RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 CUL7Q14999 1698 aa14.1□□□□□ -0.15
CCDC40-212ENST00000574799 MIER1Q8N108 512 aa14.09□□□□□ -0.15
CCDC40-212ENST00000574799 LRRIQ1Q96JM4 1722 aa14.08□□□□□ -0.15
CCDC40-212ENST00000574799 PBRM1Q86U86 1689 aa14.06□□□□□ -0.16
CCDC40-212ENST00000574799 CARMIL1Q5VZK9 1371 aa14.06□□□□□ -0.16
CCDC40-212ENST00000574799 ANP32EQ9BTT0 268 aa14.04□□□□□ -0.16
CCDC40-212ENST00000574799 PDS5BQ9NTI5 1447 aa14.01□□□□□ -0.17
CCDC40-212ENST00000574799 CFAP43Q8NDM7 1665 aa14□□□□□ -0.17
CCDC40-212ENST00000574799 PCF11O94913 1555 aaKnown RBP13.99□□□□□ -0.17
CCDC40-212ENST00000574799 SAMD9Q5K651 1589 aa13.99□□□□□ -0.17
CCDC40-212ENST00000574799 KANK4Q5T7N3 995 aaPredicted RBP13.99□□□□□ -0.17
CCDC40-212ENST00000574799 WDR62O43379 1518 aa13.98□□□□□ -0.17
CCDC40-212ENST00000574799 RANGAP1P46060 587 aaPredicted RBP13.98□□□□□ -0.17
CCDC40-212ENST00000574799 THOC2Q8NI27 1593 aaKnown RBP13.97□□□□□ -0.17
CCDC40-212ENST00000574799 TIAM1Q13009 1591 aa13.97□□□□□ -0.17
CCDC40-212ENST00000574799 HNRNPUL2Q1KMD3 747 aaKnown RBP13.97□□□□□ -0.17
CCDC40-212ENST00000574799 BCANQ96GW7 911 aa13.96□□□□□ -0.17
CCDC40-212ENST00000574799 GAPVD1Q14C86 1478 aa13.95□□□□□ -0.18
CCDC40-212ENST00000574799 TDRD9Q8NDG6 1382 aaKnown RBP13.95□□□□□ -0.18
CCDC40-212ENST00000574799 MAP3K1Q13233 1512 aa13.94□□□□□ -0.18
CCDC40-212ENST00000574799 MRC2Q9UBG0 1479 aa13.93□□□□□ -0.18
CCDC40-212ENST00000574799 ADAMTS12P58397 1594 aa13.93□□□□□ -0.18
CCDC40-212ENST00000574799 ERICH6Q7L0X2 663 aa13.92□□□□□ -0.18
CCDC40-212ENST00000574799 SNAPC4Q5SXM2 1469 aa13.91□□□□□ -0.18
CCDC40-212ENST00000574799 RRBP1Q9P2E9 1410 aaKnown RBP13.91□□□□□ -0.18
CCDC40-212ENST00000574799 ZNF608Q9ULD9 1512 aaPredicted RBP13.9□□□□□ -0.18
CCDC40-212ENST00000574799 EFCAB5A4FU69 1503 aa13.9□□□□□ -0.18
CCDC40-212ENST00000574799 SUPT16HQ9Y5B9 1047 aaKnown RBP13.89□□□□□ -0.19
CCDC40-212ENST00000574799 AQRO60306 1485 aaKnown RBP eCLIP13.87□□□□□ -0.19
CCDC40-212ENST00000574799 FHOD3Q2V2M9 1422 aa13.87□□□□□ -0.19
CCDC40-212ENST00000574799 EIF4G3O43432 1585 aaKnown RBP13.86□□□□□ -0.19
CCDC40-212ENST00000574799 LRRC9Q6ZRR7 1453 aa13.85□□□□□ -0.19
CCDC40-212ENST00000574799 TSHZ2Q9NRE2 1034 aa13.84□□□□□ -0.19
CCDC40-212ENST00000574799 NEFLP07196 543 aa13.83□□□□□ -0.19
CCDC40-212ENST00000574799 CLSPNQ9HAW4 1339 aa13.83□□□□□ -0.2
CCDC40-212ENST00000574799 FYCO1Q9BQS8 1478 aa13.82□□□□□ -0.2
CCDC40-212ENST00000574799 APLP2Q06481 763 aa13.82□□□□□ -0.2
CCDC40-212ENST00000574799 GRIN2BQ13224 1484 aa13.8□□□□□ -0.2
CCDC40-212ENST00000574799 CASKIN1Q8WXD9 1431 aa13.8□□□□□ -0.2
CCDC40-212ENST00000574799 MAGI3Q5TCQ9 1506 aa13.8□□□□□ -0.2
CCDC40-212ENST00000574799 PHLDB1Q86UU1 1377 aa13.79□□□□□ -0.2
CCDC40-212ENST00000574799 IFT140Q96RY7 1462 aa13.78□□□□□ -0.2
CCDC40-212ENST00000574799 FHAD1B1AJZ9 1412 aa13.77□□□□□ -0.21
CCDC40-212ENST00000574799 IQGAP2Q13576 1575 aa13.76□□□□□ -0.21
CCDC40-212ENST00000574799 P3H3Q8IVL6 736 aa13.74□□□□□ -0.21
CCDC40-212ENST00000574799 ARHGEF11O15085 1522 aa13.74□□□□□ -0.21
CCDC40-212ENST00000574799 CEP170Q5SW79 1584 aa13.73□□□□□ -0.21
CCDC40-212ENST00000574799 FKBP8Q14318 412 aa13.73□□□□□ -0.21
CCDC40-212ENST00000574799 UGGT2Q9NYU1 1516 aa13.72□□□□□ -0.21
CCDC40-212ENST00000574799 DISP1Q96F81 1524 aa13.72□□□□□ -0.21
CCDC40-212ENST00000574799 CCNB3Q8WWL7 1395 aa13.71□□□□□ -0.21
CCDC40-212ENST00000574799 DHX57Q6P158 1386 aaKnown RBP13.7□□□□□ -0.22
CCDC40-212ENST00000574799 KIAA0556O60303 1618 aa13.69□□□□□ -0.22
CCDC40-212ENST00000574799 MAPKBP1O60336 1514 aa13.68□□□□□ -0.22
CCDC40-212ENST00000574799 GRIN2AQ12879 1464 aa13.68□□□□□ -0.22
CCDC40-212ENST00000574799 FMN1Q68DA7 1419 aa13.67□□□□□ -0.22
CCDC40-212ENST00000574799 ITGAEP38570 1179 aa13.63□□□□□ -0.23
CCDC40-212ENST00000574799 PTPRKQ15262 1439 aa13.63□□□□□ -0.23
CCDC40-212ENST00000574799 ERCC6Q03468 1493 aa13.63□□□□□ -0.23
CCDC40-212ENST00000574799 SUPT6HQ7KZ85 1726 aaKnown RBP13.62□□□□□ -0.23
CCDC40-212ENST00000574799 MAGI1Q96QZ7 1491 aaPredicted RBP13.62□□□□□ -0.23
CCDC40-212ENST00000574799 HECW1Q76N89 1606 aa13.62□□□□□ -0.23
CCDC40-212ENST00000574799 CDK13Q14004 1512 aaKnown RBP13.61□□□□□ -0.23
CCDC40-212ENST00000574799 KIAA0586Q9BVV6 1533 aa13.61□□□□□ -0.23
CCDC40-212ENST00000574799 RBM19Q9Y4C8 960 aaKnown RBP13.6□□□□□ -0.23
CCDC40-212ENST00000574799 EPRSP07814 1512 aaKnown RBP13.6□□□□□ -0.23
CCDC40-212ENST00000574799 EHBP1L1Q8N3D4 1523 aa13.59□□□□□ -0.23
CCDC40-212ENST00000574799 SYNJ2O15056 1496 aa13.59□□□□□ -0.23
CCDC40-212ENST00000574799 NCOA2Q15596 1464 aa13.59□□□□□ -0.23
CCDC40-212ENST00000574799 NUP160Q12769 1436 aa13.58□□□□□ -0.24
CCDC40-212ENST00000574799 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.58□□□□□ -0.24
CCDC40-212ENST00000574799 FGD6Q6ZV73 1430 aa13.58□□□□□ -0.24
CCDC40-212ENST00000574799 NUP153P49790 1475 aaKnown RBP13.57□□□□□ -0.24
CCDC40-212ENST00000574799 RAPGEF6Q8TEU7 1601 aa13.57□□□□□ -0.24
CCDC40-212ENST00000574799 RAB3GAP2Q9H2M9 1393 aa13.57□□□□□ -0.24
CCDC40-212ENST00000574799 PTPN23Q9H3S7 1636 aa13.56□□□□□ -0.24
CCDC40-212ENST00000574799 CHD1O14646 1710 aa13.55□□□□□ -0.24
CCDC40-212ENST00000574799 KDM6BO15054 1643 aa13.55□□□□□ -0.24
CCDC40-212ENST00000574799 PRKCSHP14314 528 aaPredicted RBP13.54□□□□□ -0.24
CCDC40-212ENST00000574799 CCDC18Q5T9S5 1454 aa13.54□□□□□ -0.24
CCDC40-212ENST00000574799 TCOF1Q13428 1488 aaKnown RBP13.53□□□□□ -0.24
CCDC40-212ENST00000574799 DENND4BO75064 1496 aaPredicted RBP13.52□□□□□ -0.25
CCDC40-212ENST00000574799 MYOM3Q5VTT5 1437 aa13.51□□□□□ -0.25
CCDC40-212ENST00000574799 GCC2Q8IWJ2 1684 aa13.51□□□□□ -0.25
CCDC40-212ENST00000574799 ADCY10Q96PN6 1610 aa13.5□□□□□ -0.25
CCDC40-212ENST00000574799 CDK11AQ9UQ88 783 aaPredicted RBP13.5□□□□□ -0.25
CCDC40-212ENST00000574799 SETD5Q9C0A6 1442 aa13.5□□□□□ -0.25
CCDC40-212ENST00000574799 SHROOM2Q13796 1616 aa13.49□□□□□ -0.25
CCDC40-212ENST00000574799 TRIM52Q96A61 297 aa13.49□□□□□ -0.25
CCDC40-212ENST00000574799 KIF14Q15058 1648 aa13.48□□□□□ -0.25
CCDC40-212ENST00000574799 ABCA8O94911 1581 aa13.48□□□□□ -0.25
CCDC40-212ENST00000574799 PLB1Q6P1J6 1458 aa13.47□□□□□ -0.25
CCDC40-212ENST00000574799 KCNH8Q96L42 1107 aa13.47□□□□□ -0.25
CCDC40-212ENST00000574799 KDM5BQ9UGL1 1544 aa13.45□□□□□ -0.26
CCDC40-212ENST00000574799 MTUS2Q5JR59 1369 aa13.45□□□□□ -0.26
CCDC40-212ENST00000574799 HFM1A2PYH4 1435 aa13.44□□□□□ -0.26
CCDC40-212ENST00000574799 NAIPQ13075 1403 aa13.44□□□□□ -0.26
CCDC40-212ENST00000574799 DDX10Q13206 875 aaKnown RBP13.44□□□□□ -0.26
CCDC40-212ENST00000574799 ATP1B4Q9UN42 357 aaPredicted RBP13.44□□□□□ -0.26
CCDC40-212ENST00000574799 CDC42BPAQ5VT25 1732 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms