RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 CTTNBP2Q8WZ74 1663 aa24.4■■□□□ 1.5
SS18-215ENST00000580642 FBLN2P98095 1184 aa24.39■■□□□ 1.49
SS18-215ENST00000580642 CLIP1P30622 1438 aa24.38■■□□□ 1.49
SS18-215ENST00000580642 IQGAP2Q13576 1575 aa24.33■■□□□ 1.48
SS18-215ENST00000580642 CEP170Q5SW79 1584 aa24.32■■□□□ 1.48
SS18-215ENST00000580642 EFCAB5A4FU69 1503 aa24.31■■□□□ 1.48
SS18-215ENST00000580642 CHD1O14646 1710 aa24.29■■□□□ 1.48
SS18-215ENST00000580642 UGGT2Q9NYU1 1516 aa24.27■■□□□ 1.48
SS18-215ENST00000580642 ARHGAP35Q9NRY4 1499 aa24.24■■□□□ 1.47
SS18-215ENST00000580642 SAMD9Q5K651 1589 aa24.2■■□□□ 1.46
SS18-215ENST00000580642 JPH4Q96JJ6 628 aa24.19■■□□□ 1.46
SS18-215ENST00000580642 CLASP1Q7Z460 1538 aa24.15■■□□□ 1.46
SS18-215ENST00000580642 OSCARQ8IYS5 282 aa24.15■■□□□ 1.46
SS18-215ENST00000580642 VPS8Q8N3P4 1428 aa24.15■■□□□ 1.46
SS18-215ENST00000580642 ARAP1Q96P48 1450 aa24.14■■□□□ 1.46
SS18-215ENST00000580642 RANGAP1P46060 587 aaPredicted RBP24.14■■□□□ 1.45
SS18-215ENST00000580642 CARMIL2Q6F5E8 1435 aa24.14■■□□□ 1.45
SS18-215ENST00000580642 DISP1Q96F81 1524 aa24.1■■□□□ 1.45
SS18-215ENST00000580642 SHROOM2Q13796 1616 aa24.1■■□□□ 1.45
SS18-215ENST00000580642 FMN1Q68DA7 1419 aa24.1■■□□□ 1.45
SS18-215ENST00000580642 KIAA0556O60303 1618 aa24.06■■□□□ 1.44
SS18-215ENST00000580642 FHOD3Q2V2M9 1422 aa24.04■■□□□ 1.44
SS18-215ENST00000580642 PRG4Q92954 1404 aaPredicted RBP24.03■■□□□ 1.44
SS18-215ENST00000580642 P3H3Q8IVL6 736 aa24■■□□□ 1.43
SS18-215ENST00000580642 CASKIN1Q8WXD9 1431 aa23.96■■□□□ 1.43
SS18-215ENST00000580642 FYCO1Q9BQS8 1478 aa23.94■■□□□ 1.42
SS18-215ENST00000580642 MAP3K1Q13233 1512 aa23.91■■□□□ 1.42
SS18-215ENST00000580642 APLP2Q06481 763 aa23.91■■□□□ 1.42
SS18-215ENST00000580642 PTPRGP23470 1445 aa23.89■■□□□ 1.41
SS18-215ENST00000580642 PCF11O94913 1555 aaKnown RBP23.84■■□□□ 1.41
SS18-215ENST00000580642 CCDC18Q5T9S5 1454 aa23.81■■□□□ 1.4
SS18-215ENST00000580642 HECW1Q76N89 1606 aa23.81■■□□□ 1.4
SS18-215ENST00000580642 ERCC6L2Q5T890 1561 aa23.78■■□□□ 1.4
SS18-215ENST00000580642 ABCA8O94911 1581 aa23.78■■□□□ 1.4
SS18-215ENST00000580642 RAPGEF6Q8TEU7 1601 aa23.77■■□□□ 1.4
SS18-215ENST00000580642 UACAQ9BZF9 1416 aa23.76■■□□□ 1.39
SS18-215ENST00000580642 PLB1Q6P1J6 1458 aa23.74■■□□□ 1.39
SS18-215ENST00000580642 TIAM1Q13009 1591 aa23.74■■□□□ 1.39
SS18-215ENST00000580642 UHRF1BP1LA0JNW5 1464 aa23.73■■□□□ 1.39
SS18-215ENST00000580642 NUP153P49790 1475 aaKnown RBP23.72■■□□□ 1.39
SS18-215ENST00000580642 EPRSP07814 1512 aaKnown RBP23.72■■□□□ 1.39
SS18-215ENST00000580642 ATP1B4Q9UN42 357 aaPredicted RBP23.71■■□□□ 1.39
SS18-215ENST00000580642 CFAP43Q8NDM7 1665 aa23.69■■□□□ 1.38
SS18-215ENST00000580642 ARHGEF11O15085 1522 aa23.68■■□□□ 1.38
SS18-215ENST00000580642 ABCC2Q92887 1545 aa23.68■■□□□ 1.38
SS18-215ENST00000580642 TTBK1Q5TCY1 1321 aaPredicted RBP23.67■■□□□ 1.38
SS18-215ENST00000580642 CDK11AQ9UQ88 783 aaPredicted RBP23.67■■□□□ 1.38
SS18-215ENST00000580642 LRRC9Q6ZRR7 1453 aa23.66■■□□□ 1.38
SS18-215ENST00000580642 KANK4Q5T7N3 995 aaPredicted RBP23.6■■□□□ 1.37
SS18-215ENST00000580642 ATP10BO94823 1461 aa23.6■■□□□ 1.37
SS18-215ENST00000580642 MTUS2Q5JR59 1369 aa23.59■■□□□ 1.37
SS18-215ENST00000580642 LRRIQ1Q96JM4 1722 aa23.58■■□□□ 1.37
SS18-215ENST00000580642 EHBP1L1Q8N3D4 1523 aa23.58■■□□□ 1.36
SS18-215ENST00000580642 KDM5BQ9UGL1 1544 aa23.58■■□□□ 1.36
SS18-215ENST00000580642 CDK13Q14004 1512 aaKnown RBP23.56■■□□□ 1.36
SS18-215ENST00000580642 RIMBP3CA6NJZ7 1639 aa23.54■■□□□ 1.36
SS18-215ENST00000580642 RIMBP3BA6NNM3 1639 aa23.54■■□□□ 1.36
SS18-215ENST00000580642 RIMBP3Q9UFD9 1639 aa23.54■■□□□ 1.36
SS18-215ENST00000580642 PLEKHD1A6NEE1 506 aa23.53■■□□□ 1.36
SS18-215ENST00000580642 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.52■■□□□ 1.36
SS18-215ENST00000580642 HNRNPUL2Q1KMD3 747 aaKnown RBP23.52■■□□□ 1.36
SS18-215ENST00000580642 TROQ12816 1431 aaPredicted RBP23.51■■□□□ 1.35
SS18-215ENST00000580642 TRIM26Q12899 539 aaPredicted RBP23.5■■□□□ 1.35
SS18-215ENST00000580642 ADCY10Q96PN6 1610 aa23.49■■□□□ 1.35
SS18-215ENST00000580642 PPARGC1BQ86YN6 1023 aaKnown RBP23.49■■□□□ 1.35
SS18-215ENST00000580642 NPM1P06748 294 aaKnown RBP eCLIP23.46■■□□□ 1.35
SS18-215ENST00000580642 MAGI3Q5TCQ9 1506 aa23.46■■□□□ 1.35
SS18-215ENST00000580642 ARID3CA6NKF2 412 aa23.45■■□□□ 1.34
SS18-215ENST00000580642 SUPT6HQ7KZ85 1726 aaKnown RBP23.45■■□□□ 1.34
SS18-215ENST00000580642 ZCCHC11Q5TAX3 1644 aaKnown RBP23.43■■□□□ 1.34
SS18-215ENST00000580642 NCOA2Q15596 1464 aa23.42■■□□□ 1.34
SS18-215ENST00000580642 CYB5RLQ6IPT4 315 aa23.41■■□□□ 1.34
SS18-215ENST00000580642 RRBP1Q9P2E9 1410 aaKnown RBP23.38■■□□□ 1.33
SS18-215ENST00000580642 PHLDB1Q86UU1 1377 aa23.36■■□□□ 1.33
SS18-215ENST00000580642 KIF14Q15058 1648 aa23.35■■□□□ 1.33
SS18-215ENST00000580642 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.35■■□□□ 1.33
SS18-215ENST00000580642 MYOM3Q5VTT5 1437 aa23.34■■□□□ 1.33
SS18-215ENST00000580642 WDR7Q9Y4E6 1490 aa23.34■■□□□ 1.33
SS18-215ENST00000580642 MIA2Q96PC5 1412 aa23.33■■□□□ 1.33
SS18-215ENST00000580642 CCNB3Q8WWL7 1395 aa23.3■■□□□ 1.32
SS18-215ENST00000580642 MAPKBP1O60336 1514 aa23.3■■□□□ 1.32
SS18-215ENST00000580642 DNAJC5Q9H3Z4 198 aa23.3■■□□□ 1.32
SS18-215ENST00000580642 ASXL2Q76L83 1435 aa23.3■■□□□ 1.32
SS18-215ENST00000580642 ABCC10Q5T3U5 1492 aa23.3■■□□□ 1.32
SS18-215ENST00000580642 FGD6Q6ZV73 1430 aa23.28■■□□□ 1.32
SS18-215ENST00000580642 GPATCH8Q9UKJ3 1502 aaKnown RBP23.24■■□□□ 1.31
SS18-215ENST00000580642 ITSN2Q9NZM3 1697 aa23.22■■□□□ 1.31
SS18-215ENST00000580642 PCGF6Q9BYE7 350 aa23.21■■□□□ 1.31
SS18-215ENST00000580642 TCOF1Q13428 1488 aaKnown RBP23.21■■□□□ 1.31
SS18-215ENST00000580642 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.21■■□□□ 1.31
SS18-215ENST00000580642 ARAP3Q8WWN8 1544 aa23.19■■□□□ 1.3
SS18-215ENST00000580642 KCNH8Q96L42 1107 aa23.19■■□□□ 1.3
SS18-215ENST00000580642 CFDP1Q9UEE9 299 aaPredicted RBP23.19■■□□□ 1.3
SS18-215ENST00000580642 ABCA9Q8IUA7 1624 aa23.16■■□□□ 1.3
SS18-215ENST00000580642 PLCH2O75038 1416 aa23.16■■□□□ 1.3
SS18-215ENST00000580642 PTPN23Q9H3S7 1636 aa23.14■■□□□ 1.29
SS18-215ENST00000580642 TTC37Q6PGP7 1564 aa23.13■■□□□ 1.29
SS18-215ENST00000580642 PREX2Q70Z35 1606 aa23.12■■□□□ 1.29
SS18-215ENST00000580642 GLI2P10070 1586 aa23.12■■□□□ 1.29
SS18-215ENST00000580642 CDC42BPAQ5VT25 1732 aa23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms