ 2.29
TPM4-206ENST00000587201 KIF21BO75037 1637 aa29.38■■■□□ 2.29
TPM4-206ENST00000587201 RANGAP1P46060 587 aaPredicted RBP29.36■■■□□ 2.29
TPM4-206ENST00000587201 SAMD9Q5K651 1589 aa29.34■■■□□ 2.29
TPM4-206ENST00000587201 TSPOAP1O95153 1857 aa29.34■■■□□ 2.29
TPM4-206ENST00000587201 GLI2P10070 1586 aa29.32■■■□□ 2.28
TPM4-206ENST00000587201 EPRSP07814 1512 aaKnown RBP29.3■■■□□ 2.28
TPM4-206ENST00000587201 EHMT2Q96KQ7 1210 aa29.29■■■□□ 2.28
TPM4-206ENST00000587201 WDR7Q9Y4E6 1490 aa29.25■■■□□ 2.27
TPM4-206ENST00000587201 UBTFP17480 764 aaKnown RBP29.23■■■□□ 2.27
TPM4-206ENST00000587201 ARID3CA6NKF2 412 aa29.22■■■□□ 2.27
TPM4-206ENST00000587201 KDM6BO15054 1643 aa29.21■■■□□ 2.27
TPM4-206ENST00000587201 FHOD3Q2V2M9 1422 aa29.2■■■□□ 2.27
TPM4-206ENST00000587201 KCNH8Q96L42 1107 aa29.17■■■□□ 2.26
TPM4-206ENST00000587201 PPRC1Q5VV67 1664 aaKnown RBP29.17■■■□□ 2.26
TPM4-206ENST00000587201 RAPGEF6Q8TEU7 1601 aa29.16■■■□□ 2.26
TPM4-206ENST00000587201 MAP3K4Q9Y6R4 1608 aa29.16■■■□□ 2.26
TPM4-206ENST00000587201 ATP10BO94823 1461 aa29.16■■■□□ 2.26
TPM4-206ENST00000587201 EFCAB5A4FU69 1503 aa29.15■■■□□ 2.26
TPM4-206ENST00000587201 TEX14Q8IWB6 1497 aa29.1■■■□□ 2.25
TPM4-206ENST00000587201 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.09■■■□□ 2.25
TPM4-206ENST00000587201 HNRNPUL2Q1KMD3 747 aaKnown RBP29.09■■■□□ 2.25
TPM4-206ENST00000587201 CD109Q6YHK3 1445 aa29.05■■■□□ 2.24
TPM4-206ENST00000587201 NUP153P49790 1475 aaKnown RBP29.04■■■□□ 2.24
TPM4-206ENST00000587201 AEBP2Q6ZN18 517 aaPredicted RBP29.04■■■□□ 2.24
TPM4-206ENST00000587201 CFAP43Q8NDM7 1665 aa29.02■■■□□ 2.24
TPM4-206ENST00000587201 MAGI3Q5TCQ9 1506 aa28.99■■■□□ 2.23
TPM4-206ENST00000587201 ARHGAP35Q9NRY4 1499 aa28.96■■■□□ 2.23
TPM4-206ENST00000587201 COL17A1Q9UMD9 1497 aaPredicted RBP28.96■■■□□ 2.23
TPM4-206ENST00000587201 PLEKHD1A6NEE1 506 aa28.91■■■□□ 2.22
TPM4-206ENST00000587201 FMN1Q68DA7 1419 aa28.91■■■□□ 2.22
TPM4-206ENST00000587201 ABCA9Q8IUA7 1624 aa28.89■■■□□ 2.22
TPM4-206ENST00000587201 ATP1B4Q9UN42 357 aaPredicted RBP28.88■■■□□ 2.21
TPM4-206ENST00000587201 CDK13Q14004 1512 aaKnown RBP28.82■■■□□ 2.2
TPM4-206ENST00000587201 HECW1Q76N89 1606 aa28.81■■■□□ 2.2
TPM4-206ENST00000587201 PHLDB1Q86UU1 1377 aa28.75■■■□□ 2.19
TPM4-206ENST00000587201 ARAP3Q8WWN8 1544 aa28.74■■■□□ 2.19
TPM4-206ENST00000587201 KDM4FA0A1W2PPD8 638 aa28.73■■■□□ 2.19
TPM4-206ENST00000587201 NEO1Q92859 1461 aa28.71■■■□□ 2.19
TPM4-206ENST00000587201 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.7■■■□□ 2.191e-6■■□□□ 14.3
TPM4-206ENST00000587201 CDK11AQ9UQ88 783 aaPredicted RBP28.7■■■□□ 2.18
TPM4-206ENST00000587201 CLIP1P30622 1438 aa28.69■■■□□ 2.18
TPM4-206ENST00000587201 TTC37Q6PGP7 1564 aa28.65■■■□□ 2.18
TPM4-206ENST00000587201 CASKIN1Q8WXD9 1431 aa28.64■■■□□ 2.18
TPM4-206ENST00000587201 PCF11O94913 1555 aaKnown RBP28.62■■■□□ 2.17
TPM4-206ENST00000587201 RAPGEF3O95398 923 aa28.62■■■□□ 2.17
TPM4-206ENST00000587201 FANCAO15360 1455 aa28.6■■■□□ 2.17
TPM4-206ENST00000587201 ADGRL1O94910 1474 aa28.6■■■□□ 2.17
TPM4-206ENST00000587201 LRRIQ1Q96JM4 1722 aa28.6■■■□□ 2.17
TPM4-206ENST00000587201 AKNAQ7Z591 1439 aa28.59■■■□□ 2.17
TPM4-206ENST00000587201 TROQ12816 1431 aaPredicted RBP28.58■■■□□ 2.17
TPM4-206ENST00000587201 CFAP74Q9C0B2 1584 aa28.58■■■□□ 2.17
TPM4-206ENST00000587201 CCDC18Q5T9S5 1454 aa28.57■■■□□ 2.16
TPM4-206ENST00000587201 PLCH2O75038 1416 aa28.54■■■□□ 2.16
TPM4-206ENST00000587201 KIF14Q15058 1648 aa28.54■■■□□ 2.16
TPM4-206ENST00000587201 DENND4BO75064 1496 aaPredicted RBP28.53■■■□□ 2.16
TPM4-206ENST00000587201 FYCO1Q9BQS8 1478 aa28.53■■■□□ 2.16
TPM4-206ENST00000587201 FRMPD1Q5SYB0 1578 aa28.51■■■□□ 2.15
TPM4-206ENST00000587201 MYO5CQ9NQX4 1742 aa28.47■■■□□ 2.15
TPM4-206ENST00000587201 EFCAB2Q5VUJ9 269 aa28.46■■■□□ 2.15
TPM4-206ENST00000587201 CEP162Q5TB80 1403 aa28.45■■■□□ 2.15
TPM4-206ENST00000587201 RICTORQ6R327 1708 aa28.44■■■□□ 2.14
TPM4-206ENST00000587201 SCAPERQ9BY12 1400 aa28.43■■■□□ 2.14
TPM4-206ENST00000587201 ARHGAP5Q13017 1502 aa28.4■■■□□ 2.14
TPM4-206ENST00000587201 LOC105371045A0A1W2PR82 267 aa28.4■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms