RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 NUP160Q12769 1436 aa17.34■□□□□ 0.37
SS18-213ENST00000579640 CEP170Q5SW79 1584 aa17.31■□□□□ 0.36
SS18-213ENST00000579640 KIAA0586Q9BVV6 1533 aa17.3■□□□□ 0.36
SS18-213ENST00000579640 IQGAP2Q13576 1575 aa17.27■□□□□ 0.36
SS18-213ENST00000579640 CEP162Q5TB80 1403 aa17.24■□□□□ 0.35
SS18-213ENST00000579640 CLIP1P30622 1438 aa17.21■□□□□ 0.35
SS18-213ENST00000579640 CLASP1Q7Z460 1538 aa17.21■□□□□ 0.35
SS18-213ENST00000579640 OSCARQ8IYS5 282 aa17.2■□□□□ 0.34
SS18-213ENST00000579640 UGGT2Q9NYU1 1516 aa17.2■□□□□ 0.34
SS18-213ENST00000579640 EFCAB5A4FU69 1503 aa17.18■□□□□ 0.34
SS18-213ENST00000579640 SAMD9Q5K651 1589 aa17.15■□□□□ 0.34
SS18-213ENST00000579640 SHROOM2Q13796 1616 aa17.15■□□□□ 0.34
SS18-213ENST00000579640 RANGAP1P46060 587 aaPredicted RBP17.15■□□□□ 0.34
SS18-213ENST00000579640 JPH4Q96JJ6 628 aa17.15■□□□□ 0.34
SS18-213ENST00000579640 ARHGAP35Q9NRY4 1499 aa17.14■□□□□ 0.33
SS18-213ENST00000579640 CARMIL2Q6F5E8 1435 aa17.11■□□□□ 0.33
SS18-213ENST00000579640 KIAA0556O60303 1618 aa17.1■□□□□ 0.33
SS18-213ENST00000579640 DISP1Q96F81 1524 aa17.1■□□□□ 0.33
SS18-213ENST00000579640 PRG4Q92954 1404 aaPredicted RBP17.08■□□□□ 0.32
SS18-213ENST00000579640 ARAP1Q96P48 1450 aa17.07■□□□□ 0.32
SS18-213ENST00000579640 DNAJC5Q9H3Z4 198 aa17.07■□□□□ 0.32
SS18-213ENST00000579640 FHOD3Q2V2M9 1422 aa17.05■□□□□ 0.32
SS18-213ENST00000579640 P3H3Q8IVL6 736 aa17.03■□□□□ 0.32
SS18-213ENST00000579640 FMN1Q68DA7 1419 aa17.02■□□□□ 0.31
SS18-213ENST00000579640 VPS8Q8N3P4 1428 aa17.02■□□□□ 0.31
SS18-213ENST00000579640 ERCC6L2Q5T890 1561 aa16.98■□□□□ 0.31
SS18-213ENST00000579640 PTPRGP23470 1445 aa16.95■□□□□ 0.3
SS18-213ENST00000579640 CASKIN1Q8WXD9 1431 aa16.93■□□□□ 0.3
SS18-213ENST00000579640 FYCO1Q9BQS8 1478 aa16.92■□□□□ 0.3
SS18-213ENST00000579640 ARHGEF11O15085 1522 aa16.91■□□□□ 0.3
SS18-213ENST00000579640 PCF11O94913 1555 aaKnown RBP16.9■□□□□ 0.3
SS18-213ENST00000579640 RAPGEF6Q8TEU7 1601 aa16.88■□□□□ 0.29
SS18-213ENST00000579640 TTBK1Q5TCY1 1321 aaPredicted RBP16.88■□□□□ 0.29
SS18-213ENST00000579640 HECW1Q76N89 1606 aa16.88■□□□□ 0.29
SS18-213ENST00000579640 ABCA8O94911 1581 aa16.88■□□□□ 0.29
SS18-213ENST00000579640 RIMBP3CA6NJZ7 1639 aa16.86■□□□□ 0.29
SS18-213ENST00000579640 RIMBP3BA6NNM3 1639 aa16.86■□□□□ 0.29
SS18-213ENST00000579640 RIMBP3Q9UFD9 1639 aa16.86■□□□□ 0.29
SS18-213ENST00000579640 PLB1Q6P1J6 1458 aa16.85■□□□□ 0.29
SS18-213ENST00000579640 UACAQ9BZF9 1416 aa16.85■□□□□ 0.29
SS18-213ENST00000579640 APLP2Q06481 763 aa16.84■□□□□ 0.29
SS18-213ENST00000579640 MAP3K1Q13233 1512 aa16.83■□□□□ 0.28
SS18-213ENST00000579640 UHRF1BP1LA0JNW5 1464 aa16.82■□□□□ 0.28
SS18-213ENST00000579640 ABCC2Q92887 1545 aa16.82■□□□□ 0.28
SS18-213ENST00000579640 CCDC18Q5T9S5 1454 aa16.82■□□□□ 0.28
SS18-213ENST00000579640 ATP1B4Q9UN42 357 aaPredicted RBP16.82■□□□□ 0.28
SS18-213ENST00000579640 NUP153P49790 1475 aaKnown RBP16.81■□□□□ 0.28
SS18-213ENST00000579640 EPRSP07814 1512 aaKnown RBP16.79■□□□□ 0.28
SS18-213ENST00000579640 CFAP43Q8NDM7 1665 aa16.78■□□□□ 0.28
SS18-213ENST00000579640 TIAM1Q13009 1591 aa16.78■□□□□ 0.28
SS18-213ENST00000579640 LRRIQ1Q96JM4 1722 aa16.78■□□□□ 0.28
SS18-213ENST00000579640 ADCY10Q96PN6 1610 aa16.75■□□□□ 0.27
SS18-213ENST00000579640 CDK13Q14004 1512 aaKnown RBP16.73■□□□□ 0.27
SS18-213ENST00000579640 KDM5BQ9UGL1 1544 aa16.73■□□□□ 0.27
SS18-213ENST00000579640 ATP10BO94823 1461 aa16.73■□□□□ 0.27
SS18-213ENST00000579640 CYB5RLQ6IPT4 315 aa16.71■□□□□ 0.27
SS18-213ENST00000579640 CDK11AQ9UQ88 783 aaPredicted RBP16.71■□□□□ 0.27
SS18-213ENST00000579640 LRRC9Q6ZRR7 1453 aa16.7■□□□□ 0.26
SS18-213ENST00000579640 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.7■□□□□ 0.26
SS18-213ENST00000579640 HNRNPUL2Q1KMD3 747 aaKnown RBP16.7■□□□□ 0.26
SS18-213ENST00000579640 ZCCHC11Q5TAX3 1644 aaKnown RBP16.69■□□□□ 0.26
SS18-213ENST00000579640 ARID3CA6NKF2 412 aa16.69■□□□□ 0.26
SS18-213ENST00000579640 EHBP1L1Q8N3D4 1523 aa16.68■□□□□ 0.26
SS18-213ENST00000579640 MTUS2Q5JR59 1369 aa16.67■□□□□ 0.26
SS18-213ENST00000579640 NPM1P06748 294 aaKnown RBP eCLIP16.66■□□□□ 0.26
SS18-213ENST00000579640 KANK4Q5T7N3 995 aaPredicted RBP16.66■□□□□ 0.26
SS18-213ENST00000579640 PLEKHD1A6NEE1 506 aa16.65■□□□□ 0.26
SS18-213ENST00000579640 MAGI3Q5TCQ9 1506 aa16.64■□□□□ 0.25
SS18-213ENST00000579640 TROQ12816 1431 aaPredicted RBP16.64■□□□□ 0.25
SS18-213ENST00000579640 SUPT6HQ7KZ85 1726 aaKnown RBP16.61■□□□□ 0.25
SS18-213ENST00000579640 PPARGC1BQ86YN6 1023 aaKnown RBP16.61■□□□□ 0.25
SS18-213ENST00000579640 WDR7Q9Y4E6 1490 aa16.58■□□□□ 0.24
SS18-213ENST00000579640 MAPKBP1O60336 1514 aa16.58■□□□□ 0.24
SS18-213ENST00000579640 ASXL2Q76L83 1435 aa16.57■□□□□ 0.24
SS18-213ENST00000579640 KIF14Q15058 1648 aa16.57■□□□□ 0.24
SS18-213ENST00000579640 NCOA2Q15596 1464 aa16.56■□□□□ 0.24
SS18-213ENST00000579640 ABCC10Q5T3U5 1492 aa16.5■□□□□ 0.23
SS18-213ENST00000579640 PHLDB1Q86UU1 1377 aa16.5■□□□□ 0.23
SS18-213ENST00000579640 KCNH8Q96L42 1107 aa16.49■□□□□ 0.23
SS18-213ENST00000579640 CCNB3Q8WWL7 1395 aa16.49■□□□□ 0.23
SS18-213ENST00000579640 MYOM3Q5VTT5 1437 aa16.48■□□□□ 0.23
SS18-213ENST00000579640 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.48■□□□□ 0.23
SS18-213ENST00000579640 ITSN2Q9NZM3 1697 aa16.48■□□□□ 0.23
SS18-213ENST00000579640 ABCA9Q8IUA7 1624 aa16.46■□□□□ 0.23
SS18-213ENST00000579640 MIA2Q96PC5 1412 aa16.45■□□□□ 0.22
SS18-213ENST00000579640 TTC37Q6PGP7 1564 aa16.45■□□□□ 0.22
SS18-213ENST00000579640 GPATCH8Q9UKJ3 1502 aaKnown RBP16.45■□□□□ 0.22
SS18-213ENST00000579640 RRBP1Q9P2E9 1410 aaKnown RBP16.45■□□□□ 0.22
SS18-213ENST00000579640 CDC42BPAQ5VT25 1732 aa16.44■□□□□ 0.22
SS18-213ENST00000579640 GLI2P10070 1586 aa16.44■□□□□ 0.22
SS18-213ENST00000579640 FGD6Q6ZV73 1430 aa16.43■□□□□ 0.22
SS18-213ENST00000579640 TRIM26Q12899 539 aaPredicted RBP16.43■□□□□ 0.22
SS18-213ENST00000579640 MYO5CQ9NQX4 1742 aa16.43■□□□□ 0.22
SS18-213ENST00000579640 PREX2Q70Z35 1606 aa16.42■□□□□ 0.22
SS18-213ENST00000579640 ARAP3Q8WWN8 1544 aa16.41■□□□□ 0.22
SS18-213ENST00000579640 DIP2BQ9P265 1576 aa16.41■□□□□ 0.22
SS18-213ENST00000579640 PLCH2O75038 1416 aa16.4■□□□□ 0.22
SS18-213ENST00000579640 CFDP1Q9UEE9 299 aaPredicted RBP16.4■□□□□ 0.22
SS18-213ENST00000579640 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.4■□□□□ 0.22
SS18-213ENST00000579640 CDC42BPBQ9Y5S2 1711 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms