RNA–Protein interactions for RNA: ENST00000571351.1

TNFRSF12A-203, Transcript of TNF receptor superfamily member 12A, human

TSL 2

Gene TNFRSF12A, Length 1,678 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TNFRSF12A-203	ENST00000571351	NUP160	Q12769	1436 aa		33.15	■■■□□ 2.9
TNFRSF12A-203	ENST00000571351	CTTNBP2	Q8WZ74	1663 aa		33.14	■■■□□ 2.9
TNFRSF12A-203	ENST00000571351	KIAA0586	Q9BVV6	1533 aa		33.02	■■■□□ 2.88
TNFRSF12A-203	ENST00000571351	IQGAP2	Q13576	1575 aa		32.99	■■■□□ 2.87
TNFRSF12A-203	ENST00000571351	CLASP1	Q7Z460	1538 aa		32.94	■■■□□ 2.86
TNFRSF12A-203	ENST00000571351	CEP162	Q5TB80	1403 aa		32.92	■■■□□ 2.86
TNFRSF12A-203	ENST00000571351	RANGAP1	P46060	587 aa	Predicted RBP	32.88	■■■□□ 2.85
TNFRSF12A-203	ENST00000571351	OSCAR	Q8IYS5	282 aa		32.88	■■■□□ 2.85
TNFRSF12A-203	ENST00000571351	UGGT2	Q9NYU1	1516 aa		32.84	■■■□□ 2.85
TNFRSF12A-203	ENST00000571351	CLIP1	P30622	1438 aa		32.83	■■■□□ 2.85
TNFRSF12A-203	ENST00000571351	SHROOM2	Q13796	1616 aa		32.81	■■■□□ 2.84
TNFRSF12A-203	ENST00000571351	JPH4	Q96JJ6	628 aa		32.8	■■■□□ 2.84
TNFRSF12A-203	ENST00000571351	ARHGAP35	Q9NRY4	1499 aa		32.79	■■■□□ 2.84
TNFRSF12A-203	ENST00000571351	SAMD9	Q5K651	1589 aa		32.78	■■■□□ 2.84
TNFRSF12A-203	ENST00000571351	DISP1	Q96F81	1524 aa		32.74	■■■□□ 2.83
TNFRSF12A-203	ENST00000571351	EFCAB5	A4FU69	1503 aa		32.73	■■■□□ 2.83
TNFRSF12A-203	ENST00000571351	KIAA0556	O60303	1618 aa		32.68	■■■□□ 2.82
TNFRSF12A-203	ENST00000571351	ARAP1	Q96P48	1450 aa		32.68	■■■□□ 2.82
TNFRSF12A-203	ENST00000571351	PRG4	Q92954	1404 aa	Predicted RBP	32.66	■■■□□ 2.82
TNFRSF12A-203	ENST00000571351	P3H3	Q8IVL6	736 aa		32.66	■■■□□ 2.82
TNFRSF12A-203	ENST00000571351	ERCC6L2	Q5T890	1561 aa		32.64	■■■□□ 2.82
TNFRSF12A-203	ENST00000571351	FHOD3	Q2V2M9	1422 aa		32.62	■■■□□ 2.81
TNFRSF12A-203	ENST00000571351	CARMIL2	Q6F5E8	1435 aa		32.58	■■■□□ 2.81
TNFRSF12A-203	ENST00000571351	VPS8	Q8N3P4	1428 aa		32.45	■■■□□ 2.79
TNFRSF12A-203	ENST00000571351	FMN1	Q68DA7	1419 aa		32.41	■■■□□ 2.78
TNFRSF12A-203	ENST00000571351	ARHGEF11	O15085	1522 aa		32.4	■■■□□ 2.78
TNFRSF12A-203	ENST00000571351	TTBK1	Q5TCY1	1321 aa	Predicted RBP	32.38	■■■□□ 2.77
TNFRSF12A-203	ENST00000571351	PTPRG	P23470	1445 aa		32.36	■■■□□ 2.77
TNFRSF12A-203	ENST00000571351	PCF11	O94913	1555 aa	Known RBP	32.34	■■■□□ 2.77
TNFRSF12A-203	ENST00000571351	RIMBP3C	A6NJZ7	1639 aa		32.32	■■■□□ 2.76
TNFRSF12A-203	ENST00000571351	RIMBP3B	A6NNM3	1639 aa		32.32	■■■□□ 2.76
TNFRSF12A-203	ENST00000571351	RIMBP3	Q9UFD9	1639 aa		32.32	■■■□□ 2.76
TNFRSF12A-203	ENST00000571351	PLB1	Q6P1J6	1458 aa		32.3	■■■□□ 2.76
TNFRSF12A-203	ENST00000571351	CASKIN1	Q8WXD9	1431 aa		32.29	■■■□□ 2.76
TNFRSF12A-203	ENST00000571351	ABCA8	O94911	1581 aa		32.27	■■■□□ 2.76
TNFRSF12A-203	ENST00000571351	RAPGEF6	Q8TEU7	1601 aa		32.26	■■■□□ 2.75
TNFRSF12A-203	ENST00000571351	FYCO1	Q9BQS8	1478 aa		32.25	■■■□□ 2.75
TNFRSF12A-203	ENST00000571351	LRRIQ1	Q96JM4	1722 aa		32.21	■■■□□ 2.75
TNFRSF12A-203	ENST00000571351	UACA	Q9BZF9	1416 aa		32.19	■■■□□ 2.74
TNFRSF12A-203	ENST00000571351	NUP153	P49790	1475 aa	Known RBP	32.18	■■■□□ 2.74
TNFRSF12A-203	ENST00000571351	HECW1	Q76N89	1606 aa		32.17	■■■□□ 2.74
TNFRSF12A-203	ENST00000571351	ATP1B4	Q9UN42	357 aa	Predicted RBP	32.14	■■■□□ 2.74
TNFRSF12A-203	ENST00000571351	ABCC2	Q92887	1545 aa		32.13	■■■□□ 2.73
TNFRSF12A-203	ENST00000571351	UHRF1BP1L	A0JNW5	1464 aa		32.11	■■■□□ 2.73
TNFRSF12A-203	ENST00000571351	ADCY10	Q96PN6	1610 aa		32.1	■■■□□ 2.73
TNFRSF12A-203	ENST00000571351	EPRS	P07814	1512 aa	Known RBP	32.09	■■■□□ 2.73
TNFRSF12A-203	ENST00000571351	ARID3C	A6NKF2	412 aa		32.05	■■■□□ 2.72
TNFRSF12A-203	ENST00000571351	DNAJC5	Q9H3Z4	198 aa		32.05	■■■□□ 2.72
TNFRSF12A-203	ENST00000571351	CDK13	Q14004	1512 aa	Known RBP	32.05	■■■□□ 2.72
TNFRSF12A-203	ENST00000571351	TIAM1	Q13009	1591 aa		32.04	■■■□□ 2.72
TNFRSF12A-203	ENST00000571351	CFAP43	Q8NDM7	1665 aa		32.04	■■■□□ 2.72
TNFRSF12A-203	ENST00000571351	CYB5RL	Q6IPT4	315 aa		32.04	■■■□□ 2.72
TNFRSF12A-203	ENST00000571351	MAP3K1	Q13233	1512 aa		32.03	■■■□□ 2.72
TNFRSF12A-203	ENST00000571351	ATP10B	O94823	1461 aa		32.02	■■■□□ 2.72
TNFRSF12A-203	ENST00000571351	CCDC18	Q5T9S5	1454 aa		32.02	■■■□□ 2.72
TNFRSF12A-203	ENST00000571351	KDM5B	Q9UGL1	1544 aa		31.98	■■■□□ 2.71
TNFRSF12A-203	ENST00000571351	APLP2	Q06481	763 aa		31.95	■■■□□ 2.71
TNFRSF12A-203	ENST00000571351	KANK4	Q5T7N3	995 aa	Predicted RBP	31.95	■■■□□ 2.7
TNFRSF12A-203	ENST00000571351	ZCCHC11	Q5TAX3	1644 aa	Known RBP	31.93	■■■□□ 2.7
TNFRSF12A-203	ENST00000571351	MAGI3	Q5TCQ9	1506 aa		31.92	■■■□□ 2.7
TNFRSF12A-203	ENST00000571351	PPARGC1B	Q86YN6	1023 aa	Known RBP	31.91	■■■□□ 2.7
TNFRSF12A-203	ENST00000571351	LRRC9	Q6ZRR7	1453 aa		31.89	■■■□□ 2.7
TNFRSF12A-203	ENST00000571351	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	31.86	■■■□□ 2.69
TNFRSF12A-203	ENST00000571351	HNRNPUL2	Q1KMD3	747 aa	Known RBP	31.86	■■■□□ 2.69
TNFRSF12A-203	ENST00000571351	MTUS2	Q5JR59	1369 aa		31.78	■■■□□ 2.68
TNFRSF12A-203	ENST00000571351	EHBP1L1	Q8N3D4	1523 aa		31.78	■■■□□ 2.68
TNFRSF12A-203	ENST00000571351	TRO	Q12816	1431 aa	Predicted RBP	31.76	■■■□□ 2.67
TNFRSF12A-203	ENST00000571351	CDK11A	Q9UQ88	783 aa	Predicted RBP	31.76	■■■□□ 2.67
TNFRSF12A-203	ENST00000571351	PLEKHD1	A6NEE1	506 aa		31.73	■■■□□ 2.67
TNFRSF12A-203	ENST00000571351	NPM1	P06748	294 aa	Known RBP eCLIP	31.73	■■■□□ 2.67
TNFRSF12A-203	ENST00000571351	ASXL2	Q76L83	1435 aa		31.7	■■■□□ 2.66
TNFRSF12A-203	ENST00000571351	KIF14	Q15058	1648 aa		31.68	■■■□□ 2.66
TNFRSF12A-203	ENST00000571351	SUPT6H	Q7KZ85	1726 aa	Known RBP	31.67	■■■□□ 2.66
TNFRSF12A-203	ENST00000571351	WDR7	Q9Y4E6	1490 aa		31.67	■■■□□ 2.66
TNFRSF12A-203	ENST00000571351	MAPKBP1	O60336	1514 aa		31.67	■■■□□ 2.66
TNFRSF12A-203	ENST00000571351	NCOA2	Q15596	1464 aa		31.64	■■■□□ 2.65
TNFRSF12A-203	ENST00000571351	TRIM26	Q12899	539 aa	Predicted RBP	31.6	■■■□□ 2.65
TNFRSF12A-203	ENST00000571351	PHLDB1	Q86UU1	1377 aa		31.57	■■■□□ 2.64
TNFRSF12A-203	ENST00000571351	ABCC10	Q5T3U5	1492 aa		31.57	■■■□□ 2.64
TNFRSF12A-203	ENST00000571351	KCNH8	Q96L42	1107 aa		31.57	■■■□□ 2.64
TNFRSF12A-203	ENST00000571351	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	31.54	■■■□□ 2.64
TNFRSF12A-203	ENST00000571351	TTC37	Q6PGP7	1564 aa		31.52	■■■□□ 2.64
TNFRSF12A-203	ENST00000571351	CDC42BPA	Q5VT25	1732 aa		31.46	■■■□□ 2.63
TNFRSF12A-203	ENST00000571351	ABCA9	Q8IUA7	1624 aa		31.46	■■■□□ 2.63
TNFRSF12A-203	ENST00000571351	GPATCH8	Q9UKJ3	1502 aa	Known RBP	31.45	■■■□□ 2.63
TNFRSF12A-203	ENST00000571351	MYOM3	Q5VTT5	1437 aa		31.44	■■■□□ 2.62
TNFRSF12A-203	ENST00000571351	CCNB3	Q8WWL7	1395 aa		31.43	■■■□□ 2.62
TNFRSF12A-203	ENST00000571351	DIP2B	Q9P265	1576 aa		31.41	■■■□□ 2.62
TNFRSF12A-203	ENST00000571351	PCGF6	Q9BYE7	350 aa		31.39	■■■□□ 2.62
TNFRSF12A-203	ENST00000571351	MYO5C	Q9NQX4	1742 aa		31.38	■■■□□ 2.61
TNFRSF12A-203	ENST00000571351	CDC42BPB	Q9Y5S2	1711 aa		31.38	■■■□□ 2.61
TNFRSF12A-203	ENST00000571351	ITSN2	Q9NZM3	1697 aa		31.38	■■■□□ 2.61
TNFRSF12A-203	ENST00000571351	GLI2	P10070	1586 aa		31.38	■■■□□ 2.61
TNFRSF12A-203	ENST00000571351	FGD6	Q6ZV73	1430 aa		31.38	■■■□□ 2.61
TNFRSF12A-203	ENST00000571351	RRBP1	Q9P2E9	1410 aa	Known RBP	31.38	■■■□□ 2.61
TNFRSF12A-203	ENST00000571351	PREX2	Q70Z35	1606 aa		31.37	■■■□□ 2.61
TNFRSF12A-203	ENST00000571351	KIF13A	Q9H1H9	1805 aa		31.34	■■■□□ 2.61
TNFRSF12A-203	ENST00000571351	PLCH2	O75038	1416 aa		31.32	■■■□□ 2.6
TNFRSF12A-203	ENST00000571351	MIA2	Q96PC5	1412 aa		31.32	■■■□□ 2.6
TNFRSF12A-203	ENST00000571351	MAP3K4	Q9Y6R4	1608 aa		31.31	■■■□□ 2.6

Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms