RNA–Protein interactions for RNA: ENST00000578917.1

TRAF4-213, Transcript of TNF receptor associated factor 4, humanhuman

TSL 4

Gene TRAF4, Length 484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-213ENST00000578917 RUSC2Q8N2Y8 1516 aa10.91□□□□□ -0.66
TRAF4-213ENST00000578917 CEP170Q5SW79 1584 aa10.9□□□□□ -0.66
TRAF4-213ENST00000578917 CSRNP3Q8WYN3 585 aa10.9□□□□□ -0.66
TRAF4-213ENST00000578917 NPM1P06748 294 aaKnown RBP eCLIP10.89□□□□□ -0.67
TRAF4-213ENST00000578917 CHIC1Q5VXU3 224 aa10.89□□□□□ -0.67
TRAF4-213ENST00000578917 KIAA0586Q9BVV6 1533 aa10.89□□□□□ -0.67
TRAF4-213ENST00000578917 RAPGEF2Q9Y4G8 1499 aa10.87□□□□□ -0.67
TRAF4-213ENST00000578917 CUL7Q14999 1698 aa10.87□□□□□ -0.67
TRAF4-213ENST00000578917 EHMT2Q96KQ7 1210 aa10.84□□□□□ -0.67
TRAF4-213ENST00000578917 CARMIL2Q6F5E8 1435 aa10.84□□□□□ -0.67
TRAF4-213ENST00000578917 ERCC6L2Q5T890 1561 aa10.82□□□□□ -0.68
TRAF4-213ENST00000578917 RANGAP1P46060 587 aaPredicted RBP10.82□□□□□ -0.68
TRAF4-213ENST00000578917 PTPRGP23470 1445 aa10.82□□□□□ -0.68
TRAF4-213ENST00000578917 EEA1Q15075 1411 aa10.8□□□□□ -0.68
TRAF4-213ENST00000578917 TNIKQ9UKE5 1360 aa10.78□□□□□ -0.68
TRAF4-213ENST00000578917 SHROOM2Q13796 1616 aa10.78□□□□□ -0.68
TRAF4-213ENST00000578917 UBTFP17480 764 aaKnown RBP10.78□□□□□ -0.68
TRAF4-213ENST00000578917 P3H3Q8IVL6 736 aa10.78□□□□□ -0.68
TRAF4-213ENST00000578917 PRXQ9BXM0 1461 aa10.77□□□□□ -0.69
TRAF4-213ENST00000578917 IQGAP2Q13576 1575 aa10.76□□□□□ -0.69
TRAF4-213ENST00000578917 FAM69CQ0P6D2 419 aa10.73□□□□□ -0.69
TRAF4-213ENST00000578917 GOLGA3Q08378 1498 aa10.72□□□□□ -0.69
TRAF4-213ENST00000578917 DISP1Q96F81 1524 aa10.69□□□□□ -0.7
TRAF4-213ENST00000578917 UGGT2Q9NYU1 1516 aa10.69□□□□□ -0.7
TRAF4-213ENST00000578917 UACAQ9BZF9 1416 aa10.69□□□□□ -0.7
TRAF4-213ENST00000578917 ARID3CA6NKF2 412 aa10.68□□□□□ -0.7
TRAF4-213ENST00000578917 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.68□□□□□ -0.7
TRAF4-213ENST00000578917 HNRNPUL2Q1KMD3 747 aaKnown RBP10.68□□□□□ -0.7
TRAF4-213ENST00000578917 KCNH8Q96L42 1107 aa10.65□□□□□ -0.7
TRAF4-213ENST00000578917 ATP1B4Q9UN42 357 aaPredicted RBP10.65□□□□□ -0.7
TRAF4-213ENST00000578917 ABCC2Q92887 1545 aa10.63□□□□□ -0.71
TRAF4-213ENST00000578917 KIAA0556O60303 1618 aa10.62□□□□□ -0.71
TRAF4-213ENST00000578917 ADCY10Q96PN6 1610 aa10.62□□□□□ -0.71
TRAF4-213ENST00000578917 UHRF1BP1LA0JNW5 1464 aa10.62□□□□□ -0.71
TRAF4-213ENST00000578917 PLB1Q6P1J6 1458 aa10.61□□□□□ -0.71
TRAF4-213ENST00000578917 ASXL2Q76L83 1435 aa10.61□□□□□ -0.71
TRAF4-213ENST00000578917 ABCC10Q5T3U5 1492 aa10.61□□□□□ -0.71
TRAF4-213ENST00000578917 CTTNBP2Q8WZ74 1663 aa10.6□□□□□ -0.71
TRAF4-213ENST00000578917 MAPKBP1O60336 1514 aa10.58□□□□□ -0.72
TRAF4-213ENST00000578917 KIF21BO75037 1637 aa10.58□□□□□ -0.72
TRAF4-213ENST00000578917 FHOD3Q2V2M9 1422 aa10.58□□□□□ -0.72
TRAF4-213ENST00000578917 KDM5BQ9UGL1 1544 aa10.57□□□□□ -0.72
TRAF4-213ENST00000578917 PLEKHD1A6NEE1 506 aa10.56□□□□□ -0.72
TRAF4-213ENST00000578917 CDK11AQ9UQ88 783 aaPredicted RBP10.52□□□□□ -0.73
TRAF4-213ENST00000578917 ATP10BO94823 1461 aa10.52□□□□□ -0.73
TRAF4-213ENST00000578917 WDR7Q9Y4E6 1490 aa10.52□□□□□ -0.73
TRAF4-213ENST00000578917 ABCA8O94911 1581 aa10.52□□□□□ -0.73
TRAF4-213ENST00000578917 LOC105371045A0A1W2PR82 267 aa10.51□□□□□ -0.73
TRAF4-213ENST00000578917 EFCAB5A4FU69 1503 aa10.51□□□□□ -0.73
TRAF4-213ENST00000578917 SAMD9Q5K651 1589 aa10.51□□□□□ -0.73
TRAF4-213ENST00000578917 FMN1Q68DA7 1419 aa10.5□□□□□ -0.73
TRAF4-213ENST00000578917 EPRSP07814 1512 aaKnown RBP10.5□□□□□ -0.73
TRAF4-213ENST00000578917 DIP2BQ9P265 1576 aa10.5□□□□□ -0.73
TRAF4-213ENST00000578917 CD109Q6YHK3 1445 aa10.5□□□□□ -0.73
TRAF4-213ENST00000578917 ZCCHC11Q5TAX3 1644 aaKnown RBP10.49□□□□□ -0.73
TRAF4-213ENST00000578917 AEBP2Q6ZN18 517 aaPredicted RBP10.48□□□□□ -0.73
TRAF4-213ENST00000578917 CLIP1P30622 1438 aa10.48□□□□□ -0.73
TRAF4-213ENST00000578917 ARHGAP35Q9NRY4 1499 aa10.48□□□□□ -0.73
TRAF4-213ENST00000578917 NUP153P49790 1475 aaKnown RBP10.47□□□□□ -0.73
TRAF4-213ENST00000578917 TEX14Q8IWB6 1497 aa10.46□□□□□ -0.74
TRAF4-213ENST00000578917 RAPGEF6Q8TEU7 1601 aa10.46□□□□□ -0.74
TRAF4-213ENST00000578917 KIF13AQ9H1H9 1805 aa10.46□□□□□ -0.74
TRAF4-213ENST00000578917 GLI2P10070 1586 aa10.45□□□□□ -0.74
TRAF4-213ENST00000578917 TSPOAP1O95153 1857 aa10.43□□□□□ -0.74
TRAF4-213ENST00000578917 KDM6BO15054 1643 aa10.4□□□□□ -0.74
TRAF4-213ENST00000578917 CDK13Q14004 1512 aaKnown RBP10.39□□□□□ -0.75
TRAF4-213ENST00000578917 RAPGEF3O95398 923 aa10.39□□□□□ -0.75
TRAF4-213ENST00000578917 CEP162Q5TB80 1403 aa10.39□□□□□ -0.75
TRAF4-213ENST00000578917 CASKIN1Q8WXD9 1431 aa10.39□□□□□ -0.75
TRAF4-213ENST00000578917 PHLDB1Q86UU1 1377 aa10.39□□□□□ -0.75
TRAF4-213ENST00000578917 MAGI3Q5TCQ9 1506 aa10.38□□□□□ -0.75
TRAF4-213ENST00000578917 EFCAB2Q5VUJ9 269 aa10.38□□□□□ -0.75
TRAF4-213ENST00000578917 MYT1LQ9UL68 1186 aa10.37□□□□□ -0.75
TRAF4-213ENST00000578917 HECW1Q76N89 1606 aa10.36□□□□□ -0.75
TRAF4-213ENST00000578917 MAP3K4Q9Y6R4 1608 aa10.36□□□□□ -0.75
TRAF4-213ENST00000578917 COL17A1Q9UMD9 1497 aaPredicted RBP10.36□□□□□ -0.75
TRAF4-213ENST00000578917 TROQ12816 1431 aaPredicted RBP10.34□□□□□ -0.75
TRAF4-213ENST00000578917 APLP2Q06481 763 aa10.34□□□□□ -0.75
TRAF4-213ENST00000578917 ZNF777Q9ULD5 760 aaPredicted RBP10.34□□□□□ -0.75
TRAF4-213ENST00000578917 CCDC18Q5T9S5 1454 aa10.34□□□□□ -0.75
TRAF4-213ENST00000578917 CFAP43Q8NDM7 1665 aa10.34□□□□□ -0.75
TRAF4-213ENST00000578917 ARID4BQ4LE39 1312 aaPredicted RBP10.33□□□□□ -0.76
TRAF4-213ENST00000578917 MTUS2Q5JR59 1369 aa10.33□□□□□ -0.76
TRAF4-213ENST00000578917 FYCO1Q9BQS8 1478 aa10.33□□□□□ -0.76
TRAF4-213ENST00000578917 AKNAQ7Z591 1439 aa10.33□□□□□ -0.76
TRAF4-213ENST00000578917 FANCAO15360 1455 aa10.32□□□□□ -0.76
TRAF4-213ENST00000578917 NEO1Q92859 1461 aa10.32□□□□□ -0.76
TRAF4-213ENST00000578917 ABCA9Q8IUA7 1624 aa10.32□□□□□ -0.76
TRAF4-213ENST00000578917 PLCH2O75038 1416 aa10.32□□□□□ -0.76
TRAF4-213ENST00000578917 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.31□□□□□ -0.76
TRAF4-213ENST00000578917 PPRC1Q5VV67 1664 aaKnown RBP10.31□□□□□ -0.76
TRAF4-213ENST00000578917 ARAP3Q8WWN8 1544 aa10.3□□□□□ -0.76
TRAF4-213ENST00000578917 CFDP1Q9UEE9 299 aaPredicted RBP10.3□□□□□ -0.76
TRAF4-213ENST00000578917 DENND4BO75064 1496 aaPredicted RBP10.3□□□□□ -0.76
TRAF4-213ENST00000578917 KDM4FA0A1W2PPD8 638 aa10.29□□□□□ -0.76
TRAF4-213ENST00000578917 SCAPERQ9BY12 1400 aa10.29□□□□□ -0.76
TRAF4-213ENST00000578917 PCF11O94913 1555 aaKnown RBP10.29□□□□□ -0.76
TRAF4-213ENST00000578917 AFAP1Q8N556 730 aa10.28□□□□□ -0.76
TRAF4-213ENST00000578917 CCNB3Q8WWL7 1395 aa10.27□□□□□ -0.76
TRAF4-213ENST00000578917 KIF14Q15058 1648 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms