RNA–Protein interactions for RNA: ENST00000587201.5

TPM4-206, Transcript of tropomyosin 4, humanhuman

TSL 2

Gene TPM4, Length 877 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-206ENST00000587201 NISCHQ9Y2I1 1504 aa43.49■■■■■ 4.55
TPM4-206ENST00000587201 CCDC180Q9P1Z9 1646 aa38.79■■■■□ 3.8
TPM4-206ENST00000587201 ABCC9O60706 1549 aa38.39■■■■□ 3.74
TPM4-206ENST00000587201 RB1CC1Q8TDY2 1594 aa36.73■■■■□ 3.47
TPM4-206ENST00000587201 DCAF8L2P0C7V8 631 aa36.61■■■■□ 3.45
TPM4-206ENST00000587201 NACADO15069 1562 aa36.58■■■■□ 3.45
TPM4-206ENST00000587201 MYO15BQ96JP2 1530 aa36.22■■■■□ 3.39
TPM4-206ENST00000587201 ZCCHC6Q5VYS8 1495 aaKnown RBP36.14■■■■□ 3.38
TPM4-206ENST00000587201 DCAF1Q9Y4B6 1507 aa35.93■■■■□ 3.34
TPM4-206ENST00000587201 UNC13AQ9UPW8 1703 aa35.84■■■■□ 3.33
TPM4-206ENST00000587201 PABPN1Q86U42 306 aaKnown RBP eCLIP35.84■■■■□ 3.33
TPM4-206ENST00000587201 BICRAQ9NZM4 1560 aa35.6■■■■□ 3.29
TPM4-206ENST00000587201 DNAJC5BQ9UF47 199 aa35.57■■■■□ 3.28
TPM4-206ENST00000587201 SCRIBQ14160 1630 aa35.42■■■■□ 3.26
TPM4-206ENST00000587201 SHROOM4Q9ULL8 1493 aa35.19■■■■□ 3.22
TPM4-206ENST00000587201 EIF4G1Q04637 1599 aaKnown RBP34.72■■■■□ 3.15
TPM4-206ENST00000587201 CC2D2AQ9P2K1 1620 aa34.67■■■■□ 3.14
TPM4-206ENST00000587201 CECR2Q9BXF3 1484 aa34.52■■■■□ 3.12
TPM4-206ENST00000587201 SMARCA4P51532 1647 aa33.82■■■■□ 3
TPM4-206ENST00000587201 NCAPD3P42695 1498 aa33.76■■■■□ 3
TPM4-206ENST00000587201 ATAD2BQ9ULI0 1458 aa33.74■■■□□ 2.99
TPM4-206ENST00000587201 BAZ1AQ9NRL2 1556 aaPredicted RBP33.73■■■□□ 2.99
TPM4-206ENST00000587201 SMARCA2P51531 1590 aa33.68■■■□□ 2.98
TPM4-206ENST00000587201 HMGXB3Q12766 1538 aa33.55■■■□□ 2.96
TPM4-206ENST00000587201 MROH2BQ7Z745 1585 aa33.52■■■□□ 2.96
TPM4-206ENST00000587201 PEG3Q9GZU2 1588 aa33.47■■■□□ 2.95
TPM4-206ENST00000587201 BAZ1BQ9UIG0 1483 aaKnown RBP33.46■■■□□ 2.95
TPM4-206ENST00000587201 WIZO95785 1651 aa33.14■■■□□ 2.9
TPM4-206ENST00000587201 ERCC6Q03468 1493 aa33.13■■■□□ 2.89
TPM4-206ENST00000587201 NESP48681 1621 aa33.1■■■□□ 2.89
TPM4-206ENST00000587201 RSF1Q96T23 1441 aaPredicted RBP33■■■□□ 2.87
TPM4-206ENST00000587201 LAMC3Q9Y6N6 1575 aa32.93■■■□□ 2.86
TPM4-206ENST00000587201 CUX2O14529 1486 aa32.86■■■□□ 2.85
TPM4-206ENST00000587201 CADPSQ9ULU8 1353 aa32.79■■■□□ 2.84
TPM4-206ENST00000587201 TOP2AP11388 1531 aaKnown RBP32.76■■■□□ 2.83
TPM4-206ENST00000587201 PDS5BQ9NTI5 1447 aa32.76■■■□□ 2.83
TPM4-206ENST00000587201 KIF21AQ7Z4S6 1674 aa32.66■■■□□ 2.82
TPM4-206ENST00000587201 THOC2Q8NI27 1593 aaKnown RBP32.64■■■□□ 2.82
TPM4-206ENST00000587201 CFTRP13569 1480 aa32.49■■■□□ 2.79
TPM4-206ENST00000587201 MRC2Q9UBG0 1479 aa32.43■■■□□ 2.78
TPM4-206ENST00000587201 FANCD2Q9BXW9 1451 aa32.41■■■□□ 2.78
TPM4-206ENST00000587201 CEP164Q9UPV0 1460 aa32.41■■■□□ 2.78
TPM4-206ENST00000587201 CCDC88BA6NC98 1476 aa32.4■■■□□ 2.78
TPM4-206ENST00000587201 DNAJC5Q9H3Z4 198 aa32.32■■■□□ 2.76
TPM4-206ENST00000587201 WDR62O43379 1518 aa32.31■■■□□ 2.76
TPM4-206ENST00000587201 PRDM2Q13029 1718 aa32.17■■■□□ 2.74
TPM4-206ENST00000587201 URB2Q14146 1524 aaKnown RBP32.1■■■□□ 2.73
TPM4-206ENST00000587201 SUPT5HO00267 1087 aaKnown RBP31.98■■■□□ 2.71
TPM4-206ENST00000587201 TOPBP1Q92547 1522 aa31.85■■■□□ 2.69
TPM4-206ENST00000587201 ABCC8Q09428 1581 aa31.81■■■□□ 2.68
TPM4-206ENST00000587201 DNMBPQ6XZF7 1577 aa31.77■■■□□ 2.68
TPM4-206ENST00000587201 IFT140Q96RY7 1462 aa31.74■■■□□ 2.67
TPM4-206ENST00000587201 ZNF608Q9ULD9 1512 aaPredicted RBP31.64■■■□□ 2.66
TPM4-206ENST00000587201 POLA1P09884 1462 aaPredicted RBP31.55■■■□□ 2.64
TPM4-206ENST00000587201 TARBP1Q13395 1621 aaKnown RBP31.49■■■□□ 2.63
TPM4-206ENST00000587201 OSCARQ8IYS5 282 aa31.49■■■□□ 2.63
TPM4-206ENST00000587201 EIF4G3O43432 1585 aaKnown RBP31.47■■■□□ 2.63
TPM4-206ENST00000587201 CUX1P39880 1505 aa31.46■■■□□ 2.63
TPM4-206ENST00000587201 SOGA1O94964 1423 aa31.44■■■□□ 2.62
TPM4-206ENST00000587201 RAD54L2Q9Y4B4 1467 aa31.44■■■□□ 2.62
TPM4-206ENST00000587201 AQRO60306 1485 aaKnown RBP eCLIP31.43■■■□□ 2.628e-7■■■■□ 21.4
TPM4-206ENST00000587201 FGD5Q6ZNL6 1462 aa31.43■■■□□ 2.62
TPM4-206ENST00000587201 TDRD9Q8NDG6 1382 aaKnown RBP31.31■■■□□ 2.6
TPM4-206ENST00000587201 WDR97A6NE52 1622 aa31.22■■■□□ 2.59
TPM4-206ENST00000587201 FBLN2P98095 1184 aa31.18■■■□□ 2.58
TPM4-206ENST00000587201 TRIM41Q8WV44 630 aa31.16■■■□□ 2.58
TPM4-206ENST00000587201 WRNQ14191 1432 aaPredicted RBP eCLIP31.15■■■□□ 2.58
TPM4-206ENST00000587201 CHD1O14646 1710 aa31.14■■■□□ 2.58
TPM4-206ENST00000587201 SNAPC4Q5SXM2 1469 aa31.12■■■□□ 2.57
TPM4-206ENST00000587201 GRIN2BQ13224 1484 aa31.1■■■□□ 2.57
TPM4-206ENST00000587201 ABCA10Q8WWZ4 1543 aa31.09■■■□□ 2.57
TPM4-206ENST00000587201 TOP2BQ02880 1626 aa31.09■■■□□ 2.57
TPM4-206ENST00000587201 BIVM-ERCC5R4GMW8 1640 aa31.07■■■□□ 2.56
TPM4-206ENST00000587201 SYNJ1O43426 1573 aa31.07■■■□□ 2.56
TPM4-206ENST00000587201 GAPVD1Q14C86 1478 aa31.06■■■□□ 2.56
TPM4-206ENST00000587201 MAGI1Q96QZ7 1491 aaPredicted RBP31.05■■■□□ 2.56
TPM4-206ENST00000587201 CHMP7Q8WUX9 453 aaPredicted RBP31.02■■■□□ 2.56
TPM4-206ENST00000587201 RIMBP3CA6NJZ7 1639 aa30.98■■■□□ 2.55
TPM4-206ENST00000587201 RIMBP3BA6NNM3 1639 aa30.98■■■□□ 2.55
TPM4-206ENST00000587201 ABCA5Q8WWZ7 1642 aa30.98■■■□□ 2.55
TPM4-206ENST00000587201 RIMBP3Q9UFD9 1639 aa30.98■■■□□ 2.55
TPM4-206ENST00000587201 PBRM1Q86U86 1689 aa30.98■■■□□ 2.55
TPM4-206ENST00000587201 ARHGEF11O15085 1522 aa30.94■■■□□ 2.54
TPM4-206ENST00000587201 SYNJ2O15056 1496 aa30.94■■■□□ 2.54
TPM4-206ENST00000587201 CLASP1Q7Z460 1538 aa30.79■■■□□ 2.52
TPM4-206ENST00000587201 CYB5RLQ6IPT4 315 aa30.74■■■□□ 2.51
TPM4-206ENST00000587201 ADAMTS12P58397 1594 aa30.72■■■□□ 2.51
TPM4-206ENST00000587201 ERICH3Q5RHP9 1530 aa30.71■■■□□ 2.51
TPM4-206ENST00000587201 GRIN2AQ12879 1464 aa30.7■■■□□ 2.5
TPM4-206ENST00000587201 FHAD1B1AJZ9 1412 aa30.68■■■□□ 2.5
TPM4-206ENST00000587201 ARAP1Q96P48 1450 aa30.67■■■□□ 2.5
TPM4-206ENST00000587201 NUP160Q12769 1436 aa30.56■■■□□ 2.48
TPM4-206ENST00000587201 CEP170Q5SW79 1584 aa30.55■■■□□ 2.48
TPM4-206ENST00000587201 KIF27Q86VH2 1401 aa30.53■■■□□ 2.48
TPM4-206ENST00000587201 IGF1RP08069 1367 aa30.44■■■□□ 2.46
TPM4-206ENST00000587201 ERCC6L2Q5T890 1561 aa30.37■■■□□ 2.45
TPM4-206ENST00000587201 CUL7Q14999 1698 aa30.36■■■□□ 2.45
TPM4-206ENST00000587201 SHROOM2Q13796 1616 aa30.35■■■□□ 2.45
TPM4-206ENST00000587201 JPH4Q96JJ6 628 aa30.3■■■□□ 2.44
TPM4-206ENST00000587201 RUSC2Q8N2Y8 1516 aa30.28■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms