RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 NISCHQ9Y2I1 1504 aa32.13■■■□□ 2.73
CNOT1-220ENST00000569916 CCDC180Q9P1Z9 1646 aa28.72■■■□□ 2.19
CNOT1-220ENST00000569916 ABCC9O60706 1549 aa28.14■■■□□ 2.1
CNOT1-220ENST00000569916 RB1CC1Q8TDY2 1594 aa27.04■■□□□ 1.92
CNOT1-220ENST00000569916 NACADO15069 1562 aa26.97■■□□□ 1.91
CNOT1-220ENST00000569916 MYO15BQ96JP2 1530 aa26.76■■□□□ 1.87
CNOT1-220ENST00000569916 ZCCHC6Q5VYS8 1495 aaKnown RBP26.76■■□□□ 1.87
CNOT1-220ENST00000569916 DCAF8L2P0C7V8 631 aa26.75■■□□□ 1.87
CNOT1-220ENST00000569916 DCAF1Q9Y4B6 1507 aa26.6■■□□□ 1.85
CNOT1-220ENST00000569916 UNC13AQ9UPW8 1703 aa26.53■■□□□ 1.84
CNOT1-220ENST00000569916 BICRAQ9NZM4 1560 aa26.27■■□□□ 1.8
CNOT1-220ENST00000569916 PABPN1Q86U42 306 aaKnown RBP eCLIP26.2■■□□□ 1.78
CNOT1-220ENST00000569916 SCRIBQ14160 1630 aa26.15■■□□□ 1.78
CNOT1-220ENST00000569916 SHROOM4Q9ULL8 1493 aa25.95■■□□□ 1.74
CNOT1-220ENST00000569916 DNAJC5BQ9UF47 199 aa25.92■■□□□ 1.74
CNOT1-220ENST00000569916 EIF4G1Q04637 1599 aaKnown RBP25.56■■□□□ 1.68
CNOT1-220ENST00000569916 CC2D2AQ9P2K1 1620 aa25.5■■□□□ 1.67
CNOT1-220ENST00000569916 CECR2Q9BXF3 1484 aa25.29■■□□□ 1.64
CNOT1-220ENST00000569916 SMARCA4P51532 1647 aa25.01■■□□□ 1.59
CNOT1-220ENST00000569916 BAZ1AQ9NRL2 1556 aaPredicted RBP24.92■■□□□ 1.58
CNOT1-220ENST00000569916 NCAPD3P42695 1498 aa24.85■■□□□ 1.57
CNOT1-220ENST00000569916 ATAD2BQ9ULI0 1458 aa24.85■■□□□ 1.57
CNOT1-220ENST00000569916 SMARCA2P51531 1590 aa24.84■■□□□ 1.57
CNOT1-220ENST00000569916 HMGXB3Q12766 1538 aa24.77■■□□□ 1.56
CNOT1-220ENST00000569916 MROH2BQ7Z745 1585 aa24.77■■□□□ 1.56
CNOT1-220ENST00000569916 PEG3Q9GZU2 1588 aa24.76■■□□□ 1.55
CNOT1-220ENST00000569916 BAZ1BQ9UIG0 1483 aaKnown RBP24.64■■□□□ 1.54
CNOT1-220ENST00000569916 WIZO95785 1651 aa24.53■■□□□ 1.52
CNOT1-220ENST00000569916 RSF1Q96T23 1441 aaPredicted RBP24.39■■□□□ 1.5
CNOT1-220ENST00000569916 NESP48681 1621 aa24.33■■□□□ 1.49
CNOT1-220ENST00000569916 LAMC3Q9Y6N6 1575 aa24.27■■□□□ 1.48
CNOT1-220ENST00000569916 ERCC6Q03468 1493 aa24.25■■□□□ 1.47
CNOT1-220ENST00000569916 TOP2AP11388 1531 aaKnown RBP24.24■■□□□ 1.47
CNOT1-220ENST00000569916 KIF21AQ7Z4S6 1674 aa24.11■■□□□ 1.45
CNOT1-220ENST00000569916 CADPSQ9ULU8 1353 aa24.09■■□□□ 1.45
CNOT1-220ENST00000569916 CUX2O14529 1486 aa24.08■■□□□ 1.45
CNOT1-220ENST00000569916 THOC2Q8NI27 1593 aaKnown RBP24.07■■□□□ 1.44
CNOT1-220ENST00000569916 PDS5BQ9NTI5 1447 aa24.03■■□□□ 1.44
CNOT1-220ENST00000569916 CFTRP13569 1480 aa23.95■■□□□ 1.42
CNOT1-220ENST00000569916 CCDC88BA6NC98 1476 aa23.91■■□□□ 1.42
CNOT1-220ENST00000569916 PRDM2Q13029 1718 aa23.9■■□□□ 1.42
CNOT1-220ENST00000569916 FANCD2Q9BXW9 1451 aa23.85■■□□□ 1.41
CNOT1-220ENST00000569916 MRC2Q9UBG0 1479 aa23.84■■□□□ 1.41
CNOT1-220ENST00000569916 CEP164Q9UPV0 1460 aa23.84■■□□□ 1.41
CNOT1-220ENST00000569916 WDR62O43379 1518 aa23.8■■□□□ 1.4
CNOT1-220ENST00000569916 URB2Q14146 1524 aaKnown RBP23.64■■□□□ 1.38
CNOT1-220ENST00000569916 SUPT5HO00267 1087 aaKnown RBP23.57■■□□□ 1.36
CNOT1-220ENST00000569916 TOPBP1Q92547 1522 aa23.47■■□□□ 1.35
CNOT1-220ENST00000569916 DNMBPQ6XZF7 1577 aa23.45■■□□□ 1.34
CNOT1-220ENST00000569916 DNAJC5Q9H3Z4 198 aa23.43■■□□□ 1.34
CNOT1-220ENST00000569916 ABCC8Q09428 1581 aa23.43■■□□□ 1.34
CNOT1-220ENST00000569916 IFT140Q96RY7 1462 aa23.34■■□□□ 1.33
CNOT1-220ENST00000569916 TARBP1Q13395 1621 aaKnown RBP23.27■■□□□ 1.32
CNOT1-220ENST00000569916 ZNF608Q9ULD9 1512 aaPredicted RBP23.27■■□□□ 1.32
CNOT1-220ENST00000569916 POLA1P09884 1462 aaPredicted RBP23.26■■□□□ 1.31
CNOT1-220ENST00000569916 CUX1P39880 1505 aa23.25■■□□□ 1.31
CNOT1-220ENST00000569916 EIF4G3O43432 1585 aaKnown RBP23.23■■□□□ 1.31
CNOT1-220ENST00000569916 FGD5Q6ZNL6 1462 aa23.18■■□□□ 1.3
CNOT1-220ENST00000569916 RAD54L2Q9Y4B4 1467 aa23.14■■□□□ 1.29
CNOT1-220ENST00000569916 WDR97A6NE52 1622 aa23.11■■□□□ 1.29
CNOT1-220ENST00000569916 SOGA1O94964 1423 aa23.1■■□□□ 1.29
CNOT1-220ENST00000569916 AQRO60306 1485 aaKnown RBP eCLIP23.07■■□□□ 1.288e-7■■■■■ 28.7
CNOT1-220ENST00000569916 BIVM-ERCC5R4GMW8 1640 aa23.06■■□□□ 1.28
CNOT1-220ENST00000569916 TOP2BQ02880 1626 aa23.03■■□□□ 1.28
CNOT1-220ENST00000569916 SYNJ1O43426 1573 aa23.02■■□□□ 1.28
CNOT1-220ENST00000569916 WRNQ14191 1432 aaPredicted RBP eCLIP23■■□□□ 1.27
CNOT1-220ENST00000569916 TDRD9Q8NDG6 1382 aaKnown RBP22.99■■□□□ 1.27
CNOT1-220ENST00000569916 CHD1O14646 1710 aa22.99■■□□□ 1.27
CNOT1-220ENST00000569916 OSCARQ8IYS5 282 aa22.95■■□□□ 1.26
CNOT1-220ENST00000569916 ABCA10Q8WWZ4 1543 aa22.95■■□□□ 1.26
CNOT1-220ENST00000569916 PBRM1Q86U86 1689 aa22.94■■□□□ 1.26
CNOT1-220ENST00000569916 ABCA5Q8WWZ7 1642 aa22.93■■□□□ 1.26
CNOT1-220ENST00000569916 SNAPC4Q5SXM2 1469 aa22.9■■□□□ 1.26
CNOT1-220ENST00000569916 GRIN2BQ13224 1484 aa22.88■■□□□ 1.25
CNOT1-220ENST00000569916 GAPVD1Q14C86 1478 aa22.86■■□□□ 1.25
CNOT1-220ENST00000569916 MAGI1Q96QZ7 1491 aaPredicted RBP22.86■■□□□ 1.25
CNOT1-220ENST00000569916 SYNJ2O15056 1496 aa22.77■■□□□ 1.24
CNOT1-220ENST00000569916 FBLN2P98095 1184 aa22.75■■□□□ 1.23
CNOT1-220ENST00000569916 RIMBP3CA6NJZ7 1639 aa22.75■■□□□ 1.23
CNOT1-220ENST00000569916 RIMBP3BA6NNM3 1639 aa22.75■■□□□ 1.23
CNOT1-220ENST00000569916 RIMBP3Q9UFD9 1639 aa22.75■■□□□ 1.23
CNOT1-220ENST00000569916 ADAMTS12P58397 1594 aa22.72■■□□□ 1.23
CNOT1-220ENST00000569916 CLASP1Q7Z460 1538 aa22.7■■□□□ 1.22
CNOT1-220ENST00000569916 ARHGEF11O15085 1522 aa22.69■■□□□ 1.22
CNOT1-220ENST00000569916 CHMP7Q8WUX9 453 aaPredicted RBP22.68■■□□□ 1.22
CNOT1-220ENST00000569916 ERICH3Q5RHP9 1530 aa22.67■■□□□ 1.22
CNOT1-220ENST00000569916 GRIN2AQ12879 1464 aa22.61■■□□□ 1.21
CNOT1-220ENST00000569916 FHAD1B1AJZ9 1412 aa22.59■■□□□ 1.21
CNOT1-220ENST00000569916 TRIM41Q8WV44 630 aa22.58■■□□□ 1.21
CNOT1-220ENST00000569916 CEP170Q5SW79 1584 aa22.55■■□□□ 1.2
CNOT1-220ENST00000569916 NUP160Q12769 1436 aa22.51■■□□□ 1.19
CNOT1-220ENST00000569916 KIF27Q86VH2 1401 aa22.51■■□□□ 1.19
CNOT1-220ENST00000569916 ARAP1Q96P48 1450 aa22.5■■□□□ 1.19
CNOT1-220ENST00000569916 CUL7Q14999 1698 aa22.49■■□□□ 1.19
CNOT1-220ENST00000569916 SHROOM2Q13796 1616 aa22.42■■□□□ 1.18
CNOT1-220ENST00000569916 IGF1RP08069 1367 aa22.42■■□□□ 1.18
CNOT1-220ENST00000569916 RUSC2Q8N2Y8 1516 aa22.4■■□□□ 1.18
CNOT1-220ENST00000569916 CYB5RLQ6IPT4 315 aa22.38■■□□□ 1.17
CNOT1-220ENST00000569916 ERCC6L2Q5T890 1561 aa22.37■■□□□ 1.17
CNOT1-220ENST00000569916 CARMIL1Q5VZK9 1371 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms