RNA–Protein interactions for RNA: ENST00000585241.5

SS18-226, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 774 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-226ENST00000585241 CEP170Q5SW79 1584 aa26.12■■□□□ 1.77
SS18-226ENST00000585241 FBLN2P98095 1184 aa26.09■■□□□ 1.77
SS18-226ENST00000585241 KIAA0586Q9BVV6 1533 aa26.07■■□□□ 1.76
SS18-226ENST00000585241 CEP162Q5TB80 1403 aa26.03■■□□□ 1.76
SS18-226ENST00000585241 IQGAP2Q13576 1575 aa26.02■■□□□ 1.76
SS18-226ENST00000585241 CLASP1Q7Z460 1538 aa25.95■■□□□ 1.74
SS18-226ENST00000585241 CLIP1P30622 1438 aa25.95■■□□□ 1.74
SS18-226ENST00000585241 UGGT2Q9NYU1 1516 aa25.94■■□□□ 1.74
SS18-226ENST00000585241 EFCAB5A4FU69 1503 aa25.91■■□□□ 1.74
SS18-226ENST00000585241 SAMD9Q5K651 1589 aa25.89■■□□□ 1.73
SS18-226ENST00000585241 ARHGAP35Q9NRY4 1499 aa25.88■■□□□ 1.73
SS18-226ENST00000585241 SHROOM2Q13796 1616 aa25.88■■□□□ 1.73
SS18-226ENST00000585241 OSCARQ8IYS5 282 aa25.83■■□□□ 1.73
SS18-226ENST00000585241 JPH4Q96JJ6 628 aa25.82■■□□□ 1.72
SS18-226ENST00000585241 DISP1Q96F81 1524 aa25.8■■□□□ 1.72
SS18-226ENST00000585241 ARAP1Q96P48 1450 aa25.79■■□□□ 1.72
SS18-226ENST00000585241 KIAA0556O60303 1618 aa25.78■■□□□ 1.72
SS18-226ENST00000585241 RANGAP1P46060 587 aaPredicted RBP25.77■■□□□ 1.72
SS18-226ENST00000585241 CARMIL2Q6F5E8 1435 aa25.72■■□□□ 1.71
SS18-226ENST00000585241 FHOD3Q2V2M9 1422 aa25.71■■□□□ 1.71
SS18-226ENST00000585241 PRG4Q92954 1404 aaPredicted RBP25.71■■□□□ 1.71
SS18-226ENST00000585241 VPS8Q8N3P4 1428 aa25.68■■□□□ 1.7
SS18-226ENST00000585241 P3H3Q8IVL6 736 aa25.63■■□□□ 1.69
SS18-226ENST00000585241 FMN1Q68DA7 1419 aa25.63■■□□□ 1.69
SS18-226ENST00000585241 ERCC6L2Q5T890 1561 aa25.62■■□□□ 1.69
SS18-226ENST00000585241 CASKIN1Q8WXD9 1431 aa25.53■■□□□ 1.68
SS18-226ENST00000585241 FYCO1Q9BQS8 1478 aa25.52■■□□□ 1.68
SS18-226ENST00000585241 PCF11O94913 1555 aaKnown RBP25.52■■□□□ 1.68
SS18-226ENST00000585241 PTPRGP23470 1445 aa25.5■■□□□ 1.67
SS18-226ENST00000585241 ARHGEF11O15085 1522 aa25.47■■□□□ 1.67
SS18-226ENST00000585241 ABCA8O94911 1581 aa25.47■■□□□ 1.67
SS18-226ENST00000585241 RAPGEF6Q8TEU7 1601 aa25.45■■□□□ 1.66
SS18-226ENST00000585241 PLB1Q6P1J6 1458 aa25.42■■□□□ 1.66
SS18-226ENST00000585241 HECW1Q76N89 1606 aa25.42■■□□□ 1.66
SS18-226ENST00000585241 MAP3K1Q13233 1512 aa25.4■■□□□ 1.66
SS18-226ENST00000585241 UACAQ9BZF9 1416 aa25.38■■□□□ 1.65
SS18-226ENST00000585241 NUP153P49790 1475 aaKnown RBP25.38■■□□□ 1.65
SS18-226ENST00000585241 RIMBP3CA6NJZ7 1639 aa25.37■■□□□ 1.65
SS18-226ENST00000585241 RIMBP3BA6NNM3 1639 aa25.37■■□□□ 1.65
SS18-226ENST00000585241 RIMBP3Q9UFD9 1639 aa25.37■■□□□ 1.65
SS18-226ENST00000585241 UHRF1BP1LA0JNW5 1464 aa25.36■■□□□ 1.65
SS18-226ENST00000585241 ABCC2Q92887 1545 aa25.35■■□□□ 1.65
SS18-226ENST00000585241 TTBK1Q5TCY1 1321 aaPredicted RBP25.35■■□□□ 1.65
SS18-226ENST00000585241 CCDC18Q5T9S5 1454 aa25.34■■□□□ 1.65
SS18-226ENST00000585241 LRRIQ1Q96JM4 1722 aa25.34■■□□□ 1.65
SS18-226ENST00000585241 CFAP43Q8NDM7 1665 aa25.33■■□□□ 1.65
SS18-226ENST00000585241 EPRSP07814 1512 aaKnown RBP25.32■■□□□ 1.64
SS18-226ENST00000585241 TIAM1Q13009 1591 aa25.32■■□□□ 1.64
SS18-226ENST00000585241 APLP2Q06481 763 aa25.26■■□□□ 1.63
SS18-226ENST00000585241 ADCY10Q96PN6 1610 aa25.26■■□□□ 1.63
SS18-226ENST00000585241 CDK13Q14004 1512 aaKnown RBP25.24■■□□□ 1.63
SS18-226ENST00000585241 ATP1B4Q9UN42 357 aaPredicted RBP25.24■■□□□ 1.63
SS18-226ENST00000585241 KDM5BQ9UGL1 1544 aa25.23■■□□□ 1.63
SS18-226ENST00000585241 ATP10BO94823 1461 aa25.23■■□□□ 1.63
SS18-226ENST00000585241 LRRC9Q6ZRR7 1453 aa25.2■■□□□ 1.62
SS18-226ENST00000585241 KANK4Q5T7N3 995 aaPredicted RBP25.15■■□□□ 1.62
SS18-226ENST00000585241 MAGI3Q5TCQ9 1506 aa25.15■■□□□ 1.62
SS18-226ENST00000585241 EHBP1L1Q8N3D4 1523 aa25.15■■□□□ 1.62
SS18-226ENST00000585241 ZCCHC11Q5TAX3 1644 aaKnown RBP25.15■■□□□ 1.62
SS18-226ENST00000585241 ARID3CA6NKF2 412 aa25.11■■□□□ 1.61
SS18-226ENST00000585241 CYB5RLQ6IPT4 315 aa25.1■■□□□ 1.61
SS18-226ENST00000585241 MTUS2Q5JR59 1369 aa25.09■■□□□ 1.61
SS18-226ENST00000585241 DNAJC5Q9H3Z4 198 aa25.09■■□□□ 1.61
SS18-226ENST00000585241 CDK11AQ9UQ88 783 aaPredicted RBP25.09■■□□□ 1.61
SS18-226ENST00000585241 TROQ12816 1431 aaPredicted RBP25.09■■□□□ 1.61
SS18-226ENST00000585241 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.04■■□□□ 1.6
SS18-226ENST00000585241 HNRNPUL2Q1KMD3 747 aaKnown RBP25.04■■□□□ 1.6
SS18-226ENST00000585241 PPARGC1BQ86YN6 1023 aaKnown RBP25.03■■□□□ 1.6
SS18-226ENST00000585241 PLEKHD1A6NEE1 506 aa25.02■■□□□ 1.6
SS18-226ENST00000585241 SUPT6HQ7KZ85 1726 aaKnown RBP25.02■■□□□ 1.6
SS18-226ENST00000585241 MAPKBP1O60336 1514 aa24.98■■□□□ 1.59
SS18-226ENST00000585241 NCOA2Q15596 1464 aa24.98■■□□□ 1.59
SS18-226ENST00000585241 WDR7Q9Y4E6 1490 aa24.97■■□□□ 1.59
SS18-226ENST00000585241 NPM1P06748 294 aaKnown RBP eCLIP24.97■■□□□ 1.59
SS18-226ENST00000585241 KIF14Q15058 1648 aa24.96■■□□□ 1.59
SS18-226ENST00000585241 ASXL2Q76L83 1435 aa24.95■■□□□ 1.59
SS18-226ENST00000585241 ABCC10Q5T3U5 1492 aa24.92■■□□□ 1.58
SS18-226ENST00000585241 PHLDB1Q86UU1 1377 aa24.92■■□□□ 1.58
SS18-226ENST00000585241 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.86■■□□□ 1.57
SS18-226ENST00000585241 MYOM3Q5VTT5 1437 aa24.86■■□□□ 1.57
SS18-226ENST00000585241 RRBP1Q9P2E9 1410 aaKnown RBP24.85■■□□□ 1.57
SS18-226ENST00000585241 TTC37Q6PGP7 1564 aa24.82■■□□□ 1.56
SS18-226ENST00000585241 GPATCH8Q9UKJ3 1502 aaKnown RBP24.81■■□□□ 1.56
SS18-226ENST00000585241 ABCA9Q8IUA7 1624 aa24.81■■□□□ 1.56
SS18-226ENST00000585241 ITSN2Q9NZM3 1697 aa24.81■■□□□ 1.56
SS18-226ENST00000585241 CCNB3Q8WWL7 1395 aa24.8■■□□□ 1.56
SS18-226ENST00000585241 MIA2Q96PC5 1412 aa24.8■■□□□ 1.56
SS18-226ENST00000585241 FGD6Q6ZV73 1430 aa24.79■■□□□ 1.56
SS18-226ENST00000585241 CDC42BPAQ5VT25 1732 aa24.78■■□□□ 1.56
SS18-226ENST00000585241 TRIM26Q12899 539 aaPredicted RBP24.77■■□□□ 1.56
SS18-226ENST00000585241 KCNH8Q96L42 1107 aa24.77■■□□□ 1.56
SS18-226ENST00000585241 GLI2P10070 1586 aa24.76■■□□□ 1.55
SS18-226ENST00000585241 PREX2Q70Z35 1606 aa24.76■■□□□ 1.55
SS18-226ENST00000585241 ARAP3Q8WWN8 1544 aa24.75■■□□□ 1.55
SS18-226ENST00000585241 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.74■■□□□ 1.55
SS18-226ENST00000585241 TCOF1Q13428 1488 aaKnown RBP24.74■■□□□ 1.55
SS18-226ENST00000585241 MYO5CQ9NQX4 1742 aa24.74■■□□□ 1.55
SS18-226ENST00000585241 DIP2BQ9P265 1576 aa24.72■■□□□ 1.55
SS18-226ENST00000585241 PLCH2O75038 1416 aa24.71■■□□□ 1.55
SS18-226ENST00000585241 PTPN23Q9H3S7 1636 aa24.71■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms