RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 NISCHQ9Y2I1 1504 aa20.2■□□□□ 0.82
CCDC40-212ENST00000574799 CCDC180Q9P1Z9 1646 aa17.48■□□□□ 0.39
CCDC40-212ENST00000574799 ZCCHC6Q5VYS8 1495 aaKnown RBP17.08■□□□□ 0.33
CCDC40-212ENST00000574799 DCAF1Q9Y4B6 1507 aa16.67■□□□□ 0.26
CCDC40-212ENST00000574799 SHROOM4Q9ULL8 1493 aa16.64■□□□□ 0.25
CCDC40-212ENST00000574799 MYO15BQ96JP2 1530 aa16.32■□□□□ 0.2
CCDC40-212ENST00000574799 DCAF8L2P0C7V8 631 aa16.23■□□□□ 0.19
CCDC40-212ENST00000574799 ABCC9O60706 1549 aa16.15■□□□□ 0.18
CCDC40-212ENST00000574799 SCRIBQ14160 1630 aa16.15■□□□□ 0.18
CCDC40-212ENST00000574799 NACADO15069 1562 aa16.08■□□□□ 0.17
CCDC40-212ENST00000574799 SUPT5HO00267 1087 aaKnown RBP16.03■□□□□ 0.16
CCDC40-212ENST00000574799 UNC13AQ9UPW8 1703 aa15.98■□□□□ 0.15
CCDC40-212ENST00000574799 HRCP23327 699 aa15.88■□□□□ 0.13
CCDC40-212ENST00000574799 RB1CC1Q8TDY2 1594 aa15.85■□□□□ 0.13
CCDC40-212ENST00000574799 RSF1Q96T23 1441 aaPredicted RBP15.8■□□□□ 0.12
CCDC40-212ENST00000574799 PCGF6Q9BYE7 350 aa15.77■□□□□ 0.11
CCDC40-212ENST00000574799 CECR2Q9BXF3 1484 aa15.77■□□□□ 0.11
CCDC40-212ENST00000574799 PELP1Q8IZL8 1130 aaKnown RBP15.72■□□□□ 0.11
CCDC40-212ENST00000574799 MROH2BQ7Z745 1585 aa15.71■□□□□ 0.11
CCDC40-212ENST00000574799 PPARGC1BQ86YN6 1023 aaKnown RBP15.68■□□□□ 0.1
CCDC40-212ENST00000574799 BICRAQ9NZM4 1560 aa15.67■□□□□ 0.1
CCDC40-212ENST00000574799 WIZO95785 1651 aa15.65■□□□□ 0.1
CCDC40-212ENST00000574799 CHIC1Q5VXU3 224 aa15.64■□□□□ 0.09
CCDC40-212ENST00000574799 BAZ1AQ9NRL2 1556 aaPredicted RBP15.52■□□□□ 0.08
CCDC40-212ENST00000574799 EIF4G1Q04637 1599 aaKnown RBP15.51■□□□□ 0.07
CCDC40-212ENST00000574799 SMARCA4P51532 1647 aa15.51■□□□□ 0.07
CCDC40-212ENST00000574799 TOP2AP11388 1531 aaKnown RBP15.34■□□□□ 0.05
CCDC40-212ENST00000574799 PEG3Q9GZU2 1588 aa15.33■□□□□ 0.05
CCDC40-212ENST00000574799 SMARCA2P51531 1590 aa15.31■□□□□ 0.04
CCDC40-212ENST00000574799 PABPN1Q86U42 306 aaKnown RBP eCLIP15.26■□□□□ 0.03
CCDC40-212ENST00000574799 CCDC88BA6NC98 1476 aa15.23■□□□□ 0.03
CCDC40-212ENST00000574799 MYT1Q01538 1121 aa15.19■□□□□ 0.02
CCDC40-212ENST00000574799 LOC105371045A0A1W2PR82 267 aa15.11■□□□□ 0.01
CCDC40-212ENST00000574799 ABCC8Q09428 1581 aa15.1■□□□□ 0.01
CCDC40-212ENST00000574799 ATAD2BQ9ULI0 1458 aa15.1■□□□□ 0.01
CCDC40-212ENST00000574799 SCAF1Q9H7N4 1312 aaKnown RBP15.09■□□□□ 0.01
CCDC40-212ENST00000574799 ZEB1P37275 1124 aaPredicted RBP15.04■□□□□ -0
CCDC40-212ENST00000574799 TRIM26Q12899 539 aaPredicted RBP15.04■□□□□ -0
CCDC40-212ENST00000574799 TRIM41Q8WV44 630 aa14.96□□□□□ -0.01
CCDC40-212ENST00000574799 BAZ1BQ9UIG0 1483 aaKnown RBP14.93□□□□□ -0.02
CCDC40-212ENST00000574799 HMGXB3Q12766 1538 aa14.91□□□□□ -0.02
CCDC40-212ENST00000574799 SYNJ1O43426 1573 aa14.91□□□□□ -0.02
CCDC40-212ENST00000574799 NCAPD3P42695 1498 aa14.87□□□□□ -0.03
CCDC40-212ENST00000574799 CENPBP07199 599 aaPredicted RBP14.85□□□□□ -0.03
CCDC40-212ENST00000574799 RUSC2Q8N2Y8 1516 aa14.84□□□□□ -0.03
CCDC40-212ENST00000574799 EHMT2Q96KQ7 1210 aa14.82□□□□□ -0.04
CCDC40-212ENST00000574799 SOGA1O94964 1423 aa14.82□□□□□ -0.04
CCDC40-212ENST00000574799 GTF3C3Q9Y5Q9 886 aa14.79□□□□□ -0.04
CCDC40-212ENST00000574799 PRDM2Q13029 1718 aa14.78□□□□□ -0.04
CCDC40-212ENST00000574799 ACIN1Q9UKV3 1341 aaKnown RBP14.77□□□□□ -0.04
CCDC40-212ENST00000574799 FAM9AQ8IZU1 332 aaPredicted RBP14.77□□□□□ -0.04
CCDC40-212ENST00000574799 BIVM-ERCC5R4GMW8 1640 aa14.77□□□□□ -0.05
CCDC40-212ENST00000574799 TOP2BQ02880 1626 aa14.73□□□□□ -0.05
CCDC40-212ENST00000574799 CC2D2AQ9P2K1 1620 aa14.73□□□□□ -0.05
CCDC40-212ENST00000574799 WRNQ14191 1432 aaPredicted RBP eCLIP14.73□□□□□ -0.05
CCDC40-212ENST00000574799 NEUROD1Q13562 356 aa14.72□□□□□ -0.05
CCDC40-212ENST00000574799 CFTRP13569 1480 aa14.67□□□□□ -0.06
CCDC40-212ENST00000574799 CCER1Q8TC90 406 aaPredicted RBP14.65□□□□□ -0.06
CCDC40-212ENST00000574799 CUX1P39880 1505 aa14.65□□□□□ -0.06
CCDC40-212ENST00000574799 YTHDC1Q96MU7 727 aaKnown RBP14.63□□□□□ -0.07
CCDC40-212ENST00000574799 KIF21BO75037 1637 aa14.61□□□□□ -0.07
CCDC40-212ENST00000574799 DIEXFQ68CQ4 756 aaKnown RBP14.57□□□□□ -0.08
CCDC40-212ENST00000574799 EEA1Q15075 1411 aa14.56□□□□□ -0.08
CCDC40-212ENST00000574799 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.54□□□□□ -0.08
CCDC40-212ENST00000574799 CEP162Q5TB80 1403 aa14.51□□□□□ -0.09
CCDC40-212ENST00000574799 TNIKQ9UKE5 1360 aa14.5□□□□□ -0.09
CCDC40-212ENST00000574799 CSRNP3Q8WYN3 585 aa14.48□□□□□ -0.09
CCDC40-212ENST00000574799 RAPGEF2Q9Y4G8 1499 aa14.48□□□□□ -0.09
CCDC40-212ENST00000574799 TTBK1Q5TCY1 1321 aaPredicted RBP14.47□□□□□ -0.09
CCDC40-212ENST00000574799 GOLGA3Q08378 1498 aa14.47□□□□□ -0.09
CCDC40-212ENST00000574799 CADPSQ9ULU8 1353 aa14.44□□□□□ -0.1
CCDC40-212ENST00000574799 PRXQ9BXM0 1461 aa14.43□□□□□ -0.1
CCDC40-212ENST00000574799 CEP164Q9UPV0 1460 aa14.43□□□□□ -0.1
CCDC40-212ENST00000574799 DNAJC5BQ9UF47 199 aa14.43□□□□□ -0.1
CCDC40-212ENST00000574799 NESP48681 1621 aa14.42□□□□□ -0.1
CCDC40-212ENST00000574799 ERICH3Q5RHP9 1530 aa14.39□□□□□ -0.11
CCDC40-212ENST00000574799 WDR97A6NE52 1622 aa14.37□□□□□ -0.11
CCDC40-212ENST00000574799 FGD5Q6ZNL6 1462 aa14.33□□□□□ -0.11
CCDC40-212ENST00000574799 FANCD2Q9BXW9 1451 aa14.33□□□□□ -0.11
CCDC40-212ENST00000574799 KIF21AQ7Z4S6 1674 aa14.33□□□□□ -0.12
CCDC40-212ENST00000574799 DNMBPQ6XZF7 1577 aa14.31□□□□□ -0.12
CCDC40-212ENST00000574799 LAMC3Q9Y6N6 1575 aa14.31□□□□□ -0.12
CCDC40-212ENST00000574799 ARAP1Q96P48 1450 aa14.28□□□□□ -0.12
CCDC40-212ENST00000574799 URB2Q14146 1524 aaKnown RBP14.27□□□□□ -0.12
CCDC40-212ENST00000574799 TOPBP1Q92547 1522 aa14.27□□□□□ -0.12
CCDC40-212ENST00000574799 POLA1P09884 1462 aaPredicted RBP14.25□□□□□ -0.13
CCDC40-212ENST00000574799 CLIP1P30622 1438 aa14.24□□□□□ -0.13
CCDC40-212ENST00000574799 KIF27Q86VH2 1401 aa14.24□□□□□ -0.13
CCDC40-212ENST00000574799 IGF1RP08069 1367 aa14.24□□□□□ -0.13
CCDC40-212ENST00000574799 RAD54L2Q9Y4B4 1467 aa14.22□□□□□ -0.13
CCDC40-212ENST00000574799 CUX2O14529 1486 aa14.22□□□□□ -0.13
CCDC40-212ENST00000574799 ABCA10Q8WWZ4 1543 aa14.21□□□□□ -0.13
CCDC40-212ENST00000574799 VPS8Q8N3P4 1428 aa14.21□□□□□ -0.13
CCDC40-212ENST00000574799 UBTFP17480 764 aaKnown RBP14.21□□□□□ -0.13
CCDC40-212ENST00000574799 ABCA5Q8WWZ7 1642 aa14.2□□□□□ -0.14
CCDC40-212ENST00000574799 TARBP1Q13395 1621 aaKnown RBP14.18□□□□□ -0.14
CCDC40-212ENST00000574799 ZNF316A6NFI3 1004 aaPredicted RBP14.18□□□□□ -0.14
CCDC40-212ENST00000574799 ARHGAP35Q9NRY4 1499 aa14.17□□□□□ -0.14
CCDC40-212ENST00000574799 BCL11AQ9H165 835 aa14.13□□□□□ -0.15
CCDC40-212ENST00000574799 CTTNBP2Q8WZ74 1663 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms