RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-231ENST00000584063 CLIP1P30622 1438 aa17.25■□□□□ 0.35
CDK5RAP3-231ENST00000584063 PDS5BQ9NTI5 1447 aa17.25■□□□□ 0.35
CDK5RAP3-231ENST00000584063 URB2Q14146 1524 aaKnown RBP17.23■□□□□ 0.35
CDK5RAP3-231ENST00000584063 KCNA4P22459 653 aa17.22■□□□□ 0.35
CDK5RAP3-231ENST00000584063 TOPBP1Q92547 1522 aa17.22■□□□□ 0.35
CDK5RAP3-231ENST00000584063 HOMEZQ8IX15 550 aa17.2■□□□□ 0.34
CDK5RAP3-231ENST00000584063 TDRD9Q8NDG6 1382 aaKnown RBP17.17■□□□□ 0.34
CDK5RAP3-231ENST00000584063 POLA1P09884 1462 aaPredicted RBP17.17■□□□□ 0.34
CDK5RAP3-231ENST00000584063 KIF21BO75037 1637 aa17.16■□□□□ 0.34
CDK5RAP3-231ENST00000584063 DNMBPQ6XZF7 1577 aa17.16■□□□□ 0.34
CDK5RAP3-231ENST00000584063 IGF1RP08069 1367 aa17.16■□□□□ 0.34
CDK5RAP3-231ENST00000584063 ERCC6Q03468 1493 aa17.15■□□□□ 0.34
CDK5RAP3-231ENST00000584063 CENPBP07199 599 aaPredicted RBP17.13■□□□□ 0.33
CDK5RAP3-231ENST00000584063 P3H3Q8IVL6 736 aa17.13■□□□□ 0.33
CDK5RAP3-231ENST00000584063 CARMIL1Q5VZK9 1371 aa17.12■□□□□ 0.33
CDK5RAP3-231ENST00000584063 VPS8Q8N3P4 1428 aa17.11■□□□□ 0.33
CDK5RAP3-231ENST00000584063 PRXQ9BXM0 1461 aa17.11■□□□□ 0.33
CDK5RAP3-231ENST00000584063 ZNF316A6NFI3 1004 aaPredicted RBP17.09■□□□□ 0.33
CDK5RAP3-231ENST00000584063 ATP1B4Q9UN42 357 aaPredicted RBP17.08■□□□□ 0.33
CDK5RAP3-231ENST00000584063 TAOK2Q9UL54 1235 aa17.08■□□□□ 0.32
CDK5RAP3-231ENST00000584063 MIER1Q8N108 512 aa17.06■□□□□ 0.32
CDK5RAP3-231ENST00000584063 KANK4Q5T7N3 995 aaPredicted RBP17.05■□□□□ 0.32
CDK5RAP3-231ENST00000584063 UBE2Q2Q8WVN8 375 aa17.05■□□□□ 0.32
CDK5RAP3-231ENST00000584063 MRC2Q9UBG0 1479 aa17.03■□□□□ 0.32
CDK5RAP3-231ENST00000584063 AQRO60306 1485 aaKnown RBP eCLIP16.99■□□□□ 0.311e-7■■■■□ 24.7
CDK5RAP3-231ENST00000584063 ARAP1Q96P48 1450 aa16.99■□□□□ 0.31
CDK5RAP3-231ENST00000584063 ABCA10Q8WWZ4 1543 aa16.98■□□□□ 0.31
CDK5RAP3-231ENST00000584063 PDIA4P13667 645 aaKnown RBP16.97■□□□□ 0.31
CDK5RAP3-231ENST00000584063 ERICH3Q5RHP9 1530 aa16.96■□□□□ 0.31
CDK5RAP3-231ENST00000584063 FBLN2P98095 1184 aa16.94■□□□□ 0.3
CDK5RAP3-231ENST00000584063 ZNF608Q9ULD9 1512 aaPredicted RBP16.94■□□□□ 0.3
CDK5RAP3-231ENST00000584063 GAPVD1Q14C86 1478 aa16.93■□□□□ 0.3
CDK5RAP3-231ENST00000584063 ITGAEP38570 1179 aa16.93■□□□□ 0.3
CDK5RAP3-231ENST00000584063 TARBP1Q13395 1621 aaKnown RBP16.9■□□□□ 0.3
CDK5RAP3-231ENST00000584063 TPRNQ4KMQ1 711 aa16.89■□□□□ 0.3
CDK5RAP3-231ENST00000584063 NPM2Q86SE8 214 aaKnown RBP16.88■□□□□ 0.29
CDK5RAP3-231ENST00000584063 WDR97A6NE52 1622 aa16.88■□□□□ 0.29
CDK5RAP3-231ENST00000584063 WDR62O43379 1518 aa16.87■□□□□ 0.29
CDK5RAP3-231ENST00000584063 THOC2Q8NI27 1593 aaKnown RBP16.86■□□□□ 0.29
CDK5RAP3-231ENST00000584063 ARHGAP35Q9NRY4 1499 aa16.85■□□□□ 0.29
CDK5RAP3-231ENST00000584063 PKNOX2Q96KN3 472 aa16.83■□□□□ 0.28
CDK5RAP3-231ENST00000584063 ABCA5Q8WWZ7 1642 aa16.83■□□□□ 0.28
CDK5RAP3-231ENST00000584063 ANO8Q9HCE9 1232 aaPredicted RBP16.83■□□□□ 0.28
CDK5RAP3-231ENST00000584063 ARID3CA6NKF2 412 aa16.81■□□□□ 0.28
CDK5RAP3-231ENST00000584063 FHOD3Q2V2M9 1422 aa16.79■□□□□ 0.28
CDK5RAP3-231ENST00000584063 C14orf37Q86TY3 774 aa16.79■□□□□ 0.28
CDK5RAP3-231ENST00000584063 IFT140Q96RY7 1462 aa16.79■□□□□ 0.28
CDK5RAP3-231ENST00000584063 PDE4CQ08493 712 aa16.78■□□□□ 0.28
CDK5RAP3-231ENST00000584063 CHMP7Q8WUX9 453 aaPredicted RBP16.78■□□□□ 0.28
CDK5RAP3-231ENST00000584063 DHX57Q6P158 1386 aaKnown RBP16.78■□□□□ 0.28
CDK5RAP3-231ENST00000584063 PBRM1Q86U86 1689 aa16.75■□□□□ 0.27
CDK5RAP3-231ENST00000584063 EIF4G3O43432 1585 aaKnown RBP16.73■□□□□ 0.27
CDK5RAP3-231ENST00000584063 SNAPC4Q5SXM2 1469 aa16.72■□□□□ 0.27
CDK5RAP3-231ENST00000584063 CUL7Q14999 1698 aa16.72■□□□□ 0.27
CDK5RAP3-231ENST00000584063 GRIN2BQ13224 1484 aa16.72■□□□□ 0.27
CDK5RAP3-231ENST00000584063 HAP1P54257 671 aaPredicted RBP16.69■□□□□ 0.26
CDK5RAP3-231ENST00000584063 FHAD1B1AJZ9 1412 aa16.69■□□□□ 0.26
CDK5RAP3-231ENST00000584063 CCNB3Q8WWL7 1395 aa16.68■□□□□ 0.26
CDK5RAP3-231ENST00000584063 RRBP1Q9P2E9 1410 aaKnown RBP16.67■□□□□ 0.26
CDK5RAP3-231ENST00000584063 ADAMTS12P58397 1594 aa16.64■□□□□ 0.26
CDK5RAP3-231ENST00000584063 FAM50AQ14320 339 aaKnown RBP16.64■□□□□ 0.25
CDK5RAP3-231ENST00000584063 KCNH8Q96L42 1107 aa16.63■□□□□ 0.25
CDK5RAP3-231ENST00000584063 PHLDB1Q86UU1 1377 aa16.62■□□□□ 0.25
CDK5RAP3-231ENST00000584063 DHX37Q8IY37 1157 aaKnown RBP16.62■□□□□ 0.25
CDK5RAP3-231ENST00000584063 CHMP4AQ9BY43 222 aa16.61■□□□□ 0.25
CDK5RAP3-231ENST00000584063 CTTNBP2Q8WZ74 1663 aa16.61■□□□□ 0.25
CDK5RAP3-231ENST00000584063 RAB3GAP2Q9H2M9 1393 aa16.59■□□□□ 0.25
CDK5RAP3-231ENST00000584063 TIAM1Q13009 1591 aa16.57■□□□□ 0.24
CDK5RAP3-231ENST00000584063 HIRIP3Q9BW71 556 aaPredicted RBP16.56■□□□□ 0.24
CDK5RAP3-231ENST00000584063 NEFLP07196 543 aa16.55■□□□□ 0.24
CDK5RAP3-231ENST00000584063 SIN3AQ96ST3 1273 aa16.55■□□□□ 0.24
CDK5RAP3-231ENST00000584063 FMN1Q68DA7 1419 aa16.55■□□□□ 0.24
CDK5RAP3-231ENST00000584063 GRIN2AQ12879 1464 aa16.55■□□□□ 0.24
CDK5RAP3-231ENST00000584063 LRRC9Q6ZRR7 1453 aa16.54■□□□□ 0.24
CDK5RAP3-231ENST00000584063 BCL11BQ9C0K0 894 aaPredicted RBP16.54■□□□□ 0.24
CDK5RAP3-231ENST00000584063 PCF11O94913 1555 aaKnown RBP16.54■□□□□ 0.24
CDK5RAP3-231ENST00000584063 MTUS2Q5JR59 1369 aa16.54■□□□□ 0.24
CDK5RAP3-231ENST00000584063 BCANQ96GW7 911 aa16.54■□□□□ 0.24
CDK5RAP3-231ENST00000584063 JPH4Q96JJ6 628 aa16.52■□□□□ 0.23
CDK5RAP3-231ENST00000584063 EFCAB5A4FU69 1503 aa16.51■□□□□ 0.23
CDK5RAP3-231ENST00000584063 SYNJ2O15056 1496 aa16.51■□□□□ 0.23
CDK5RAP3-231ENST00000584063 SUPT16HQ9Y5B9 1047 aaKnown RBP16.5■□□□□ 0.23
CDK5RAP3-231ENST00000584063 MAGI1Q96QZ7 1491 aaPredicted RBP16.5■□□□□ 0.23
CDK5RAP3-231ENST00000584063 CASKIN1Q8WXD9 1431 aa16.5■□□□□ 0.23
CDK5RAP3-231ENST00000584063 IQGAP2Q13576 1575 aa16.49■□□□□ 0.23
CDK5RAP3-231ENST00000584063 MAPKBP1O60336 1514 aa16.49■□□□□ 0.23
CDK5RAP3-231ENST00000584063 CLSPNQ9HAW4 1339 aa16.49■□□□□ 0.23
CDK5RAP3-231ENST00000584063 CEP170Q5SW79 1584 aa16.48■□□□□ 0.23
CDK5RAP3-231ENST00000584063 FYCO1Q9BQS8 1478 aa16.45■□□□□ 0.22
CDK5RAP3-231ENST00000584063 KIAA0586Q9BVV6 1533 aa16.45■□□□□ 0.22
CDK5RAP3-231ENST00000584063 SETD5Q9C0A6 1442 aa16.44■□□□□ 0.22
CDK5RAP3-231ENST00000584063 DDX10Q13206 875 aaKnown RBP16.43■□□□□ 0.22
CDK5RAP3-231ENST00000584063 ANP32EQ9BTT0 268 aa16.43■□□□□ 0.22
CDK5RAP3-231ENST00000584063 SAMD1Q6SPF0 538 aaPredicted RBP16.42■□□□□ 0.22
CDK5RAP3-231ENST00000584063 SAMD9Q5K651 1589 aa16.42■□□□□ 0.22
CDK5RAP3-231ENST00000584063 CHD1O14646 1710 aa16.4■□□□□ 0.22
CDK5RAP3-231ENST00000584063 DISP1Q96F81 1524 aa16.38■□□□□ 0.21
CDK5RAP3-231ENST00000584063 CHIC2Q9UKJ5 165 aa16.38■□□□□ 0.21
CDK5RAP3-231ENST00000584063 MAP3K1Q13233 1512 aa16.37■□□□□ 0.21
CDK5RAP3-231ENST00000584063 CFAP43Q8NDM7 1665 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms