RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 KIAA0586Q9BVV6 1533 aa22.24■■□□□ 1.15
CNOT1-220ENST00000569916 PRG4Q92954 1404 aaPredicted RBP22.22■■□□□ 1.15
CNOT1-220ENST00000569916 JPH4Q96JJ6 628 aa22.19■■□□□ 1.14
CNOT1-220ENST00000569916 RAPGEF2Q9Y4G8 1499 aa22.17■■□□□ 1.14
CNOT1-220ENST00000569916 IQGAP2Q13576 1575 aa22.14■■□□□ 1.13
CNOT1-220ENST00000569916 CTTNBP2Q8WZ74 1663 aa22.09■■□□□ 1.13
CNOT1-220ENST00000569916 PRXQ9BXM0 1461 aa22.07■■□□□ 1.12
CNOT1-220ENST00000569916 UGGT2Q9NYU1 1516 aa22■■□□□ 1.11
CNOT1-220ENST00000569916 ADCY10Q96PN6 1610 aa21.98■■□□□ 1.11
CNOT1-220ENST00000569916 EEA1Q15075 1411 aa21.98■■□□□ 1.11
CNOT1-220ENST00000569916 DISP1Q96F81 1524 aa21.98■■□□□ 1.11
CNOT1-220ENST00000569916 CARMIL2Q6F5E8 1435 aa21.97■■□□□ 1.11
CNOT1-220ENST00000569916 TRHP20396 242 aaPredicted RBP21.96■■□□□ 1.11
CNOT1-220ENST00000569916 KIAA0556O60303 1618 aa21.95■■□□□ 1.1
CNOT1-220ENST00000569916 TNIKQ9UKE5 1360 aa21.92■■□□□ 1.1
CNOT1-220ENST00000569916 CHIC1Q5VXU3 224 aa21.92■■□□□ 1.1
CNOT1-220ENST00000569916 CSRNP3Q8WYN3 585 aa21.92■■□□□ 1.1
CNOT1-220ENST00000569916 PTPRGP23470 1445 aa21.9■■□□□ 1.1
CNOT1-220ENST00000569916 KIF13AQ9H1H9 1805 aa21.87■■□□□ 1.09
CNOT1-220ENST00000569916 MAPKBP1O60336 1514 aa21.85■■□□□ 1.09
CNOT1-220ENST00000569916 KIF21BO75037 1637 aa21.84■■□□□ 1.09
CNOT1-220ENST00000569916 GOLGA3Q08378 1498 aa21.82■■□□□ 1.08
CNOT1-220ENST00000569916 TTBK1Q5TCY1 1321 aaPredicted RBP21.81■■□□□ 1.08
CNOT1-220ENST00000569916 FAM9AQ8IZU1 332 aaPredicted RBP21.81■■□□□ 1.08
CNOT1-220ENST00000569916 UHRF1BP1LA0JNW5 1464 aa21.81■■□□□ 1.08
CNOT1-220ENST00000569916 ABCC2Q92887 1545 aa21.8■■□□□ 1.08
CNOT1-220ENST00000569916 UACAQ9BZF9 1416 aa21.79■■□□□ 1.08
CNOT1-220ENST00000569916 NPM1P06748 294 aaKnown RBP eCLIP21.77■■□□□ 1.08
CNOT1-220ENST00000569916 DIP2BQ9P265 1576 aa21.77■■□□□ 1.08
CNOT1-220ENST00000569916 SAMD9Q5K651 1589 aa21.76■■□□□ 1.07
CNOT1-220ENST00000569916 ABCC10Q5T3U5 1492 aa21.74■■□□□ 1.07
CNOT1-220ENST00000569916 ABCA8O94911 1581 aa21.71■■□□□ 1.07
CNOT1-220ENST00000569916 ZCCHC11Q5TAX3 1644 aaKnown RBP21.71■■□□□ 1.07
CNOT1-220ENST00000569916 KDM5BQ9UGL1 1544 aa21.7■■□□□ 1.07
CNOT1-220ENST00000569916 PLB1Q6P1J6 1458 aa21.7■■□□□ 1.06
CNOT1-220ENST00000569916 ASXL2Q76L83 1435 aa21.65■■□□□ 1.06
CNOT1-220ENST00000569916 FAM69CQ0P6D2 419 aa21.62■■□□□ 1.05
CNOT1-220ENST00000569916 P3H3Q8IVL6 736 aa21.6■■□□□ 1.05
CNOT1-220ENST00000569916 EFCAB5A4FU69 1503 aa21.6■■□□□ 1.05
CNOT1-220ENST00000569916 GLI2P10070 1586 aa21.59■■□□□ 1.05
CNOT1-220ENST00000569916 TSPOAP1O95153 1857 aa21.58■■□□□ 1.05
CNOT1-220ENST00000569916 RAPGEF6Q8TEU7 1601 aa21.57■■□□□ 1.04
CNOT1-220ENST00000569916 FHOD3Q2V2M9 1422 aa21.55■■□□□ 1.04
CNOT1-220ENST00000569916 EPRSP07814 1512 aaKnown RBP21.54■■□□□ 1.04
CNOT1-220ENST00000569916 PPRC1Q5VV67 1664 aaKnown RBP21.53■■□□□ 1.04
CNOT1-220ENST00000569916 RANGAP1P46060 587 aaPredicted RBP21.53■■□□□ 1.04
CNOT1-220ENST00000569916 EHMT2Q96KQ7 1210 aa21.53■■□□□ 1.04
CNOT1-220ENST00000569916 WDR7Q9Y4E6 1490 aa21.52■■□□□ 1.04
CNOT1-220ENST00000569916 MAP3K4Q9Y6R4 1608 aa21.52■■□□□ 1.04
CNOT1-220ENST00000569916 UBTFP17480 764 aaKnown RBP21.5■■□□□ 1.03
CNOT1-220ENST00000569916 ATP10BO94823 1461 aa21.47■■□□□ 1.03
CNOT1-220ENST00000569916 NUP153P49790 1475 aaKnown RBP21.45■■□□□ 1.03
CNOT1-220ENST00000569916 ARHGAP35Q9NRY4 1499 aa21.45■■□□□ 1.02
CNOT1-220ENST00000569916 KDM6BO15054 1643 aa21.44■■□□□ 1.02
CNOT1-220ENST00000569916 CFAP43Q8NDM7 1665 aa21.44■■□□□ 1.02
CNOT1-220ENST00000569916 ARID3CA6NKF2 412 aa21.41■■□□□ 1.02
CNOT1-220ENST00000569916 AEBP2Q6ZN18 517 aaPredicted RBP21.36■■□□□ 1.01
CNOT1-220ENST00000569916 TEX14Q8IWB6 1497 aa21.35■■□□□ 1.01
CNOT1-220ENST00000569916 FMN1Q68DA7 1419 aa21.35■■□□□ 1.01
CNOT1-220ENST00000569916 ABCA9Q8IUA7 1624 aa21.34■■□□□ 1.01
CNOT1-220ENST00000569916 HECW1Q76N89 1606 aa21.33■■□□□ 1.01
CNOT1-220ENST00000569916 KCNH8Q96L42 1107 aa21.32■■□□□ 1
CNOT1-220ENST00000569916 MAGI3Q5TCQ9 1506 aa21.32■■□□□ 1
CNOT1-220ENST00000569916 CD109Q6YHK3 1445 aa21.3■■□□□ 1
CNOT1-220ENST00000569916 CDK13Q14004 1512 aaKnown RBP21.3■■□□□ 1
CNOT1-220ENST00000569916 LRRIQ1Q96JM4 1722 aa21.29■■□□□ 1
CNOT1-220ENST00000569916 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.27■■□□□ 1
CNOT1-220ENST00000569916 HNRNPUL2Q1KMD3 747 aaKnown RBP21.27■■□□□ 1
CNOT1-220ENST00000569916 COL17A1Q9UMD9 1497 aaPredicted RBP21.26■□□□□ 0.99
CNOT1-220ENST00000569916 PCF11O94913 1555 aaKnown RBP21.25■□□□□ 0.99
CNOT1-220ENST00000569916 CLIP1P30622 1438 aa21.22■□□□□ 0.99
CNOT1-220ENST00000569916 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.19■□□□□ 0.98
CNOT1-220ENST00000569916 TTC37Q6PGP7 1564 aa21.19■□□□□ 0.98
CNOT1-220ENST00000569916 PLEKHD1A6NEE1 506 aa21.19■□□□□ 0.98
CNOT1-220ENST00000569916 CASKIN1Q8WXD9 1431 aa21.18■□□□□ 0.98
CNOT1-220ENST00000569916 ATP1B4Q9UN42 357 aaPredicted RBP21.16■□□□□ 0.98
CNOT1-220ENST00000569916 ARAP3Q8WWN8 1544 aa21.14■□□□□ 0.98
CNOT1-220ENST00000569916 FYCO1Q9BQS8 1478 aa21.14■□□□□ 0.98
CNOT1-220ENST00000569916 CCDC18Q5T9S5 1454 aa21.13■□□□□ 0.97
CNOT1-220ENST00000569916 NEO1Q92859 1461 aa21.13■□□□□ 0.97
CNOT1-220ENST00000569916 KIF14Q15058 1648 aa21.12■□□□□ 0.97
CNOT1-220ENST00000569916 CEP162Q5TB80 1403 aa21.11■□□□□ 0.97
CNOT1-220ENST00000569916 CFAP74Q9C0B2 1584 aa21.1■□□□□ 0.97
CNOT1-220ENST00000569916 TROQ12816 1431 aaPredicted RBP21.09■□□□□ 0.97
CNOT1-220ENST00000569916 MYO5CQ9NQX4 1742 aa21.09■□□□□ 0.97
CNOT1-220ENST00000569916 PHLDB1Q86UU1 1377 aa21.09■□□□□ 0.97
CNOT1-220ENST00000569916 FRMPD1Q5SYB0 1578 aa21.06■□□□□ 0.96
CNOT1-220ENST00000569916 CDK11AQ9UQ88 783 aaPredicted RBP21.06■□□□□ 0.96
CNOT1-220ENST00000569916 FANCAO15360 1455 aa21.05■□□□□ 0.96
CNOT1-220ENST00000569916 RICTORQ6R327 1708 aa21.03■□□□□ 0.96
CNOT1-220ENST00000569916 LOC105371045A0A1W2PR82 267 aa21.01■□□□□ 0.95
CNOT1-220ENST00000569916 PLCH2O75038 1416 aa21.01■□□□□ 0.95
CNOT1-220ENST00000569916 AKNAQ7Z591 1439 aa21■□□□□ 0.95
CNOT1-220ENST00000569916 CDC42BPBQ9Y5S2 1711 aa20.98■□□□□ 0.95
CNOT1-220ENST00000569916 PREX2Q70Z35 1606 aa20.97■□□□□ 0.95
CNOT1-220ENST00000569916 DENND4BO75064 1496 aaPredicted RBP20.96■□□□□ 0.95
CNOT1-220ENST00000569916 CDC42BPAQ5VT25 1732 aa20.95■□□□□ 0.94
CNOT1-220ENST00000569916 RAPGEF3O95398 923 aa20.95■□□□□ 0.94
CNOT1-220ENST00000569916 ADGRL1O94910 1474 aa20.94■□□□□ 0.94
CNOT1-220ENST00000569916 KDM4FA0A1W2PPD8 638 aa20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 1106.8 ms