RNA–Protein interactions for RNA: ENST00000578917.1

TRAF4-213, Transcript of TNF receptor associated factor 4, humanhuman

TSL 4

Gene TRAF4, Length 484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-213ENST00000578917 NISCHQ9Y2I1 1504 aa15.63■□□□□ 0.09
TRAF4-213ENST00000578917 CCDC180Q9P1Z9 1646 aa13.79□□□□□ -0.2
TRAF4-213ENST00000578917 ABCC9O60706 1549 aa13.75□□□□□ -0.21
TRAF4-213ENST00000578917 DCAF8L2P0C7V8 631 aa13.4□□□□□ -0.26
TRAF4-213ENST00000578917 RB1CC1Q8TDY2 1594 aa13.12□□□□□ -0.31
TRAF4-213ENST00000578917 NACADO15069 1562 aa13.08□□□□□ -0.32
TRAF4-213ENST00000578917 ZCCHC6Q5VYS8 1495 aaKnown RBP12.96□□□□□ -0.34
TRAF4-213ENST00000578917 PABPN1Q86U42 306 aaKnown RBP eCLIP12.95□□□□□ -0.34
TRAF4-213ENST00000578917 MYO15BQ96JP2 1530 aa12.94□□□□□ -0.34
TRAF4-213ENST00000578917 DCAF1Q9Y4B6 1507 aa12.87□□□□□ -0.35
TRAF4-213ENST00000578917 DNAJC5BQ9UF47 199 aa12.71□□□□□ -0.37
TRAF4-213ENST00000578917 SCRIBQ14160 1630 aa12.7□□□□□ -0.38
TRAF4-213ENST00000578917 BICRAQ9NZM4 1560 aa12.65□□□□□ -0.38
TRAF4-213ENST00000578917 UNC13AQ9UPW8 1703 aa12.64□□□□□ -0.39
TRAF4-213ENST00000578917 SHROOM4Q9ULL8 1493 aa12.54□□□□□ -0.4
TRAF4-213ENST00000578917 EIF4G1Q04637 1599 aaKnown RBP12.38□□□□□ -0.43
TRAF4-213ENST00000578917 CECR2Q9BXF3 1484 aa12.36□□□□□ -0.43
TRAF4-213ENST00000578917 CC2D2AQ9P2K1 1620 aa12.34□□□□□ -0.43
TRAF4-213ENST00000578917 BAZ1AQ9NRL2 1556 aaPredicted RBP12.12□□□□□ -0.47
TRAF4-213ENST00000578917 NCAPD3P42695 1498 aa12.11□□□□□ -0.47
TRAF4-213ENST00000578917 ATAD2BQ9ULI0 1458 aa12.11□□□□□ -0.47
TRAF4-213ENST00000578917 SMARCA4P51532 1647 aa12.09□□□□□ -0.47
TRAF4-213ENST00000578917 SMARCA2P51531 1590 aa12.08□□□□□ -0.48
TRAF4-213ENST00000578917 MROH2BQ7Z745 1585 aa12.05□□□□□ -0.48
TRAF4-213ENST00000578917 BAZ1BQ9UIG0 1483 aaKnown RBP12.03□□□□□ -0.48
TRAF4-213ENST00000578917 HMGXB3Q12766 1538 aa11.97□□□□□ -0.49
TRAF4-213ENST00000578917 RSF1Q96T23 1441 aaPredicted RBP11.94□□□□□ -0.5
TRAF4-213ENST00000578917 PEG3Q9GZU2 1588 aa11.93□□□□□ -0.5
TRAF4-213ENST00000578917 ERCC6Q03468 1493 aa11.9□□□□□ -0.5
TRAF4-213ENST00000578917 WIZO95785 1651 aa11.87□□□□□ -0.51
TRAF4-213ENST00000578917 NESP48681 1621 aa11.85□□□□□ -0.51
TRAF4-213ENST00000578917 CADPSQ9ULU8 1353 aa11.81□□□□□ -0.52
TRAF4-213ENST00000578917 SUPT5HO00267 1087 aaKnown RBP11.8□□□□□ -0.52
TRAF4-213ENST00000578917 PDS5BQ9NTI5 1447 aa11.79□□□□□ -0.52
TRAF4-213ENST00000578917 TOP2AP11388 1531 aaKnown RBP11.76□□□□□ -0.53
TRAF4-213ENST00000578917 LAMC3Q9Y6N6 1575 aa11.75□□□□□ -0.53
TRAF4-213ENST00000578917 CUX2O14529 1486 aa11.7□□□□□ -0.54
TRAF4-213ENST00000578917 CCDC88BA6NC98 1476 aa11.69□□□□□ -0.54
TRAF4-213ENST00000578917 CFTRP13569 1480 aa11.67□□□□□ -0.54
TRAF4-213ENST00000578917 FANCD2Q9BXW9 1451 aa11.65□□□□□ -0.54
TRAF4-213ENST00000578917 CEP164Q9UPV0 1460 aa11.63□□□□□ -0.55
TRAF4-213ENST00000578917 DNAJC5Q9H3Z4 198 aa11.63□□□□□ -0.55
TRAF4-213ENST00000578917 MRC2Q9UBG0 1479 aa11.61□□□□□ -0.55
TRAF4-213ENST00000578917 KIF21AQ7Z4S6 1674 aa11.58□□□□□ -0.56
TRAF4-213ENST00000578917 THOC2Q8NI27 1593 aaKnown RBP11.55□□□□□ -0.56
TRAF4-213ENST00000578917 WDR62O43379 1518 aa11.5□□□□□ -0.57
TRAF4-213ENST00000578917 URB2Q14146 1524 aaKnown RBP11.49□□□□□ -0.57
TRAF4-213ENST00000578917 ABCC8Q09428 1581 aa11.45□□□□□ -0.58
TRAF4-213ENST00000578917 TOPBP1Q92547 1522 aa11.42□□□□□ -0.58
TRAF4-213ENST00000578917 IFT140Q96RY7 1462 aa11.39□□□□□ -0.59
TRAF4-213ENST00000578917 DNMBPQ6XZF7 1577 aa11.37□□□□□ -0.59
TRAF4-213ENST00000578917 SOGA1O94964 1423 aa11.37□□□□□ -0.59
TRAF4-213ENST00000578917 OSCARQ8IYS5 282 aa11.37□□□□□ -0.59
TRAF4-213ENST00000578917 PRDM2Q13029 1718 aa11.37□□□□□ -0.59
TRAF4-213ENST00000578917 FBLN2P98095 1184 aa11.36□□□□□ -0.59
TRAF4-213ENST00000578917 ZNF608Q9ULD9 1512 aaPredicted RBP11.34□□□□□ -0.59
TRAF4-213ENST00000578917 TDRD9Q8NDG6 1382 aaKnown RBP11.33□□□□□ -0.6
TRAF4-213ENST00000578917 AQRO60306 1485 aaKnown RBP eCLIP11.32□□□□□ -0.63e-10■■■□□ 16.6
TRAF4-213ENST00000578917 POLA1P09884 1462 aaPredicted RBP11.32□□□□□ -0.6
TRAF4-213ENST00000578917 RAD54L2Q9Y4B4 1467 aa11.32□□□□□ -0.6
TRAF4-213ENST00000578917 FGD5Q6ZNL6 1462 aa11.3□□□□□ -0.6
TRAF4-213ENST00000578917 CUX1P39880 1505 aa11.3□□□□□ -0.6
TRAF4-213ENST00000578917 WRNQ14191 1432 aaPredicted RBP eCLIP11.28□□□□□ -0.6
TRAF4-213ENST00000578917 CHMP7Q8WUX9 453 aaPredicted RBP11.27□□□□□ -0.61
TRAF4-213ENST00000578917 TARBP1Q13395 1621 aaKnown RBP11.23□□□□□ -0.61
TRAF4-213ENST00000578917 TRIM41Q8WV44 630 aa11.22□□□□□ -0.61
TRAF4-213ENST00000578917 EIF4G3O43432 1585 aaKnown RBP11.2□□□□□ -0.62
TRAF4-213ENST00000578917 GRIN2BQ13224 1484 aa11.19□□□□□ -0.62
TRAF4-213ENST00000578917 GAPVD1Q14C86 1478 aa11.19□□□□□ -0.62
TRAF4-213ENST00000578917 ABCA10Q8WWZ4 1543 aa11.16□□□□□ -0.62
TRAF4-213ENST00000578917 SNAPC4Q5SXM2 1469 aa11.16□□□□□ -0.62
TRAF4-213ENST00000578917 TOP2BQ02880 1626 aa11.16□□□□□ -0.62
TRAF4-213ENST00000578917 SYNJ1O43426 1573 aa11.15□□□□□ -0.62
TRAF4-213ENST00000578917 MAGI1Q96QZ7 1491 aaPredicted RBP11.13□□□□□ -0.63
TRAF4-213ENST00000578917 WDR97A6NE52 1622 aa11.13□□□□□ -0.63
TRAF4-213ENST00000578917 CYB5RLQ6IPT4 315 aa11.11□□□□□ -0.63
TRAF4-213ENST00000578917 SYNJ2O15056 1496 aa11.11□□□□□ -0.63
TRAF4-213ENST00000578917 BIVM-ERCC5R4GMW8 1640 aa11.1□□□□□ -0.63
TRAF4-213ENST00000578917 KIF27Q86VH2 1401 aa11.08□□□□□ -0.64
TRAF4-213ENST00000578917 FHAD1B1AJZ9 1412 aa11.07□□□□□ -0.64
TRAF4-213ENST00000578917 ABCA5Q8WWZ7 1642 aa11.05□□□□□ -0.64
TRAF4-213ENST00000578917 IGF1RP08069 1367 aa11.04□□□□□ -0.64
TRAF4-213ENST00000578917 CHD1O14646 1710 aa11.04□□□□□ -0.64
TRAF4-213ENST00000578917 GRIN2AQ12879 1464 aa11.02□□□□□ -0.65
TRAF4-213ENST00000578917 ARHGEF11O15085 1522 aa11.02□□□□□ -0.65
TRAF4-213ENST00000578917 ERICH3Q5RHP9 1530 aa11.02□□□□□ -0.65
TRAF4-213ENST00000578917 PBRM1Q86U86 1689 aa11.01□□□□□ -0.65
TRAF4-213ENST00000578917 JPH4Q96JJ6 628 aa10.99□□□□□ -0.65
TRAF4-213ENST00000578917 CARMIL1Q5VZK9 1371 aa10.99□□□□□ -0.65
TRAF4-213ENST00000578917 RIMBP3CA6NJZ7 1639 aa10.98□□□□□ -0.65
TRAF4-213ENST00000578917 RIMBP3BA6NNM3 1639 aa10.98□□□□□ -0.65
TRAF4-213ENST00000578917 RIMBP3Q9UFD9 1639 aa10.98□□□□□ -0.65
TRAF4-213ENST00000578917 ADAMTS12P58397 1594 aa10.97□□□□□ -0.65
TRAF4-213ENST00000578917 TRHP20396 242 aaPredicted RBP10.96□□□□□ -0.65
TRAF4-213ENST00000578917 NUP160Q12769 1436 aa10.95□□□□□ -0.66
TRAF4-213ENST00000578917 CLASP1Q7Z460 1538 aa10.94□□□□□ -0.66
TRAF4-213ENST00000578917 TTBK1Q5TCY1 1321 aaPredicted RBP10.93□□□□□ -0.66
TRAF4-213ENST00000578917 FAM9AQ8IZU1 332 aaPredicted RBP10.93□□□□□ -0.66
TRAF4-213ENST00000578917 ARAP1Q96P48 1450 aa10.92□□□□□ -0.66
TRAF4-213ENST00000578917 PRG4Q92954 1404 aaPredicted RBP10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 157.5 ms